Cucsa.065590 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.065590
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Heterogeneous nuclear ribonucleoprotein F
Location	scaffold00696 : 285100 .. 288556 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTAGGTATTTGTTGAGCTTCTTCCTCAAAATTCATGGGCCAGCCCGGAACGAAATCGGAAGGGTAGGGATCCATTGAGGCTTAACCGGAGGTCTCTTTCAGTTCCTTTCCTTCCTTCCTTCACCGTATTTGGATTTTGGAATTTCGATTCAGATTTCACAATCCAACTCAAGCTGCGACCCCTTCAACAACAATAACCAACTGGGTTATCCCCTATCAGCATGAACATGTTCTACCGAGGGTAACTTTCCCCGATCTCTATTCTCATCTTTTTCTTCTTGCTCTGTTTCGTTCCCTGTTAATTCTCACAATTTTACGTCGGTTTTGGGCTCTGGGTTCTCTTTTTTtGCTCTATATTTCATGTAATATATTGACTAATTGGGAATTCTTAGTTGTTATTATTTACTGATTATTATTGCGAACAATTATCGGTTTCCTCATCTTTCACTTCAAGAATTTTCTGCTTTCTTTTCTCGGATTGGGATTTTTTGTGGGTGTGATCGTGTGGGTGAATGTTGTTCTGGTGGAGTTTGTTTTTTTTTtGGGTTTTTATATCTTTCTGCAAGCTCTGTACAATAGGATGGGGAGAAACAATTTAAATATGGTGTATGATTCAACTAGGAAATTAGAATAAGACCGAGGTTTTAACTTGAAAATTTAGTGTTTTTtGTTTGTTTTTGTGAGTCCTGTAGGATGATTGGTGGGCATGTTTATATGATTTAGAAAATTGATTTATTGGATTGATTGTCATCAATTAACTACTGATGTTGGTAACTCTGGGGTTTTAATGTTGACTGTATTTATAGTGCACGATAATGTTTTAAATGGGAAGAAGACGCTTGATTCCCTTTGCGAGTCTGCGATAGATTGGAAAATATGGAACAGACAAGACGACCGAATTAGTTCAACCACCAAAGAAGCTTTAAATTGAAACTCTACTATATACTAGAAACAGAAATTATTTGGAGGAAAAAAGTCACCACTGAACGAAAAGTGTTAGGAACAGTGTATCAATTGTTTGCTAAGAATAAAACTTCAATTGGCTCTTTACAATGGAATTGGAGGAGGCCTTTGATATGGTTGATTGAAATTTATTGAATCAATATGCTATTGGAGAAAAAGGACTTTGGCCTGCAATTTTCTATTGTTTAACGCAAAGTCTTAGGGTAGAATTAAAGCTTCAAGGGGGCGAGACTCTCAGTTTACTGAAATTTTGTCCTATTCCCTACCCTGAGGAGGTCACTCAGGTGGACAATAGCAAGAGGACTAACAAACTCTCATAGGGACCCAAACTAACTCTTATTCAATATGTTTTACCTAGAATTTGAGGATACACCTCTCTTCGAAATTCCTATTTCTACTGCCATGACGATTCCATGTCAACAGGCTGCCACCTTGTGTCATGTAACATTCATGATCTTCCTCTAGGGGTTAGTATTGGCAATGTAATCAATCATAATCTGGATTCCGGCCCTCGTTTTTAAATGGTCGTAGAGATTCTCAAATGAACAAATTTGCTCTATCGCTAGGTCATTCATGAGACCTTTCTCACTGATTAATCTCATATGGCCATAACCCCTATACTATTTTACTATGAAAAACAAATGTAGTAAGAGAGCTGACTATCAGGATTGGAGAGTTAAACTTCTAATTTAATACTGAAGACATCTCAAGGATGAGGAACTCCCAAATATTCGAGAGCTCTTGCAGGAACTAGCTCATTTAGGACACTGACCAATCTGCTAGGAAGAAGAAATTTGGGGTCTGGACAAATATGTTCGCAAGATTGATACCTTTTAGGAGAGTTGTACTAAACACCTTTAAGGAGTTGCTCGCATGATTGCATCCCTCTTCTTTTAGTCTCCAATAATATGCAGAGTCATCTCTTCCTATGCTTCAATTATGTATCTAACCTCTGGAGAAACCCTCACTCTCTTGATTAGCCTCTACAAAAGAGGATGAAATAATCTGTGTCAGTTTATCTGCTCTTGTCTATAACCATGGTGAAGTTTAATGTAGTCCATTATCGGGGTTGGTGGTTGTGGAATACCTGAGGGTATTGGTATTTGGCAATGCATATTTGCAGTTGATTTAGAAGCGTCTGCCTTATATATATATAAATGTATGTATGTCTGTATGTATATTTATACACACATAGATATCTTCTGTGTTTTGGGAAACAGTGAAGTTTCCCACGTTCGTTTAATATGGGAAACTTGAAATTGCAGATTAATATTTTtGTGGCCAAGAAAACATTAGATGTGTATAGGAGCCATCTATTTGTTACTGGAGCAATTAATTTGAGAAATGCTTTTGTTTGAATTTCAAAATATATTATTATCTCCCAGGATGGGATATTGACAAGGTTCCTGTTTTTtGTGGATTTCTTGTTTCTGTTTGGACTAAAGTTCATACGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTCGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCGTATGCTTATGTTAATCAGCCTCCACCATTTCCTGTTGTCAGACTACGGGGTTTGCCTTTCGATTGCATGGAAACTGATGTCGTTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTCGTCCACAAGAACGGCAAATTCACAGGGGAAGGTTTTTGTGTCTTGGGTTATCCTCTCCAGGTTGATTTTGCCCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGTCAAGAATACTACAAGGCTGTAGCTAATGAAGTTTTTGATGCCCGGGGTGGGTCACCGAGAAGAAGTGCCCCAAGGTCCAAGTTAAACGATGAGGTGAAAGACTCTGCTGAGCACACCGGTGTATTACGCTTGAGAGGACTGCCATATTCTGCAGGCAAAGATGACATACTGGACTTCTTCAAAGGTTTCAACTTATCAGAAGACTCAATTCATTTGACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTTGAATTCTCAAACGAACAAGACTCAAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGCTACATTGAGTTGTTCCCATCATCACATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGACACCACCTATAATTCTATTCACTGTTCTTCTTCAACTACTATGTTGTTTTGCTTTTGGAGCCAATGAGATTTATGGAGTTAGAAGTGAATAGGAGAGCTAAGTTTGTTTTGTGTGCTTATGGTAACCATACATTCTCTGTACTTTCCAGGACCATTATTTGCCAGTCGAGCAGGTTGTTTCGCACTCGACTGCATGAATTTGTGAAAAGAATTTGGTTTAGTAGGCCTCTCTCTATATGATGTATTAACCGTTTCTCTGTGCTGATGCTTAAAATATCTCCACCC

mRNA sequence

TGTTAGGTATTTGTTGAGCTTCTTCCTCAAAATTCATGGGCCAGCCCGGAACGAAATCGGAAGGGTAGGGATCCATTGAGGCTTAACCGGAGGTCTCTTTCAGTTCCTTTCCTTCCTTCCTTCACCGTATTTGGATTTTGGAATTTCGATTCAGATTTCACAATCCAACTCAAGCTGCGACCCCTTCAACAACAATAACCAACTGGGTTATCCCCTATCAGCATGAACATGTTCTACCGAGGTTCATACGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTCGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCGTATGCTTATGTTAATCAGCCTCCACCATTTCCTGTTGTCAGACTACGGGGTTTGCCTTTCGATTGCATGGAAACTGATGTCGTTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTCGTCCACAAGAACGGCAAATTCACAGGGGAAGGTTTTTGTGTCTTGGGTTATCCTCTCCAGGTTGATTTTGCCCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGTCAAGAATACTACAAGGCTGTAGCTAATGAAGTTTTTGATGCCCGGGGTGGGTCACCGAGAAGAAGTGCCCCAAGGTCCAAGTTAAACGATGAGGTGAAAGACTCTGCTGAGCACACCGGTGTATTACGCTTGAGAGGACTGCCATATTCTGCAGGCAAAGATGACATACTGGACTTCTTCAAAGGTTTCAACTTATCAGAAGACTCAATTCATTTGACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTTGAATTCTCAAACGAACAAGACTCAAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGCTACATTGAGTTGTTCCCATCATCACATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGACACCACCTATAATTCTATTCACTGTTCTTCTTCAACTACTATGTTGTTTTGCTTTTGGAGCCAATGAGATTTATGGAGTTAGAAGTGAATAGGAGAGCTAAGTTTGTTTTGTGTGCTTATGGTAACCATACATTCTCTGTACTTTCCAGGACCATTATTTGCCAGTCGAGCAGGTTGTTTCGCACTCGACTGCATGAATTTGTGAAAAGAATTTGGTTTAGTAGGCCTCTCTCTATATGATGTATTAACCGTTTCTCTGTGCTGATGCTTAAAATATCTCCACCC

Coding sequence (CDS)

ATGAACATGTTCTACCGAGGTTCATACGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTCGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCGTATGCTTATGTTAATCAGCCTCCACCATTTCCTGTTGTCAGACTACGGGGTTTGCCTTTCGATTGCATGGAAACTGATGTCGTTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTCGTCCACAAGAACGGCAAATTCACAGGGGAAGGTTTTTGTGTCTTGGGTTATCCTCTCCAGGTTGATTTTGCCCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGTCAAGAATACTACAAGGCTGTAGCTAATGAAGTTTTTGATGCCCGGGGTGGGTCACCGAGAAGAAGTGCCCCAAGGTCCAAGTTAAACGATGAGGTGAAAGACTCTGCTGAGCACACCGGTGTATTACGCTTGAGAGGACTGCCATATTCTGCAGGCAAAGATGACATACTGGACTTCTTCAAAGGTTTCAACTTATCAGAAGACTCAATTCATTTGACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTTGAATTCTCAAACGAACAAGACTCAAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGCTACATTGAGTTGTTCCCATCATCACATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGA

Protein sequence

MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR*

Homology

[Close]

BLAST of Cucsa.065590 vs. Swiss-Prot
Match: HNRPF_HUMAN (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-26
Identity = 73/199 (36.68%), Postives = 116/199 (58.29%), Query Frame = 1


Query: 59  VVRLRGLPFDCMETDVVEFFHGLDIVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 118
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 119 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGV 178
           +++R++MG RY+E+F+S+R E    +            + S P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNSA------DSA-NDGF 131

Query: 179 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 238
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 239 RMTLGSRYIELFPSSHEEL 253
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

HSP 2 Score: 67.8 bits (164), Expect = 2.0e-10
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 1


Query: 174 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 233
           + +RGLPY A ++DI +FF   N     +H+ +  +GR +GEA VEF+  +++ AAMSKD
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 350

Query: 234 RMTLGSRYIELFPSS 249
           R  +  RYIELF +S
Sbjct: 351 RANMQHRYIELFLNS 363

[Close]

BLAST of Cucsa.065590 vs. Swiss-Prot
Match: HNRPF_MACFA (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-26
Identity = 73/199 (36.68%), Postives = 116/199 (58.29%), Query Frame = 1


Query: 59  VVRLRGLPFDCMETDVVEFFHGLDIVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 118
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 119 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGV 178
           +++R++MG RY+E+F+S+R E    +            + S P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNSA------DSA-NDGF 131

Query: 179 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 238
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 239 RMTLGSRYIELFPSSHEEL 253
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

HSP 2 Score: 67.8 bits (164), Expect = 2.0e-10
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 1


Query: 174 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 233
           + +RGLPY A ++DI +FF   N     +H+ +  +GR +GEA VEF+  +++ AAMSKD
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 350

Query: 234 RMTLGSRYIELFPSS 249
           R  +  RYIELF +S
Sbjct: 351 RANMQHRYIELFLNS 363

[Close]

BLAST of Cucsa.065590 vs. Swiss-Prot
Match: HNRPF_RAT (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-25
Identity = 73/199 (36.68%), Postives = 114/199 (57.29%), Query Frame = 1


Query: 59  VVRLRGLPFDCMETDVVEFFHGLDIVD-ILFVH----KNGKFTGEGFCVLGYPLQVDFAL 118
           VV+LRGLP+ C   DV  F     I D +  VH    + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 119 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGV 178
           +++R++MG RY+E+F+S+R E    +            + S P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNSA------DSA-NDGF 131

Query: 179 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 238
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 239 RMTLGSRYIELFPSSHEEL 253
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

HSP 2 Score: 67.8 bits (164), Expect = 2.0e-10
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 1


Query: 174 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 233
           + +RGLPY A ++DI +FF   N     +H+ +  +GR +GEA VEF+  +++ AAMSKD
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 350

Query: 234 RMTLGSRYIELFPSS 249
           R  +  RYIELF +S
Sbjct: 351 RANMQHRYIELFLNS 363

HSP 3 Score: 67.4 bits (163), Expect = 2.6e-10
Identity = 46/131 (35.11%), Postives = 68/131 (51.91%), Query Frame = 1


Query: 60  VRLRGLPFDCMETDVVEFFHGLDIVD---ILFVHKNGKFTGEGFCVLGYPLQVDFALQRN 119
           VRLRGLPF C + ++V+FF GL+IV     L V   GK TGE F         + AL ++
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172

Query: 120 RQNMGRRYVEIFRSNRQE---YYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGV 179
           ++ +G RY+E+F+S+++E   Y       +   R G   R     +    VK +    G+
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQA----GL 232

Query: 180 LRLRGLPYSAG 185
            R+R   YSAG
Sbjct: 233 DRMRSGAYSAG 239

[Close]

BLAST of Cucsa.065590 vs. Swiss-Prot
Match: HNRPF_MOUSE (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-25
Identity = 73/199 (36.68%), Postives = 114/199 (57.29%), Query Frame = 1


Query: 59  VVRLRGLPFDCMETDVVEFFHGLDIVD-ILFVH----KNGKFTGEGFCVLGYPLQVDFAL 118
           VV+LRGLP+ C   DV  F     I D +  VH    + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 119 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGV 178
           +++R++MG RY+E+F+S+R E    +            + S P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNSA------DSA-NDGF 131

Query: 179 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 238
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 239 RMTLGSRYIELFPSSHEEL 253
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

HSP 2 Score: 67.8 bits (164), Expect = 2.0e-10
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 1


Query: 174 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 233
           + +RGLPY A ++DI +FF   N     +H+ +  +GR +GEA VEF+  +++ AAMSKD
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 350

Query: 234 RMTLGSRYIELFPSS 249
           R  +  RYIELF +S
Sbjct: 351 RANMQHRYIELFLNS 363

HSP 3 Score: 67.4 bits (163), Expect = 2.6e-10
Identity = 46/131 (35.11%), Postives = 68/131 (51.91%), Query Frame = 1


Query: 60  VRLRGLPFDCMETDVVEFFHGLDIVD---ILFVHKNGKFTGEGFCVLGYPLQVDFALQRN 119
           VRLRGLPF C + ++V+FF GL+IV     L V   GK TGE F         + AL ++
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172

Query: 120 RQNMGRRYVEIFRSNRQE---YYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGV 179
           ++ +G RY+E+F+S+++E   Y       +   R G   R     +    VK +    G+
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQA----GL 232

Query: 180 LRLRGLPYSAG 185
            R+R   YSAG
Sbjct: 233 DRMRSGAYSAG 239

[Close]

BLAST of Cucsa.065590 vs. Swiss-Prot
Match: HNRPF_BOVIN (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-25
Identity = 72/199 (36.18%), Postives = 112/199 (56.28%), Query Frame = 1


Query: 59  VVRLRGLPFDCMETDVVEFFHGLDIVD-ILFVH----KNGKFTGEGFCVLGYPLQVDFAL 118
           VV+LRGLP+ C   DV  F     I D +  VH    + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 119 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGV 178
           +++R++MG RY+E+F+S+R E    +            + S P S   D   D     G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNSA--DTAND-----GF 131

Query: 179 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 238
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 239 RMTLGSRYIELFPSSHEEL 253
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

HSP 2 Score: 67.8 bits (164), Expect = 2.0e-10
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 1


Query: 174 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 233
           + +RGLPY A ++DI +FF   N     +H+ +  +GR +GEA VEF+  +++ AAMSKD
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 350

Query: 234 RMTLGSRYIELFPSS 249
           R  +  RYIELF +S
Sbjct: 351 RANMQHRYIELFLNS 363

HSP 3 Score: 67.4 bits (163), Expect = 2.6e-10
Identity = 45/131 (34.35%), Postives = 68/131 (51.91%), Query Frame = 1


Query: 60  VRLRGLPFDCMETDVVEFFHGLDIVD---ILFVHKNGKFTGEGFCVLGYPLQVDFALQRN 119
           VRLRGLPF C + ++++FF GL+IV     L V   GK TGE F         + AL ++
Sbjct: 113 VRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172

Query: 120 RQNMGRRYVEIFRSNRQE---YYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGV 179
           ++ +G RY+E+F+S+++E   Y       +   R G   R     +    VK +    G+
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQA----GL 232

Query: 180 LRLRGLPYSAG 185
            R+R   YSAG
Sbjct: 233 ERMRSGAYSAG 239

[Close]

BLAST of Cucsa.065590 vs. TrEMBL
Match: A0A0A0L205_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291930 PE=4 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 3.2e-148
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 1


Query: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60
           MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV
Sbjct: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60

Query: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120
           RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM
Sbjct: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120

Query: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180
           GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP
Sbjct: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180

Query: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240
           YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR
Sbjct: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240

Query: 241 YIELFPSSHEELDEAISRGR 261
           YIELFPSSHEELDEAISRGR
Sbjct: 241 YIELFPSSHEELDEAISRGR 260

[Close]

BLAST of Cucsa.065590 vs. TrEMBL
Match: V7BNU2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G062500g PE=4 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 8.0e-123
Identity = 216/261 (82.76%), Postives = 235/261 (90.04%), Query Frame = 1


Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQP---PPFPV 62
           MFYRG +ADGGDGREM AKRQR VD GSS+YGTS GS FMYN SPY YV+QP   PPFPV
Sbjct: 1   MFYRGKFADGGDGREMAAKRQRTVDPGSSFYGTSTGSNFMYNPSPYGYVSQPPPPPPFPV 60

Query: 63  VRLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQN 122
           VRLRGLPFDC ETDV EFFHGLDIVD+LFVHK GKFTGEGFCVLGYPLQVDFALQRNRQN
Sbjct: 61  VRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFTGEGFCVLGYPLQVDFALQRNRQN 120

Query: 123 MGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGL 182
           MGRRYVE+FRS RQEYYKA+ANEV DARGGSPRRSAPR+K  DE K+SAEHTGVLRLRGL
Sbjct: 121 MGRRYVEVFRSKRQEYYKAIANEVSDARGGSPRRSAPRAKSYDEGKESAEHTGVLRLRGL 180

Query: 183 PYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGS 242
           P+SA KDDI++FFK F LSEDSIH+ +NSEGRPSGEA+VEF++ +DSKAAM KDRMTLGS
Sbjct: 181 PFSASKDDIMEFFKDFGLSEDSIHIVMNSEGRPSGEAYVEFASAEDSKAAMVKDRMTLGS 240

Query: 243 RYIELFPSSHEELDEAISRGR 261
           RYIELFPSSH E++EAISRGR
Sbjct: 241 RYIELFPSSHSEMEEAISRGR 261

[Close]

BLAST of Cucsa.065590 vs. TrEMBL
Match: A0A061GSA0_THECC (RNA-binding family protein OS=Theobroma cacao GN=TCM_040707 PE=4 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 8.0e-123
Identity = 211/260 (81.15%), Postives = 235/260 (90.38%), Query Frame = 1


Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSP--YAYVNQPPPFPVV 62
           MFYRG Y DG DGREMGAKRQRI+DQG S+YGTSPGS FMYN  P  Y YV+QPPPFPVV
Sbjct: 1   MFYRGKYTDGADGREMGAKRQRIIDQGPSFYGTSPGSSFMYNAPPPPYTYVSQPPPFPVV 60

Query: 63  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 122
           RLRGLPFDC E DV EFFHGLDIVD+LFVHKN KFTGE FC+LGYPLQVDFALQ+NRQNM
Sbjct: 61  RLRGLPFDCTEADVAEFFHGLDIVDVLFVHKNSKFTGEAFCILGYPLQVDFALQKNRQNM 120

Query: 123 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 182
           GRRYVE+FRS RQEYYKA+ANEV DARGGSPRR+ PR+K +D+ KDSAEHTG+LRLRGLP
Sbjct: 121 GRRYVEVFRSKRQEYYKAIANEVADARGGSPRRNVPRAKSSDDAKDSAEHTGILRLRGLP 180

Query: 183 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 242
           +SAGKDDI++FFK F LSED+IH+ +NSEGRPSGEAFVEF+N +DSKAAM+KDRMTLGSR
Sbjct: 181 FSAGKDDIIEFFKDFVLSEDAIHIIMNSEGRPSGEAFVEFANAEDSKAAMAKDRMTLGSR 240

Query: 243 YIELFPSSHEELDEAISRGR 261
           YIELFPSS EE+D+AISRGR
Sbjct: 241 YIELFPSSPEEMDDAISRGR 260

[Close]

BLAST of Cucsa.065590 vs. TrEMBL
Match: A0A0S3S6G9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G190200 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 1.0e-122
Identity = 216/261 (82.76%), Postives = 234/261 (89.66%), Query Frame = 1


Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQP---PPFPV 62
           MFYRG +ADGGDGREM AKRQR VD GSS+YG S GS FMYN SPY YV+QP   PPFPV
Sbjct: 1   MFYRGKFADGGDGREMAAKRQRTVDPGSSFYGASTGSNFMYNPSPYGYVSQPPPPPPFPV 60

Query: 63  VRLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQN 122
           VRLRGLPFDC ETDV EFFHGLDIVD+LFVHK GKFTGEGFCVLGYPLQVDFALQRNRQN
Sbjct: 61  VRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFTGEGFCVLGYPLQVDFALQRNRQN 120

Query: 123 MGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGL 182
           MGRRYVE+FRS RQEYYKA+ANEV DARGGSPRRSAPR+K  DE KDSAEHTGVLRLRGL
Sbjct: 121 MGRRYVEVFRSKRQEYYKAIANEVSDARGGSPRRSAPRAKSYDEGKDSAEHTGVLRLRGL 180

Query: 183 PYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGS 242
           P+SA KDDI++FFK F LSEDSIH+ +NSEGRPSGEA+VEF++ +DSKAAM KDRMTLGS
Sbjct: 181 PFSASKDDIMEFFKDFGLSEDSIHIVMNSEGRPSGEAYVEFASAEDSKAAMVKDRMTLGS 240

Query: 243 RYIELFPSSHEELDEAISRGR 261
           RYIELFPSSH E++EAISRGR
Sbjct: 241 RYIELFPSSHSEMEEAISRGR 261

[Close]

BLAST of Cucsa.065590 vs. TrEMBL
Match: F6GU40_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02220 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 1.0e-122
Identity = 211/258 (81.78%), Postives = 235/258 (91.09%), Query Frame = 1


Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRL 62
           MFYRG YADG DGR+MG KRQRI DQGSS+YG SPGS FMYN SPY+Y+ QPPPFPVVRL
Sbjct: 1   MFYRGKYADGLDGRDMGPKRQRITDQGSSFYGGSPGSNFMYNASPYSYIGQPPPFPVVRL 60

Query: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122
           RGLPFDC E DV EFFH LDIVD+LFVHKNG+FTGE FCVLGYPLQV+FALQRNRQNMGR
Sbjct: 61  RGLPFDCSEADVAEFFHSLDIVDVLFVHKNGRFTGEAFCVLGYPLQVEFALQRNRQNMGR 120

Query: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYS 182
           RYVE+FRS RQEYYKA+ANEV D RGGSPRR+AP++K NDE K+SAEHTGVLRLRGLP+S
Sbjct: 121 RYVEVFRSKRQEYYKAIANEVSDTRGGSPRRTAPKAKSNDEGKESAEHTGVLRLRGLPFS 180

Query: 183 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 242
           A K+DI+DFFK F LSEDSIH+T+NSEGRP+GEAFVEF+N +DSKAAM+KDRMTLGSRYI
Sbjct: 181 ASKEDIMDFFKDFVLSEDSIHMTVNSEGRPTGEAFVEFTNAEDSKAAMAKDRMTLGSRYI 240

Query: 243 ELFPSSHEELDEAISRGR 261
           ELFPSS EELDEA++RGR
Sbjct: 241 ELFPSSLEELDEAVARGR 258

[Close]

BLAST of Cucsa.065590 vs. TAIR10
Match: AT3G20890.1 (AT3G20890.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 373.6 bits (958), Expect = 9.7e-104
Identity = 190/295 (64.41%), Postives = 219/295 (74.24%), Query Frame = 1


Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQG--SSYYGTSPGSGFMYNTSPYAYVNQP--PPFP 62
           MFYRG Y DG DGREMG KRQR++DQG    +YG  P SGFMYN  PY +V  P  PPFP
Sbjct: 1   MFYRG-YGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYN--PYGFVAPPPPPPFP 60

Query: 63  VVRLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQ 122
            VRLRGLPFDC E DVVEFFHGLD+VD+LFVH+N K TGE FCVLGYPLQVDFALQ+NRQ
Sbjct: 61  AVRLRGLPFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQ 120

Query: 123 NMGRRYVEIFRSNRQEYYKAVANEVFDAR------------------------------- 182
           NMGRRYVE+FRS +QEYYKA+ANEV ++R                               
Sbjct: 121 NMGRRYVEVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRI 180

Query: 183 --GGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDSIHLT 242
             G SPRR   R++ +D+ K+  EHTG+LRLRGLP+SAGK+DILDFFK F LSED +H+T
Sbjct: 181 SGGSSPRRHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVT 240

Query: 243 LNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR 261
           +N EGRP+GEAFVEF N +DS+AAM KDR TLGSRYIELFPSS EEL+EA+SRGR
Sbjct: 241 VNGEGRPTGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292

[Close]

BLAST of Cucsa.065590 vs. TAIR10
Match: AT5G66010.1 (AT5G66010.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 228.0 bits (580), Expect = 6.6e-60
Identity = 120/255 (47.06%), Postives = 168/255 (65.88%), Query Frame = 1


Query: 12  GGDGREMGAKRQRIVDQGSSYY--GTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPFDC 71
           G  G E+G+KRQR++ Q + Y   GT P S       P+ Y      FPVVRLRGLPF+C
Sbjct: 10  GSGGYEVGSKRQRMM-QSNPYLAVGTGPTS-----FPPFGYAGG---FPVVRLRGLPFNC 69

Query: 72  METDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFR 131
            + D+ EFF GL+IVD+L V KNGKF+GE F V   P+QV+ ALQR+R NMGRRYVE+FR
Sbjct: 70  ADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFR 129

Query: 132 SNRQEYYKAVANE----VFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGK 191
            ++Q+YY AVA E     ++ R   P     R+K   E K+  E+T VL++RGLPYS  K
Sbjct: 130 CSKQDYYNAVAAEEGAYEYEVRASPPPTGPSRAKRFSE-KEKLEYTEVLKMRGLPYSVNK 189

Query: 192 DDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELF 251
             I++FF G+ + +  + +    +G+ +GEAFVEF   ++++ AM+KD+M++GSRY+ELF
Sbjct: 190 PQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELF 249

Query: 252 PSSHEELDEAISRGR 261
           P++ EE   A +R R
Sbjct: 250 PTTREEARRAEARSR 254

[Close]

BLAST of Cucsa.065590 vs. NCBI nr
Match: gi|449448717|ref|XP_004142112.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein F [Cucumis sativus])

HSP 1 Score: 532.3 bits (1370), Expect = 4.6e-148
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 1


Query: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60
           MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV
Sbjct: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60

Query: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120
           RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM
Sbjct: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120

Query: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180
           GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP
Sbjct: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180

Query: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240
           YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR
Sbjct: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240

Query: 241 YIELFPSSHEELDEAISRGR 261
           YIELFPSSHEELDEAISRGR
Sbjct: 241 YIELFPSSHEELDEAISRGR 260

[Close]

BLAST of Cucsa.065590 vs. NCBI nr
Match: gi|1009118465|ref|XP_015875875.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Ziziphus jujuba])

HSP 1 Score: 453.0 bits (1164), Expect = 3.6e-124
Identity = 214/258 (82.95%), Postives = 235/258 (91.09%), Query Frame = 1


Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRL 62
           MFYRG Y DGGDGREM AKRQR+V+QGSS+YG SPGS FMYN +PYAYV QPPPFPVV+L
Sbjct: 1   MFYRGKYNDGGDGREMSAKRQRVVEQGSSFYGASPGSSFMYNPTPYAYVGQPPPFPVVKL 60

Query: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122
           RGLPFDC ETDV EFFHGLDIVD+LFVHKNGKFTGE FCVLGYPLQVDFALQRNR NMGR
Sbjct: 61  RGLPFDCTETDVAEFFHGLDIVDVLFVHKNGKFTGEAFCVLGYPLQVDFALQRNRHNMGR 120

Query: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYS 182
           RYVE+FRS RQEYYKA+A EV DARGGSPRRS PR+K   E K++AEHTGVLRLRGLP+S
Sbjct: 121 RYVEVFRSKRQEYYKAIAYEVSDARGGSPRRSIPRAKSYSEGKETAEHTGVLRLRGLPFS 180

Query: 183 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 242
           AGKDDI++FFK F LSEDS+H T+NSEGRP+GEAFVEF+N +DSKAAM+KDRMTLGSRYI
Sbjct: 181 AGKDDIIEFFKDFVLSEDSVHFTMNSEGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYI 240

Query: 243 ELFPSSHEELDEAISRGR 261
           ELFPSSHEELDEA+SRGR
Sbjct: 241 ELFPSSHEELDEALSRGR 258

[Close]

BLAST of Cucsa.065590 vs. NCBI nr
Match: gi|645241927|ref|XP_008227311.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein F [Prunus mume])

HSP 1 Score: 448.4 bits (1152), Expect = 8.8e-123
Identity = 211/258 (81.78%), Postives = 232/258 (89.92%), Query Frame = 1


Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRL 62
           MFYRG + DGGDGR+MGAKRQR+ D GSS+YGTSPGS +MYN +PYAY  QPPPFPVV+L
Sbjct: 1   MFYRGKFGDGGDGRDMGAKRQRLGDPGSSFYGTSPGSSYMYNPTPYAYAGQPPPFPVVKL 60

Query: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122
           RGLPFDC E DV EF HGLDIVD+LFVHKNGKFTGE FCVLGYPLQVDFAL RNRQNMGR
Sbjct: 61  RGLPFDCTEADVAEFLHGLDIVDVLFVHKNGKFTGEAFCVLGYPLQVDFALSRNRQNMGR 120

Query: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYS 182
           RYVE+FRS RQEYYKA+ANEV DARGGSPRR+ PR+K  DE KDSAEHTGVLRLRGLP+S
Sbjct: 121 RYVEVFRSKRQEYYKAIANEVSDARGGSPRRNVPRAKSYDEGKDSAEHTGVLRLRGLPFS 180

Query: 183 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 242
           AGKDDI+DFFK F LSE SIH T+NSEGRP+GE FVEF++ +DSKAAM+KDRMTLGSRYI
Sbjct: 181 AGKDDIMDFFKDFVLSESSIHFTMNSEGRPTGEGFVEFASAEDSKAAMAKDRMTLGSRYI 240

Query: 243 ELFPSSHEELDEAISRGR 261
           ELFPSSHEELDEA+SRGR
Sbjct: 241 ELFPSSHEELDEAVSRGR 258

[Close]

BLAST of Cucsa.065590 vs. NCBI nr
Match: gi|694432753|ref|XP_009343715.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Pyrus x bretschneideri])

HSP 1 Score: 448.4 bits (1152), Expect = 8.8e-123
Identity = 210/258 (81.40%), Postives = 236/258 (91.47%), Query Frame = 1


Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRL 62
           MFYRG +ADGGDGREMG+KRQR+ + GSS+YGTSPGS +MYN +PYAYV QPPPFPVV+L
Sbjct: 1   MFYRGKFADGGDGREMGSKRQRLSEPGSSFYGTSPGSSYMYNPTPYAYVGQPPPFPVVKL 60

Query: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122
           RGLPFDC E DV EFFHGLDIVD+LFVHKNGKFTGE FCVLGYPLQVDFALQ+NRQNMGR
Sbjct: 61  RGLPFDCTEVDVAEFFHGLDIVDVLFVHKNGKFTGEAFCVLGYPLQVDFALQKNRQNMGR 120

Query: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYS 182
           RYVE+FRS RQEYYKA+A EV D+RGGSPRR+APR+K  DE KDSAEHTGVLRLRGLP+S
Sbjct: 121 RYVEVFRSKRQEYYKAIAQEVSDSRGGSPRRNAPRAKSYDEGKDSAEHTGVLRLRGLPFS 180

Query: 183 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 242
           AGKDDI+DFFK + LSE SIH T+NSEGRP+GE FVEF++ +DSKAAM+KDRMTLGSRYI
Sbjct: 181 AGKDDIMDFFKDYVLSESSIHFTMNSEGRPTGEGFVEFASAEDSKAAMAKDRMTLGSRYI 240

Query: 243 ELFPSSHEELDEAISRGR 261
           ELFPS+H+ELDEAISRGR
Sbjct: 241 ELFPSTHDELDEAISRGR 258

[Close]

BLAST of Cucsa.065590 vs. NCBI nr
Match: gi|593692324|ref|XP_007146704.1| (hypothetical protein PHAVU_006G062500g [Phaseolus vulgaris])

HSP 1 Score: 448.0 bits (1151), Expect = 1.2e-122
Identity = 216/261 (82.76%), Postives = 235/261 (90.04%), Query Frame = 1


Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQP---PPFPV 62
           MFYRG +ADGGDGREM AKRQR VD GSS+YGTS GS FMYN SPY YV+QP   PPFPV
Sbjct: 1   MFYRGKFADGGDGREMAAKRQRTVDPGSSFYGTSTGSNFMYNPSPYGYVSQPPPPPPFPV 60

Query: 63  VRLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQN 122
           VRLRGLPFDC ETDV EFFHGLDIVD+LFVHK GKFTGEGFCVLGYPLQVDFALQRNRQN
Sbjct: 61  VRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFTGEGFCVLGYPLQVDFALQRNRQN 120

Query: 123 MGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGL 182
           MGRRYVE+FRS RQEYYKA+ANEV DARGGSPRRSAPR+K  DE K+SAEHTGVLRLRGL
Sbjct: 121 MGRRYVEVFRSKRQEYYKAIANEVSDARGGSPRRSAPRAKSYDEGKESAEHTGVLRLRGL 180

Query: 183 PYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGS 242
           P+SA KDDI++FFK F LSEDSIH+ +NSEGRPSGEA+VEF++ +DSKAAM KDRMTLGS
Sbjct: 181 PFSASKDDIMEFFKDFGLSEDSIHIVMNSEGRPSGEAYVEFASAEDSKAAMVKDRMTLGS 240

Query: 243 RYIELFPSSHEELDEAISRGR 261
           RYIELFPSSH E++EAISRGR
Sbjct: 241 RYIELFPSSHSEMEEAISRGR 261

The following BLAST results are available for this feature:

BLAST of Cucsa.065590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HNRPF_HUMAN	1.2e-26	36.68	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	[more]
HNRPF_MACFA	1.2e-26	36.68	Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 ...	[more]
HNRPF_RAT	1.3e-25	36.68	Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus GN=Hnrnpf PE=1 SV...	[more]
HNRPF_MOUSE	1.3e-25	36.68	Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf PE=1 SV=3	[more]
HNRPF_BOVIN	1.7e-25	36.18	Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3	[more]

BLAST of Cucsa.065590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L205_CUCSA	3.2e-148	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291930 PE=4 SV=1	[more]
V7BNU2_PHAVU	8.0e-123	82.76	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G062500g PE=4 SV=1	[more]
A0A061GSA0_THECC	8.0e-123	81.15	RNA-binding family protein OS=Theobroma cacao GN=TCM_040707 PE=4 SV=1	[more]
A0A0S3S6G9_PHAAN	1.0e-122	82.76	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G190200 PE=...	[more]
F6GU40_VITVI	1.0e-122	81.78	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02220 PE=4 SV=...	[more]

BLAST of Cucsa.065590 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20890.1	9.7e-104	64.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.1	6.6e-60	47.06	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cucsa.065590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449448717\|ref\|XP_004142112.1\|	4.6e-148	100.00	PREDICTED: heterogeneous nuclear ribonucleoprotein F [Cucumis sativus]	[more]
gi\|1009118465\|ref\|XP_015875875.1\|	3.6e-124	82.95	PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Ziziphus jujuba...	[more]
gi\|645241927\|ref\|XP_008227311.1\|	8.8e-123	81.78	PREDICTED: heterogeneous nuclear ribonucleoprotein F [Prunus mume]	[more]
gi\|694432753\|ref\|XP_009343715.1\|	8.8e-123	81.40	PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Pyrus x bretschneider...	[more]
gi\|593692324\|ref\|XP_007146704.1\|	1.2e-122	82.76	hypothetical protein PHAVU_006G062500g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.065590.1	Cucsa.065590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 175..242 score: 8.0
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 173..245 score: 2.0E-8coord: 59..128 score:
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 172..260 score: 1
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 156..260 score: 3.2E-24coord: 58..138 score: 1.0
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 164..256 score: 1.13E-20coord: 51..137 score: 4.97
None	No IPR available	PANTHER	PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	coord: 1..260 score: 4.8E
None	No IPR available	PANTHER	PTHR13976:SF40	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..260 score: 4.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.065590	Cla008549	Watermelon (97103) v1	cgywmB065
Cucsa.065590	Csa4G291930	Cucumber (Chinese Long) v2	cgycuB055
Cucsa.065590	MELO3C014592	Melon (DHL92) v3.5.1	cgymeB063
Cucsa.065590	ClCG02G023210	Watermelon (Charleston Gray)	cgywcgB062
Cucsa.065590	CSPI04G13940	Wild cucumber (PI 183967)	cgycpiB055
Cucsa.065590	CmaCh20G000870	Cucurbita maxima (Rimu)	cgycmaB0101
Cucsa.065590	CmaCh02G012520	Cucurbita maxima (Rimu)	cgycmaB0103
Cucsa.065590	CmoCh02G012900	Cucurbita moschata (Rifu)	cgycmoB0098
Cucsa.065590	CmoCh20G000910	Cucurbita moschata (Rifu)	cgycmoB0096
Cucsa.065590	Lsi10G010650	Bottle gourd (USVL1VR-Ls)	cgylsiB057
Cucsa.065590	Cp4.1LG16g08930	Cucurbita pepo (Zucchini)	cgycpeB0097
Cucsa.065590	Cp4.1LG05g04890	Cucurbita pepo (Zucchini)	cgycpeB0102
Cucsa.065590	MELO3C014592.2	Melon (DHL92) v3.6.1	cgymedB062
Cucsa.065590	CsaV3_4G024280	Cucumber (Chinese Long) v3	cgycucB057
Cucsa.065590	Cla97C02G049300	Watermelon (97103) v2	cgywmbB059
Cucsa.065590	Bhi10G000231	Wax gourd	cgywgoB066
Cucsa.065590	Carg06902	Silver-seed gourd	carcgyB0594
Cucsa.065590	Carg02708	Silver-seed gourd	carcgyB1034

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.065590	Cucurbita pepo (Zucchini)	cgycpeB0100