CsaV3_4G024280 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G024280
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionheterogeneous nuclear ribonucleoprotein F
Locationchr4 : 14201225 .. 14204912 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAGGAAACCCTAATAAATTGTTGAAAGTGCCAAAGTGAATTTTTCCTGTTAGATATTTGTTGAGCTTCTTCCTCAAAATTCATGGGCCAGCCCGGAACGAAATCGGAAGGGTAGGGATCCATTGAGGCTTAACCGGAGGTCTCTTTCAGTTCCTTTCCTTCCTTCCTTCACCGTATTTGGATTTTGGAATTTCGATTCAGATTTCACAATCCAACTCAAGCTGCGACCCCTTCAACAACAATAACCAACTGGGTTATCCCCTATCAGCATGAACATGTTCTACCGAGGGTAACTTTCCCCGATCTCTATTCTCATCTTTTTCTTCTTGCTCTGTTTCGTTCCCTGTTAATTCTCACAATTTTACGTCGGTTTTGGGCTCTGGGTTCTCTTTTTTTGCTCTATATTTCATGTAATATATTGACTAATTGGGAATTCTTAGTTGTTATTATTTACTGATTATTATTGCGAACAATTATCGGTTTCCTCATCTTTCACTTCAAGAATTTTCTGCTTTCTTTTCTCGGATTGGGATTTTTTGTGGGTGTGATCGTGTGGGTGAATGTTGTTCTGGTGGAGTTTGTTTTTTTTTTTGGGTTTTTATATCTTTCTGCAAGCTCTGTACAATAGGATGGGGAGAAACAATTTAAATATGGTGTATGATTCAACTAGGAAATTAGAATAAGACCGAGGTTTTAACTTGAAAATTTAGTGTTTTTTGTTTGTTTTTGTGAGTCCTGTAGGATGATTGGTGGGCATGTTTATATGATTTAGAAAATTGATTTATTGGATTGATTGTCATCAATTAACTACTGATGTTGGTAACTCTGGGGTTTTAATGTTGACTGTATTTATAGTACACGATAATGTTTTAAATGGGAAGAAGACGCTTGATTCCCTTTGCGAGTCTGCGATAGATTGAAAAATATGGAACAGACAAGACGACCGAATTAGTTCAACCACCAAAGAAGCTTTAAATTGAAACTCTACTATATACTAGAAACAGAAATTATTTGGAGGAAGAAAGTCACCACTGAACGAAAAGTGTTAGGAACAGTGTATCAATTGTTTGCTAAGAATAAAACTTCAATTGGCTCTTTACAATGGAATTGGAGGAGGCCTTTGATATGGTTGATTGAAATTTATTGAATCAATATGCTATTGGAGAAAAAGGACTTTGGCCTGCAATTTTCTATTGTTTAACGCAAAATCTTAGGGTAGAATTAAAGCTTCAAGGGGGCGAGACTCTCAGTTTACTGAAATTTTGTCCTATTCCCTACCCTGAGGAGGTCACTCAGGTGGACAATAGCAAGAGGACTAACAAACTCTCATAGGGACCCAAACTAACTCTTATTCAATATGTTTTACCTAGAATTTGAAGATACACCTCTCTTTGAAATTCCTATTTCTACTGCCATGACGATTCCATGTCAACAGGCTGCCACCTTGTGTCATGTAACATTCATGATCTTCCTCTAGGGGTTAGTATTGGCAATGTAATCAATCATAATCTGGATTCCGGCCCTCGTTTTTAAATGGTCGTAGAGATTCTCAAATGAACAAATTTGCTCTATCGCTAGGTCATTCATGAGACCTTTCTCACTGATTAATCTCATATGGCCATAACCCCTATACTATTTTACTATGAAAAACAAATGTAGTAAGAGAGCTGACTATCAGGATTGGAGAGTTAAACTTCTAATTTAATACTGAAGACATCTCAAGGATGAGGAACTCCCAAATATTCGAGAGCTCTTGCAGGAACTAGCTCATTTAGGACACTGACCAATCTGCTAGGAAGAAGAAATTTGGGGTCTGGACAAATATGTTCGCAAGATTGATACCTTTTAGGAGAGTTGTACTAAACACCTTTAAGGAGTTGCTCGCATGATTGCATCCCTCTTCTTTTAGTCTCCAATAATATGCAGAGTCATCTCTTCCTATGCTTCAATTATGTATCTAACCTCTGGAGAAACCCTCACTCTCTTGATTAGCCTCTACAAAAGAGGATGAAATAATCTGTGTCAGTTTATCTGCTCTTGTCTATAACCATGGTGAAGTTTAATGTAGTCCATTATCGGGGTTGGTGGTTGTGGAATAACTGAGGGTATTGGTATTTGGCAATGCATATTTGCAGTTGATTTAGAAGCGTCTGCCTTATATATATAAATGTATGTATGTATGTATGTATATTTATACACACATAGATATCTTCTGTGTTTTGGGAAACAGTGAAGTTTCCCACATTCGTTTAATATGGGAAACTTGAAATTGCAGATTAATATTTTTGTGGCCAAGAAAACATTAGATGTGTATAGGAGCCATCTATTTGTTACTGGAGCAATTAATTTGAGAAATGCTTTTGTTTGAATTTCAAAATATGTTATTATCTCCCAGGATGGGATATTGACAAGGTTCCTGTTTTTTGTGGATTTCTTGTTTCTGTTTGGACTAAAGTTCATACGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTCGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCGTATGCGTATGTTAATCAGCCTCCACCATTTCCTGTTGTCAGACTACGGGGTTTGCCTTTCGATTGCATGGAAACTGATGTCGTTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTCGTCCACAAGAACGGCAAATTCACAGGGGAAGGTTTTTGTGTCTTGGGTTATCCTCTCCAGGTTGATTTTGCCCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGTCAAGAATACTACAAGGCTGTAGCTAATGAAGTTTTTGATGCCCGGGGTGGGTCACCGAGAAGAAGTGCCCCAAGGTCCAAGTTAAACGATGAGGTGAAAGACTCTGCTGAGCACACCGGTGTATTACGCTTGAGAGGACTGCCATATTCTGCAGGCAAAGATGACATACTGGACTTCTTCAAAGGTTTCAACTTATCAGAAGACTCAATTCATTTGACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTTGAATTCTCAAACGAACAAGACTCAAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGCTACATTGAGTTGTTCCCATCATCACATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGACACCACCTATAATTCTATTCACTGTTCTTCTTCAACTACTATGTTGTTTTGCTTTTGGAGCCAATGAGATTTATGGAGTTAGAAGTGAATAGGAGAGCTAAGTTTGTTTTGTGTGCTTATGGTAACCATACATTCTCTGTACTTTCCAGGACCATTATTTGCCAGTCGAGCAGGTTGTTTCGCACTCGACTGCATGAATTTGTGAAAAGAATTTGGTTTAGTAGGCCTCTCTCTATATGATGTATTAACCGTTTCTCTGTGCTGATGCTTAAAATATCTCCACCCTTGTGTACTACAGCATTTGCTCGCACAAAATTTTCAAAATTTACAAGTTAGATCCTTATTTCAGGTAAATGCTGTACTTCAGTTTTGTTTTATAACCTCTGACATTTCCTTCTTTAAATTAAAGTTGAAAGGTGAGGGAGAAAGATTGAAAATTGGAAACTGTATGTGTAGGCAACAATTGAG

mRNA sequence

ATGAACATGTTCTACCGAGGTTCATACGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTCGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCGTATGCGTATGTTAATCAGCCTCCACCATTTCCTGTTGTCAGACTACGGGGTTTGCCTTTCGATTGCATGGAAACTGATGTCGTTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTCGTCCACAAGAACGGCAAATTCACAGGGGAAGGTTTTTGTGTCTTGGGTTATCCTCTCCAGGTTGATTTTGCCCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGTCAAGAATACTACAAGGCTGTAGCTAATGAAGTTTTTGATGCCCGGGGTGGGTCACCGAGAAGAAGTGCCCCAAGGTCCAAGTTAAACGATGAGGTGAAAGACTCTGCTGAGCACACCGGTGTATTACGCTTGAGAGGACTGCCATATTCTGCAGGCAAAGATGACATACTGGACTTCTTCAAAGGTTTCAACTTATCAGAAGACTCAATTCATTTGACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTTGAATTCTCAAACGAACAAGACTCAAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGCTACATTGAGTTGTTCCCATCATCACATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGA

Coding sequence (CDS)

ATGAACATGTTCTACCGAGGTTCATACGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTCGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCGTATGCGTATGTTAATCAGCCTCCACCATTTCCTGTTGTCAGACTACGGGGTTTGCCTTTCGATTGCATGGAAACTGATGTCGTTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTCGTCCACAAGAACGGCAAATTCACAGGGGAAGGTTTTTGTGTCTTGGGTTATCCTCTCCAGGTTGATTTTGCCCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGTCAAGAATACTACAAGGCTGTAGCTAATGAAGTTTTTGATGCCCGGGGTGGGTCACCGAGAAGAAGTGCCCCAAGGTCCAAGTTAAACGATGAGGTGAAAGACTCTGCTGAGCACACCGGTGTATTACGCTTGAGAGGACTGCCATATTCTGCAGGCAAAGATGACATACTGGACTTCTTCAAAGGTTTCAACTTATCAGAAGACTCAATTCATTTGACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTTGAATTCTCAAACGAACAAGACTCAAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGCTACATTGAGTTGTTCCCATCATCACATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGA

Protein sequence

MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR
Homology
[Close]
BLAST of CsaV3_4G024280 vs. NCBI nr
Match: XP_004142112.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein F [Cucumis sativus] >XP_008449713.1 PREDICTED: heterogeneous nuclear ribonucleoprotein F [Cucumis melo] >KGN54181.1 hypothetical protein Csa_4G291930 [Cucumis sativus])

HSP 1 Score: 532.3 bits (1370), Expect = 9.0e-148
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0 

Query: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60
           MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV
Sbjct: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60

Query: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120
           RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM
Sbjct: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120

Query: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180
           GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP
Sbjct: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180

Query: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240
           YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR
Sbjct: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240

Query: 241 YIELFPSSHEELDEAISRGR 261
           YIELFPSSHEELDEAISRGR
Sbjct: 241 YIELFPSSHEELDEAISRGR 260

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BLAST of CsaV3_4G024280 vs. NCBI nr
Match: XP_022986707.1 (heterogeneous nuclear ribonucleoprotein F-like [Cucurbita maxima])

HSP 1 Score: 505.8 bits (1301), Expect = 9.1e-140
Identity = 245/258 (94.96%), Postives = 251/258 (97.29%), Query Frame = 0 

Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRL 62
           MFYRG YADGGDGREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYA V+QPPPFPVVRL
Sbjct: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRL 60

Query: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122
           RGLPFDCMETDVVEFFHGLD+VD+LFVHKNGKFTGEGFCVLGYPLQ+DFALQRNRQNMGR
Sbjct: 61  RGLPFDCMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGR 120

Query: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYS 182
           RYVE+FRSNRQEYYKAVANEVFDA GGSPRR+APRSKL DEVKDSAEHTGVLRLRGLPYS
Sbjct: 121 RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180

Query: 183 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 242
           AGKDDILDFFKGF LSEDSIHLT NSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI
Sbjct: 181 AGKDDILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 240

Query: 243 ELFPSSHEELDEAISRGR 261
           ELFPSSHEELDEAISRGR
Sbjct: 241 ELFPSSHEELDEAISRGR 258

[Close]
BLAST of CsaV3_4G024280 vs. NCBI nr
Match: XP_023511865.1 (heterogeneous nuclear ribonucleoprotein H3-like [Cucurbita pepo subsp. pepo] >XP_023511866.1 heterogeneous nuclear ribonucleoprotein H3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 505.4 bits (1300), Expect = 1.2e-139
Identity = 246/258 (95.35%), Postives = 251/258 (97.29%), Query Frame = 0 

Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRL 62
           MFYRG YADGGDGREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYA V+QPPPFPVVRL
Sbjct: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRL 60

Query: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122
           RGLPFDCMETDVVEFFHGLD+VDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 61  RGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120

Query: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYS 182
           RYVE+FRSNRQEYYKAVANEVFDA GGSPRR+APRSKL DEVKDSAEHTGVLRLRGLPYS
Sbjct: 121 RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180

Query: 183 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 242
           AGKDDILDFFK F LSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI
Sbjct: 181 AGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 240

Query: 243 ELFPSSHEELDEAISRGR 261
           ELFPSSHEELDEA+SRGR
Sbjct: 241 ELFPSSHEELDEALSRGR 258

[Close]
BLAST of CsaV3_4G024280 vs. NCBI nr
Match: XP_022958677.1 (heterogeneous nuclear ribonucleoprotein F-like [Cucurbita moschata])

HSP 1 Score: 503.8 bits (1296), Expect = 3.4e-139
Identity = 244/258 (94.57%), Postives = 251/258 (97.29%), Query Frame = 0 

Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRL 62
           MFYRGS+ADGGDGREMGAKRQRIVDQGSSYYGTSPG+GFMYN SPYAYV QPPPFPVVRL
Sbjct: 1   MFYRGSFADGGDGREMGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRL 60

Query: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122
           RGLPFDCMETDV EFFHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 61  RGLPFDCMETDVAEFFHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120

Query: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYS 182
           RYVEIFRSNRQEYYKAVANEVFDARGGSPRR+APRSKLNDEVKD AEHTG+LRLRGLPYS
Sbjct: 121 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYS 180

Query: 183 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 242
           AGKDDILDFFKGF LSED IHLTLNSEGRPSGEAFVEF+NEQDSKAAMSKDRMTLGSRYI
Sbjct: 181 AGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYI 240

Query: 243 ELFPSSHEELDEAISRGR 261
           ELFPSS EELDEAI+RGR
Sbjct: 241 ELFPSSQEELDEAIARGR 258

[Close]
BLAST of CsaV3_4G024280 vs. NCBI nr
Match: XP_022944575.1 (heterogeneous nuclear ribonucleoprotein F-like [Cucurbita moschata])

HSP 1 Score: 502.7 bits (1293), Expect = 7.7e-139
Identity = 245/258 (94.96%), Postives = 250/258 (96.90%), Query Frame = 0 

Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRL 62
           MFYRG YADGGDGREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYA V+QPPPFPVVRL
Sbjct: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRL 60

Query: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122
           RGLPFDCMETDVVEFFHGLD+VDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 61  RGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120

Query: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYS 182
           RYVE+FRSNRQEYYKAVANEVF+A GGSPRR+APRSKL DEVKDSAEHTGVLRLRGLPYS
Sbjct: 121 RYVEVFRSNRQEYYKAVANEVFEASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180

Query: 183 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 242
           AGKDDILDFFK F LSEDSIHLTLNSEGRPSGEAFVEFSNE DSKAAMSKDRMTLGSRYI
Sbjct: 181 AGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYI 240

Query: 243 ELFPSSHEELDEAISRGR 261
           ELFPSSHEELDEAISRGR
Sbjct: 241 ELFPSSHEELDEAISRGR 258

[Close]
BLAST of CsaV3_4G024280 vs. TAIR10
Match: AT3G20890.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 351.3 bits (900), Expect = 5.2e-97
Identity = 182/295 (61.69%), Postives = 211/295 (71.53%), Query Frame = 0 

Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQG--SSYYGTSPGSGFMYNTSPYAYV--NQPPPFP 62
           MFYRG Y DG DGREMG KRQR++DQG    +YG  P SGFMYN  PY +V       FP
Sbjct: 1   MFYRG-YGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYN--PYGFVAPXXXXXFP 60

Query: 63  VVRLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQ 122
            VRLRGLPFDC E DVVEFFHGLD+VD+LFVH+N K TGE FCVLGYPLQVDFALQ+NRQ
Sbjct: 61  AVRLRGLPFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQ 120

Query: 123 NMGRRYVEIFRSNRQEYYKAVANEVFDAR------------------------------- 182
           NMGRRYVE+FRS +QEYYKA+ANEV ++R                               
Sbjct: 121 NMGRRYVEVFRSTKQEYYKAIANEVAESRVHGMAXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 183 --GGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDSIHLT 242
                      R++ +D+ K+  EHTG+LRLRGLP+SAGK+DILDFFK F LSED +H+T
Sbjct: 181 XXXXXXXXXXXRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVT 240

Query: 243 LNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR 261
           +N EGRP+GEAFVEF N +DS+AAM KDR TLGSRYIELFPSS EEL+EA+SRGR
Sbjct: 241 VNGEGRPTGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292

[Close]
BLAST of CsaV3_4G024280 vs. TAIR10
Match: AT5G66010.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 228.0 bits (580), Expect = 6.6e-60
Identity = 120/255 (47.06%), Postives = 168/255 (65.88%), Query Frame = 0 

Query: 12  GGDGREMGAKRQRIVDQGSSY--YGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPFDC 71
           G  G E+G+KRQR++ Q + Y   GT P S       P+ Y      FPVVRLRGLPF+C
Sbjct: 10  GSGGYEVGSKRQRMM-QSNPYLAVGTGPTS-----FPPFGYAG---GFPVVRLRGLPFNC 69

Query: 72  METDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFR 131
            + D+ EFF GL+IVD+L V KNGKF+GE F V   P+QV+ ALQR+R NMGRRYVE+FR
Sbjct: 70  ADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFR 129

Query: 132 SNRQEYYKAVANE----VFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGK 191
            ++Q+YY AVA E     ++ R   P     R+K   E K+  E+T VL++RGLPYS  K
Sbjct: 130 CSKQDYYNAVAAEEGAYEYEVRASPPPTGPSRAKRFSE-KEKLEYTEVLKMRGLPYSVNK 189

Query: 192 DDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELF 251
             I++FF G+ + +  + +    +G+ +GEAFVEF   ++++ AM+KD+M++GSRY+ELF
Sbjct: 190 PQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELF 249

Query: 252 PSSHEELDEAISRGR 261
           P++ EE   A +R R
Sbjct: 250 PTTREEARRAEARSR 254

[Close]
BLAST of CsaV3_4G024280 vs. TAIR10
Match: AT4G19610.1 (nucleotide binding;nucleic acid binding;RNA binding)

HSP 1 Score: 44.3 bits (103), Expect = 1.4e-04
Identity = 26/93 (27.96%), Postives = 49/93 (52.69%), Query Frame = 0 

Query: 164 VKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPS-GEAFVEFSN 223
           V D    TG L +R LPY+A ++++++ F  F    + +HL L+ E + S G A++ +  
Sbjct: 286 VSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISE-VHLVLDKETKRSRGIAYILYLI 345

Query: 224 EQDSKAAMSK-DRMTLGSRYIELFPSSHEELDE 255
            + +  AM + D  +   R + + P+ H E  +
Sbjct: 346 PECAARAMEELDNSSFQGRLLHILPAKHRETSD 377

[Close]
BLAST of CsaV3_4G024280 vs. Swiss-Prot
Match: sp|P52597|HNRPF_HUMAN (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 123.6 bits (309), Expect = 3.2e-27
Identity = 73/199 (36.68%), Postives = 116/199 (58.29%), Query Frame = 0 

Query: 59  VVRLRGLPFDCMETDVVEFFHGLDIVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 118
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 119 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGV 178
           +++R++MG RY+E+F+S+R E    +            + S P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADSA-NDGF 131

Query: 179 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 238
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 239 RMTLGSRYIELFPSSHEEL 253
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]
BLAST of CsaV3_4G024280 vs. Swiss-Prot
Match: sp|Q60HC3|HNRPF_MACFA (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 123.6 bits (309), Expect = 3.2e-27
Identity = 73/199 (36.68%), Postives = 116/199 (58.29%), Query Frame = 0 

Query: 59  VVRLRGLPFDCMETDVVEFFHGLDIVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 118
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 119 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGV 178
           +++R++MG RY+E+F+S+R E    +            + S P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADSA-NDGF 131

Query: 179 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 238
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 239 RMTLGSRYIELFPSSHEEL 253
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]
BLAST of CsaV3_4G024280 vs. Swiss-Prot
Match: sp|Q9Z2X1|HNRPF_MOUSE (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 120.2 bits (300), Expect = 3.5e-26
Identity = 72/199 (36.18%), Postives = 115/199 (57.79%), Query Frame = 0 

Query: 59  VVRLRGLPFDCMETDVVEFFHGLDIVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 118
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 119 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGV 178
           +++R++MG RY+E+F+S+R E    +            + S P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADSA-NDGF 131

Query: 179 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 238
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 239 RMTLGSRYIELFPSSHEEL 253
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]
BLAST of CsaV3_4G024280 vs. Swiss-Prot
Match: sp|Q794E4|HNRPF_RAT (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus OX=10116 GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 120.2 bits (300), Expect = 3.5e-26
Identity = 72/199 (36.18%), Postives = 115/199 (57.79%), Query Frame = 0 

Query: 59  VVRLRGLPFDCMETDVVEFFHGLDIVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 118
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 119 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGV 178
           +++R++MG RY+E+F+S+R E    +            + S P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADSA-NDGF 131

Query: 179 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 238
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 239 RMTLGSRYIELFPSSHEEL 253
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]
BLAST of CsaV3_4G024280 vs. Swiss-Prot
Match: sp|Q5E9J1|HNRPF_BOVIN (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 4.6e-26
Identity = 71/199 (35.68%), Postives = 115/199 (57.79%), Query Frame = 0 

Query: 59  VVRLRGLPFDCMETDVVEFFHGLDIVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 118
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 119 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGV 178
           +++R++MG RY+E+F+S+R E    +            + S P S       D+A + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADTA-NDGF 131

Query: 179 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 238
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 239 RMTLGSRYIELFPSSHEEL 253
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]
BLAST of CsaV3_4G024280 vs. TrEMBL
Match: tr|A0A1S3BMM3|A0A1S3BMM3_CUCME (heterogeneous nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC103491509 PE=4 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 6.0e-148
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0 

Query: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60
           MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV
Sbjct: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60

Query: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120
           RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM
Sbjct: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120

Query: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180
           GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP
Sbjct: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180

Query: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240
           YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR
Sbjct: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240

Query: 241 YIELFPSSHEELDEAISRGR 261
           YIELFPSSHEELDEAISRGR
Sbjct: 241 YIELFPSSHEELDEAISRGR 260

[Close]
BLAST of CsaV3_4G024280 vs. TrEMBL
Match: tr|A0A0A0L205|A0A0A0L205_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 6.0e-148
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0 

Query: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60
           MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV
Sbjct: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60

Query: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120
           RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM
Sbjct: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120

Query: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180
           GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP
Sbjct: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180

Query: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240
           YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR
Sbjct: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240

Query: 241 YIELFPSSHEELDEAISRGR 261
           YIELFPSSHEELDEAISRGR
Sbjct: 241 YIELFPSSHEELDEAISRGR 260

[Close]
BLAST of CsaV3_4G024280 vs. TrEMBL
Match: tr|A0A2P5CDG8|A0A2P5CDG8_PARAD (Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_161800 PE=4 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 1.3e-123
Identity = 213/258 (82.56%), Postives = 234/258 (90.70%), Query Frame = 0 

Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRL 62
           MFYRG YADGGDGREMGAKRQR+V+QGSS+YGTSPG  FMYN +P+AYV QPPPFPVV+L
Sbjct: 1   MFYRGKYADGGDGREMGAKRQRVVEQGSSFYGTSPGPSFMYNPTPFAYVGQPPPFPVVKL 60

Query: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122
           RGLPFDC E  V EFFHGLDIVD+LFVHKNGKFTGE FCV GYPLQVDFALQRNRQNMGR
Sbjct: 61  RGLPFDCTEVHVAEFFHGLDIVDVLFVHKNGKFTGEAFCVFGYPLQVDFALQRNRQNMGR 120

Query: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYS 182
           RYVE+FRS RQEYYKA+A EV D+RGGSPRRS PRSK  DE KD+AEHTG+LRLRGLP+S
Sbjct: 121 RYVEVFRSKRQEYYKAIAGEVLDSRGGSPRRSIPRSKSYDEGKDTAEHTGILRLRGLPFS 180

Query: 183 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 242
           AGKDDI++FFK F L EDSIH TLNSEGRP+GEAFVEF++ +DSKAAM+KDRMTLGSRYI
Sbjct: 181 AGKDDIIEFFKDFVLLEDSIHFTLNSEGRPTGEAFVEFASAEDSKAAMAKDRMTLGSRYI 240

Query: 243 ELFPSSHEELDEAISRGR 261
           ELFPSSHEELDEA+ RGR
Sbjct: 241 ELFPSSHEELDEALLRGR 258

[Close]
BLAST of CsaV3_4G024280 vs. TrEMBL
Match: tr|A0A2P5EUG4|A0A2P5EUG4_9ROSA (Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_150300 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 1.1e-122
Identity = 212/258 (82.17%), Postives = 233/258 (90.31%), Query Frame = 0 

Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRL 62
           MFYRG YADGGDGREMGAKRQR+V+QGSS+YGTSPG  FMYN +P+AYV QPPPFPVV+L
Sbjct: 1   MFYRGKYADGGDGREMGAKRQRVVEQGSSFYGTSPGPSFMYNPTPFAYVGQPPPFPVVKL 60

Query: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122
           RGLPFDC E  V EFFHGLDIVD+LFVHKNGKFTGE FCV GYPLQVDFALQRNRQNMGR
Sbjct: 61  RGLPFDCTEVHVAEFFHGLDIVDVLFVHKNGKFTGEAFCVFGYPLQVDFALQRNRQNMGR 120

Query: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYS 182
           RYVE+FRS RQEYYKA+A EV D+R GSPRRS PRSK  DE KD+AEHTG+LRLRGLP+S
Sbjct: 121 RYVEVFRSKRQEYYKAIAGEVSDSRSGSPRRSIPRSKSYDEGKDTAEHTGILRLRGLPFS 180

Query: 183 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 242
           AGKDDI++FFK F L EDSIH TLNSEGRP+GEAFVEF++ +DSKAAM+KDRMTLGSRYI
Sbjct: 181 AGKDDIIEFFKDFVLLEDSIHFTLNSEGRPTGEAFVEFASAEDSKAAMAKDRMTLGSRYI 240

Query: 243 ELFPSSHEELDEAISRGR 261
           ELFPSSHEELDEA+ RGR
Sbjct: 241 ELFPSSHEELDEALLRGR 258

[Close]
BLAST of CsaV3_4G024280 vs. TrEMBL
Match: tr|F6GU40|F6GU40_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g02220 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 1.9e-122
Identity = 211/258 (81.78%), Postives = 235/258 (91.09%), Query Frame = 0 

Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRL 62
           MFYRG YADG DGR+MG KRQRI DQGSS+YG SPGS FMYN SPY+Y+ QPPPFPVVRL
Sbjct: 1   MFYRGKYADGLDGRDMGPKRQRITDQGSSFYGGSPGSNFMYNASPYSYIGQPPPFPVVRL 60

Query: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122
           RGLPFDC E DV EFFH LDIVD+LFVHKNG+FTGE FCVLGYPLQV+FALQRNRQNMGR
Sbjct: 61  RGLPFDCSEADVAEFFHSLDIVDVLFVHKNGRFTGEAFCVLGYPLQVEFALQRNRQNMGR 120

Query: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYS 182
           RYVE+FRS RQEYYKA+ANEV D RGGSPRR+AP++K NDE K+SAEHTGVLRLRGLP+S
Sbjct: 121 RYVEVFRSKRQEYYKAIANEVSDTRGGSPRRTAPKAKSNDEGKESAEHTGVLRLRGLPFS 180

Query: 183 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 242
           A K+DI+DFFK F LSEDSIH+T+NSEGRP+GEAFVEF+N +DSKAAM+KDRMTLGSRYI
Sbjct: 181 ASKEDIMDFFKDFVLSEDSIHMTVNSEGRPTGEAFVEFTNAEDSKAAMAKDRMTLGSRYI 240

Query: 243 ELFPSSHEELDEAISRGR 261
           ELFPSS EELDEA++RGR
Sbjct: 241 ELFPSSLEELDEAVARGR 258

The following BLAST results are available for this feature:
BLAST of CsaV3_4G024280 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004142112.19.0e-148100.00PREDICTED: heterogeneous nuclear ribonucleoprotein F [Cucumis sativus] >XP_00844... [more]
XP_022986707.19.1e-14094.96heterogeneous nuclear ribonucleoprotein F-like [Cucurbita maxima][more]
XP_023511865.11.2e-13995.35heterogeneous nuclear ribonucleoprotein H3-like [Cucurbita pepo subsp. pepo] >XP... [more]
XP_022958677.13.4e-13994.57heterogeneous nuclear ribonucleoprotein F-like [Cucurbita moschata][more]
XP_022944575.17.7e-13994.96heterogeneous nuclear ribonucleoprotein F-like [Cucurbita moschata][more]
BLAST of CsaV3_4G024280 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G20890.15.2e-9761.69RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G66010.16.6e-6047.06RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G19610.11.4e-0427.96nucleotide binding;nucleic acid binding;RNA binding[more]
BLAST of CsaV3_4G024280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P52597|HNRPF_HUMAN3.2e-2736.68Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1... [more]
sp|Q60HC3|HNRPF_MACFA3.2e-2736.68Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRN... [more]
sp|Q9Z2X1|HNRPF_MOUSE3.5e-2636.18Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=... [more]
sp|Q794E4|HNRPF_RAT3.5e-2636.18Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus OX=10116 GN=Hnrnp... [more]
sp|Q5E9J1|HNRPF_BOVIN4.6e-2635.68Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 S... [more]
BLAST of CsaV3_4G024280 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BMM3|A0A1S3BMM3_CUCME6.0e-148100.00heterogeneous nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC10349150... [more]
tr|A0A0A0L205|A0A0A0L205_CUCSA6.0e-148100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV=1[more]
tr|A0A2P5CDG8|A0A2P5CDG8_PARAD1.3e-12382.56Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_1618... [more]
tr|A0A2P5EUG4|A0A2P5EUG4_9ROSA1.1e-12282.17Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_150300 P... [more]
tr|F6GU40|F6GU40_VITVI1.9e-12281.78Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g02220 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G024280.1CsaV3_4G024280.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 59..128
e-value: 0.12
score: 14.6
coord: 173..245
e-value: 2.0E-8
score: 44.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 175..242
e-value: 9.0E-10
score: 38.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 172..260
score: 10.19
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 153..260
e-value: 3.9E-29
score: 102.8
coord: 48..145
e-value: 7.9E-19
score: 69.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..166
NoneNo IPR availablePANTHERPTHR13976HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATEDcoord: 3..260
NoneNo IPR availablePANTHERPTHR13976:SF61RNA-BINDING RRM/RBD/RNP MOTIFS FAMILY PROTEINcoord: 3..260
NoneNo IPR availableCDDcd12254RRM_hnRNPH_ESRPs_RBM12_likecoord: 173..245
e-value: 3.54565E-30
score: 108.413
NoneNo IPR availableCDDcd12254RRM_hnRNPH_ESRPs_RBM12_likecoord: 59..128
e-value: 6.20806E-21
score: 82.9903
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 164..256
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 51..137

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G024280CSPI04G13940Wild cucumber (PI 183967)cpicucB212
CsaV3_4G024280Cucsa.065590Cucumber (Gy14) v1cgycucB057
CsaV3_4G024280CmaCh20G000870Cucurbita maxima (Rimu)cmacucB0660
CsaV3_4G024280CmaCh02G012520Cucurbita maxima (Rimu)cmacucB0726
CsaV3_4G024280CmoCh20G000910Cucurbita moschata (Rifu)cmocucB0645
CsaV3_4G024280CmoCh02G012900Cucurbita moschata (Rifu)cmocucB0713
CsaV3_4G024280Cp4.1LG16g08930Cucurbita pepo (Zucchini)cpecucB0346
CsaV3_4G024280Cp4.1LG05g04890Cucurbita pepo (Zucchini)cpecucB0908
CsaV3_4G024280CsGy4G013510Cucumber (Gy14) v2cgybcucB171
CsaV3_4G024280Carg06902Silver-seed gourdcarcucB0559
CsaV3_4G024280Carg02708Silver-seed gourdcarcucB0960
CsaV3_4G024280Cla008549Watermelon (97103) v1cucwmB364
CsaV3_4G024280MELO3C014592Melon (DHL92) v3.5.1cucmeB294
CsaV3_4G024280ClCG02G023210Watermelon (Charleston Gray)cucwcgB305
CsaV3_4G024280Lsi10G010650Bottle gourd (USVL1VR-Ls)cuclsiB269
CsaV3_4G024280MELO3C014592.2Melon (DHL92) v3.6.1cucmedB286
CsaV3_4G024280Cla97C02G049300Watermelon (97103) v2cucwmbB293
CsaV3_4G024280Bhi10G000231Wax gourdcucwgoB396
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G024280Cucurbita maxima (Rimu)cmacucB0850
CsaV3_4G024280Cucurbita maxima (Rimu)cmacucB0853
CsaV3_4G024280Cucurbita moschata (Rifu)cmocucB0080
CsaV3_4G024280Cucurbita moschata (Rifu)cmocucB0840
CsaV3_4G024280Cucurbita moschata (Rifu)cmocucB0837
CsaV3_4G024280Cucurbita pepo (Zucchini)cpecucB0508
CsaV3_4G024280Cucurbita pepo (Zucchini)cpecucB0510