Cucsa.102930.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.102930.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Late embryogenesis abundant protein, group 6
Location	scaffold00927 : 1848458 .. 1848933 (-)
Sequence length	476

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGCGGGAGGCCGATCAGTCGCAGGGACAAAACAAGGAGATCAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAGGAAATTCCGTTGGAGAGCAGTCCGTACGTGAATTATGAAGACTTGGAAGATTACAAAAATCAAGCCTACGGAACACAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGAGGCGGTGGCCCAACCGACGCCCCCACTCTCTCCGGCGACGCCGCCGCGACACGTCGGTGATTAACCGCCAAGGAGTACCCTGAGAAGACATTCGCTGGCGCTTTCTTTGGCCGTTCTGTTTTATTAAGGAATATTTGTTTTGCTGTAGGCTGAGTCTTGTTAATGTGTAACCTTACAATGGGTAAGGTAATGAATGAAAACAGTTGGAATAATCGGAATGGTATTATTAAAAAATTGATGACACTTACTAAATAATGAAGAGCAATATGTCGGTGTGCATTATA

mRNA sequence

ATGGAGAAGCGGGAGGCCGATCAGTCGCAGGGACAAAACAAGGAGATCAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAGGAAATTCCGTTGGAGAGCAGTCCGTACGTGAATTATGAAGACTTGGAAGATTACAAAAATCAAGCCTACGGAACACAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGAGGCGGTGGCCCAACCGACGCCCCCACTCTCTCCGGCGACGCCGCCGCGACACGTCGGTGATTAACCGCCAAGGAGTACCCTGAGAAGACATTCGCTGGCGCTTTCTTTGGCCGTTCTGTTTTATTAAGGAATATTTGTTTTGCTGTAGGCTGAGTCTTGTTAATGTGTAACCTTACAATGGGTAAGGTAATGAATGAAAACAGTTGGAATAATCGGAATGGTATTATTAAAAAATTGATGACACTTACTAAATAATGAAGAGCAATATGTCGGTGTGCATTATA

Coding sequence (CDS)

ATGGAGAAGCGGGAGGCCGATCAGTCGCAGGGACAAAACAAGGAGATCAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAGGAAATTCCGTTGGAGAGCAGTCCGTACGTGAATTATGAAGACTTGGAAGATTACAAAAATCAAGCCTACGGAACACAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGAGGCGGTGGCCCAACCGACGCCCCCACTCTCTCCGGCGACGCCGCCGCGACACGTCGGTGA

Protein sequence

MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAAATRR*

Homology

[Close]

BLAST of Cucsa.102930.1 vs. TrEMBL
Match: A0A0A0KGG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G493910 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.6e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60
          MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP
Sbjct: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60

Query: 61 GRGGGGGPTDAPTLSGDAAATRR 84
          GRGGGGGPTDAPTLSGDAAATRR
Sbjct: 61 GRGGGGGPTDAPTLSGDAAATRR 83

[Close]

BLAST of Cucsa.102930.1 vs. TrEMBL
Match: V4SFD8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026786mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-17
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 1   MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60
           MEK++  +++ +  E  +S  EK+  E +P++ SPYV Y+DLEDYK Q YGT+GHL+P+ 
Sbjct: 23  MEKKQEQETERKKSETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHLKPQT 82

Query: 61  GRGGGGGPTDAPTLSGDAAAT 82
           GRGGG   TDAPTLSGDA A+
Sbjct: 83  GRGGGA--TDAPTLSGDAVAS 101

[Close]

BLAST of Cucsa.102930.1 vs. TrEMBL
Match: A0A0J8CCV2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127730 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-15
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1


Query: 12 QNKEIRKSEREKERSEE------IPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGG 71
          +N   ++SE EK++SEE      +P+E+SPYV Y+DLEDYK Q YGTQGH++PKPGRG G
Sbjct: 3  KNSNNQQSENEKKQSEEAKKLEGLPIETSPYVQYKDLEDYKQQGYGTQGHMEPKPGRGAG 62

Query: 72 GGPTDAPTLSG---DAAAT 82
          G  TDAPT SG   D +AT
Sbjct: 63 G--TDAPTPSGGVSDGSAT 79

[Close]

BLAST of Cucsa.102930.1 vs. TrEMBL
Match: A0A067K721_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12502 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.8e-15
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 1


Query: 12 QNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDA 71
          Q  E R+ + +KE+ E +P+E SPY+ Y+DLEDYK + YGTQGHLQPKPGRG G   TDA
Sbjct: 4  QATESREEQEKKEKLEGLPVEDSPYLQYKDLEDYKLKGYGTQGHLQPKPGRGAGA--TDA 63

Query: 72 PTLSG 77
          PTLSG
Sbjct: 64 PTLSG 66

[Close]

BLAST of Cucsa.102930.1 vs. TrEMBL
Match: F6I6V2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00820 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.9e-15
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1


Query: 14 KEIRKSEREKERSEE-------IPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGGG 73
          +++RK   E+ER+EE       +P+ESSPY+ Y DLEDYK Q YGT+GHL+PKP +GGGG
Sbjct: 6  EQLRKKTEEEERAEEKASKLRGLPMESSPYLKYTDLEDYKRQGYGTEGHLEPKPNQGGGG 65

Query: 74 GPTDAPTLSG 77
            TDAPTL+G
Sbjct: 66 --TDAPTLAG 73

[Close]

BLAST of Cucsa.102930.1 vs. TAIR10
Match: AT2G33690.1 (AT2G33690.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 79.7 bits (195), Expect = 9.4e-16
Identity = 37/58 (63.79%), Postives = 42/58 (72.41%), Query Frame = 1


Query: 22 EKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAA 80
          + E  +E+PLE+SPY  YED+EDYK  AYGT GH   KPG   GGG TDAPT SGDAA
Sbjct: 3  KSEEKQELPLETSPYTKYEDIEDYKKNAYGTSGHQDVKPGH--GGGTTDAPTPSGDAA 58

[Close]

BLAST of Cucsa.102930.1 vs. TAIR10
Match: AT2G23120.1 (AT2G23120.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 61.6 bits (148), Expect = 2.6e-10
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 1


Query: 5  EADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGG 64
          EA ++        + + E+ +  ++P +S PY+    LEDYK +AYG +GH +P PG GG
Sbjct: 2  EAGKTPPTTTTTTEKKTEQVKDNDLPTDS-PYMATGTLEDYKLKAYGAEGHQEPTPGLGG 61

Query: 65 GGGPTDAPTLSGDAAA 81
          G   TDAPT SGDA A
Sbjct: 62 GS--TDAPTPSGDAPA 74

[Close]

BLAST of Cucsa.102930.1 vs. TAIR10
Match: AT2G23110.1 (AT2G23110.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 60.1 bits (144), Expect = 7.7e-10
Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 1


Query: 18 KSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSG 77
          + E ++ +++++    +PY++Y++LEDYK + YG QGH +PK G GGG   TDAPT SG
Sbjct: 11 EQEVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGA--TDAPTPSG 67

[Close]

BLAST of Cucsa.102930.1 vs. NCBI nr
Match: gi|778718556|ref|XP_011657884.1| (PREDICTED: uncharacterized protein LOC105435909 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 2.3e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60
          MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP
Sbjct: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60

Query: 61 GRGGGGGPTDAPTLSGDAAATRR 84
          GRGGGGGPTDAPTLSGDAAATRR
Sbjct: 61 GRGGGGGPTDAPTLSGDAAATRR 83

[Close]

BLAST of Cucsa.102930.1 vs. NCBI nr
Match: gi|567866839|ref|XP_006426042.1| (hypothetical protein CICLE_v10026786mg [Citrus clementina])

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-17
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 1   MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60
           MEK++  +++ +  E  +S  EK+  E +P++ SPYV Y+DLEDYK Q YGT+GHL+P+ 
Sbjct: 23  MEKKQEQETERKKSETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHLKPQT 82

Query: 61  GRGGGGGPTDAPTLSGDAAAT 82
           GRGGG   TDAPTLSGDA A+
Sbjct: 83  GRGGGA--TDAPTLSGDAVAS 101

[Close]

BLAST of Cucsa.102930.1 vs. NCBI nr
Match: gi|568824226|ref|XP_006466503.1| (PREDICTED: uncharacterized protein LOC102616141 [Citrus sinensis])

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-17
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60
          MEK++  +++ +  E  +S  EK+  E +P++ SPYV Y+DLEDYK Q YGT+GHL+P+ 
Sbjct: 1  MEKKQEQETERKASETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHLKPQT 60

Query: 61 GRGGGGGPTDAPTLSGDAAAT 82
          GRGGG   TDAPTLSGDA A+
Sbjct: 61 GRGGGA--TDAPTLSGDAVAS 79

[Close]

BLAST of Cucsa.102930.1 vs. NCBI nr
Match: gi|720068635|ref|XP_010277173.1| (PREDICTED: uncharacterized protein LOC104611696 [Nelumbo nucifera])

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 45/81 (55.56%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 9  SQGQNKEIRKSE---REKERS---EEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGR 68
          S+ + + +RK+E    EK++S   EE+P+ESSPYVNY DLEDYK + YGT+GH +PKPGR
Sbjct: 2  SRSEEQTVRKTESAEEEKDKSPGGEELPVESSPYVNYSDLEDYKRRGYGTEGHQEPKPGR 61

Query: 69 GGGGGPTDAPTLSGDAAATRR 84
          G G   TDAPTLSG   + R+
Sbjct: 62 GAGA--TDAPTLSGSGLSERK 80

[Close]

BLAST of Cucsa.102930.1 vs. NCBI nr
Match: gi|731337043|ref|XP_010679579.1| (PREDICTED: uncharacterized protein LOC104894915 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-15
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1


Query: 12 QNKEIRKSEREKERSEE------IPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGG 71
          +N   ++SE EK++SEE      +P+E+SPYV Y+DLEDYK Q YGTQGH++PKPGRG G
Sbjct: 3  KNSNNQQSENEKKQSEEAKKLEGLPIETSPYVQYKDLEDYKQQGYGTQGHMEPKPGRGAG 62

Query: 72 GGPTDAPTLSG---DAAAT 82
          G  TDAPT SG   D +AT
Sbjct: 63 G--TDAPTPSGGVSDGSAT 79

The following BLAST results are available for this feature:

BLAST of Cucsa.102930.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGG1_CUCSA	1.6e-40	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G493910 PE=4 SV=1	[more]
V4SFD8_9ROSI	1.1e-17	54.32	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026786mg PE=4 SV=1	[more]
A0A0J8CCV2_BETVU	1.8e-15	58.23	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127730 PE=4 S...	[more]
A0A067K721_JATCU	6.8e-15	63.08	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12502 PE=4 SV=1	[more]
F6I6V2_VITVI	8.9e-15	58.57	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00820 PE=4 SV=...	[more]

BLAST of Cucsa.102930.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G33690.1	9.4e-16	63.79	Late embryogenesis abundant protein, group 6	[more]
AT2G23120.1	2.6e-10	43.42	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.1	7.7e-10	45.76	Late embryogenesis abundant protein, group 6	[more]

BLAST of Cucsa.102930.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778718556\|ref\|XP_011657884.1\|	2.3e-40	100.00	PREDICTED: uncharacterized protein LOC105435909 [Cucumis sativus]	[more]
gi\|567866839\|ref\|XP_006426042.1\|	1.6e-17	54.32	hypothetical protein CICLE_v10026786mg [Citrus clementina]	[more]
gi\|568824226\|ref\|XP_006466503.1\|	2.7e-17	54.32	PREDICTED: uncharacterized protein LOC102616141 [Citrus sinensis]	[more]
gi\|720068635\|ref\|XP_010277173.1\|	1.2e-15	55.56	PREDICTED: uncharacterized protein LOC104611696 [Nelumbo nucifera]	[more]
gi\|731337043\|ref\|XP_010679579.1\|	2.6e-15	58.23	PREDICTED: uncharacterized protein LOC104894915 [Beta vulgaris subsp. vulgaris]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR018930	LEA-18

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.102930	Cucsa.102930	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.102930.1	Cucsa.102930.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.102930.1.CDS.1	Cucsa.102930.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.102930.1.three_prime_UTR.1	Cucsa.102930.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018930	Late embryogenesis abundant protein, LEA-18	PFAM	PF10714	LEA_6	coord: 23..81 score: 2.6
None	No IPR available	unknown	Coil	Coil	coord: 9..29 scor
None	No IPR available	PANTHER	PTHR33922	FAMILY NOT NAMED	coord: 1..78 score: 5.7
None	No IPR available	PANTHER	PTHR33922:SF4	EXPRESSED PROTEIN	coord: 1..78 score: 5.7