Carg06902 (gene) Silver-seed gourd

Overview
NameCarg06902
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionheterogeneous nuclear ribonucleoprotein F
LocationCucurbita_argyrosperma_scaffold_065 : 237791 .. 238948 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAGGTCCTAAACTTTTTAGATATTTCCACATGTGAAACTCCAAATTAAACACATTTAAAAAGTTGCAGGCAAGATTTGTATTCCCTTTCCGTATTAGCAGTTGAGTTAGAAATTGAAGCATCTGGCTTTGTTTTTTCTTGTATATATCTTCTATGTGTTCTGAAAATAGTGAACCTTCCCCACGTTTTATGTATATGGGAAACTTGAAATTGCAGATCTATATTTTTATAGCCAAGAAAGAAGTAGATGCGCATAGGAACCATGTCCTCATTTTTAGCATAGAGAAATATTTTTCTTAGATATTCGAAACATTGATTTTTTGATCTCTTAGGATGGTGTATTGACAAGGTTTCGGTTTTTGTGAATTTCATGTTTCTGTTTGGACTGAAGTCCATATGCTGATGGTGGTGATGGTCGAGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAAGGATCTTCTTATTATGGGACCCCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCCTATGCATGTGTTAGTCAGCCCCCACCATTTCCTGTTGTCAGACTACGGGGTCTCCCTTTTGATTGCATGGAAACTGATGTCGTCGAGTTCTTTCATGGTCTGGACGTAGTTGACATTCTTTTTGTCCACAAGAATGGAAAATTCACAGGGGAAGGCTTTTGTGTTTTGGGTTATCCTCTGCAGGTTGATTTTTCCCTTCAAAGGAACAGGCAAAACATGGGGCGGAGATACGTCGAGGTATTCAGGAGTAATCGACAAGAATACTACAAGGCCGTAGCAAATGAAGTTTTCGATGCATCGGGTGGGTCACCAAGAAGAACTGCACCCAGGTCAAAGTTAACCGACGAGGTAAAAGACTCCGCCGAACACACCGGTGTATTACGCTTGAGGGGTTTGCCATATTCGGCAGGCAAGGATGACATACTGGACTTCTTCAAAGATTTTATCTTATCAGAAGACTCCATTCATTTAACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTGGAATTCTCAAATGAGCATGACTCGAAGGCAGCCATGTCCAAGGATAGAATGACCTTAGGTAGCCGTTACATAGAGTTGTTCCCATCCTCTCATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGA

mRNA sequence

ATGAGGAGTCCATATGCTGATGGTGGTGATGGTCGAGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAAGGATCTTCTTATTATGGGACCCCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCCTATGCATGTGTTAGTCAGCCCCCACCATTTCCTGTTGTCAGACTACGGGGTCTCCCTTTTGATTGCATGGAAACTGATGTCGTCGAGTTCTTTCATGGTCTGGACGTAGTTGACATTCTTTTTGTCCACAAGAATGGAAAATTCACAGGGGAAGGCTTTTGTGTTTTGGGTTATCCTCTGCAGGTTGATTTTTCCCTTCAAAGGAACAGGCAAAACATGGGGCGGAGATACGTCGAGGTATTCAGGAGTAATCGACAAGAATACTACAAGGCCGTAGCAAATGAAGTTTTCGATGCATCGGGTGGGTCACCAAGAAGAACTGCACCCAGGTCAAAGTTAACCGACGAGGTAAAAGACTCCGCCGAACACACCGGTGTATTACGCTTGAGGGGTTTGCCATATTCGGCAGGCAAGGATGACATACTGGACTTCTTCAAAGATTTTATCTTATCAGAAGACTCCATTCATTTAACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTGGAATTCTCAAATGAGCATGACTCGAAGGCAGCCATGTCCAAGGATAGAATGACCTTAGGTAGCCGTTACATAGAGTTGTTCCCATCCTCTCATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGA

Coding sequence (CDS)

ATGAGGAGTCCATATGCTGATGGTGGTGATGGTCGAGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAAGGATCTTCTTATTATGGGACCCCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCCTATGCATGTGTTAGTCAGCCCCCACCATTTCCTGTTGTCAGACTACGGGGTCTCCCTTTTGATTGCATGGAAACTGATGTCGTCGAGTTCTTTCATGGTCTGGACGTAGTTGACATTCTTTTTGTCCACAAGAATGGAAAATTCACAGGGGAAGGCTTTTGTGTTTTGGGTTATCCTCTGCAGGTTGATTTTTCCCTTCAAAGGAACAGGCAAAACATGGGGCGGAGATACGTCGAGGTATTCAGGAGTAATCGACAAGAATACTACAAGGCCGTAGCAAATGAAGTTTTCGATGCATCGGGTGGGTCACCAAGAAGAACTGCACCCAGGTCAAAGTTAACCGACGAGGTAAAAGACTCCGCCGAACACACCGGTGTATTACGCTTGAGGGGTTTGCCATATTCGGCAGGCAAGGATGACATACTGGACTTCTTCAAAGATTTTATCTTATCAGAAGACTCCATTCATTTAACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTGGAATTCTCAAATGAGCATGACTCGAAGGCAGCCATGTCCAAGGATAGAATGACCTTAGGTAGCCGTTACATAGAGTTGTTCCCATCCTCTCATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGA

Protein sequence

MRSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR
Homology
[Close]
BLAST of Carg06902 vs. NCBI nr
Match: XP_022944575.1 (heterogeneous nuclear ribonucleoprotein F-like [Cucurbita moschata])

HSP 1 Score: 518.5 bits (1334), Expect = 1.3e-143
Identity = 252/255 (98.82%), Postives = 254/255 (99.61%), Query Frame = 0 

Query: 2   RSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 61
           R PYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL
Sbjct: 4   RGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 63

Query: 62  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYV 121
           PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDF+LQRNRQNMGRRYV
Sbjct: 64  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV 123

Query: 122 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 181
           EVFRSNRQEYYKAVANEVF+ASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK
Sbjct: 124 EVFRSNRQEYYKAVANEVFEASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 183

Query: 182 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 241
           DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF
Sbjct: 184 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 243

Query: 242 PSSHEELDEAISRGR 257
           PSSHEELDEAISRGR
Sbjct: 244 PSSHEELDEAISRGR 258

[Close]
BLAST of Carg06902 vs. NCBI nr
Match: XP_023511865.1 (heterogeneous nuclear ribonucleoprotein H3-like [Cucurbita pepo subsp. pepo] >XP_023511866.1 heterogeneous nuclear ribonucleoprotein H3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 516.2 bits (1328), Expect = 6.6e-143
Identity = 251/255 (98.43%), Postives = 253/255 (99.22%), Query Frame = 0 

Query: 2   RSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 61
           R PYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL
Sbjct: 4   RGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 63

Query: 62  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYV 121
           PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDF+LQRNRQNMGRRYV
Sbjct: 64  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV 123

Query: 122 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 181
           EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK
Sbjct: 124 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 183

Query: 182 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 241
           DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNE DSKAAMSKDRMTLGSRYIELF
Sbjct: 184 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELF 243

Query: 242 PSSHEELDEAISRGR 257
           PSSHEELDEA+SRGR
Sbjct: 244 PSSHEELDEALSRGR 258

[Close]
BLAST of Carg06902 vs. NCBI nr
Match: XP_022986707.1 (heterogeneous nuclear ribonucleoprotein F-like [Cucurbita maxima])

HSP 1 Score: 511.1 bits (1315), Expect = 2.1e-141
Identity = 248/255 (97.25%), Postives = 251/255 (98.43%), Query Frame = 0 

Query: 2   RSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 61
           R PYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL
Sbjct: 4   RGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 63

Query: 62  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYV 121
           PFDCMETDVVEFFHGLDVVD+LFVHKNGKFTGEGFCVLGYPLQ+DF+LQRNRQNMGRRYV
Sbjct: 64  PFDCMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGRRYV 123

Query: 122 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 181
           EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK
Sbjct: 124 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 183

Query: 182 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 241
           DDILDFFK FILSEDSIHLT NSEGRPSGEAFVEFSNE DSKAAMSKDRMTLGSRYIELF
Sbjct: 184 DDILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELF 243

Query: 242 PSSHEELDEAISRGR 257
           PSSHEELDEAISRGR
Sbjct: 244 PSSHEELDEAISRGR 258

[Close]
BLAST of Carg06902 vs. NCBI nr
Match: XP_004142112.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein F [Cucumis sativus] >XP_008449713.1 PREDICTED: heterogeneous nuclear ribonucleoprotein F [Cucumis melo] >KGN54181.1 hypothetical protein Csa_4G291930 [Cucumis sativus])

HSP 1 Score: 493.8 bits (1270), Expect = 3.5e-136
Identity = 241/255 (94.51%), Postives = 246/255 (96.47%), Query Frame = 0 

Query: 2   RSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 61
           R  YADGGDGREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYA V+QPPPFPVVRLRGL
Sbjct: 6   RGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGL 65

Query: 62  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYV 121
           PFDCMETDVVEFFHGLD+VDILFVHKNGKFTGEGFCVLGYPLQVDF+LQRNRQNMGRRYV
Sbjct: 66  PFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV 125

Query: 122 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 181
           E+FRSNRQEYYKAVANEVFDA GGSPRR+APRSKL DEVKDSAEHTGVLRLRGLPYSAGK
Sbjct: 126 EIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGK 185

Query: 182 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 241
           DDILDFFK F LSEDSIHLTLNSEGRPSGEAFVEFSNE DSKAAMSKDRMTLGSRYIELF
Sbjct: 186 DDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELF 245

Query: 242 PSSHEELDEAISRGR 257
           PSSHEELDEAISRGR
Sbjct: 246 PSSHEELDEAISRGR 260

[Close]
BLAST of Carg06902 vs. NCBI nr
Match: XP_023511916.1 (heterogeneous nuclear ribonucleoprotein H3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 492.3 bits (1266), Expect = 1.0e-135
Identity = 240/243 (98.77%), Postives = 242/243 (99.59%), Query Frame = 0 

Query: 14  MGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGLPFDCMETDVVEF 73
           MGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGLPFDCMETDVVEF
Sbjct: 1   MGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGLPFDCMETDVVEF 60

Query: 74  FHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYVEVFRSNRQEYYK 133
           FHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDF+LQRNRQNMGRRYVEVFRSNRQEYYK
Sbjct: 61  FHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSNRQEYYK 120

Query: 134 AVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKDFIL 193
           AVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKDFIL
Sbjct: 121 AVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKDFIL 180

Query: 194 SEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELFPSSHEELDEAIS 253
           SEDSIHLTLNSEGRPSGEAFVEFSNE DSKAAMSKDRMTLGSRYIELFPSSHEELDEA+S
Sbjct: 181 SEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEALS 240

Query: 254 RGR 257
           RGR
Sbjct: 241 RGR 243

[Close]
BLAST of Carg06902 vs. TAIR10
Match: AT3G20890.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 343.2 bits (879), Expect = 1.4e-94
Identity = 175/287 (60.98%), Postives = 202/287 (70.38%), Query Frame = 0 

Query: 5   YADGGDGREMGAKRQRIVDQG--SSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGLP 64
           Y DG DGREMG KRQR++DQG    +YG  P SGFMYN   +        FP VRLRGLP
Sbjct: 6   YGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYNPYGFVAPXXXXXFPAVRLRGLP 65

Query: 65  FDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYVE 124
           FDC E DVVEFFHGLDVVD+LFVH+N K TGE FCVLGYPLQVDF+LQ+NRQNMGRRYVE
Sbjct: 66  FDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYVE 125

Query: 125 VFRSNRQEYYKAVANEVFDA---------------------------------SGGSPRR 184
           VFRS +QEYYKA+ANEV ++                                        
Sbjct: 126 VFRSTKQEYYKAIANEVAESRVHGMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 185

Query: 185 TAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRPS 244
              R++ +D+ K+  EHTG+LRLRGLP+SAGK+DILDFFKDF LSED +H+T+N EGRP+
Sbjct: 186 XXXRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPT 245

Query: 245 GEAFVEFSNEHDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR 257
           GEAFVEF N  DS+AAM KDR TLGSRYIELFPSS EEL+EA+SRGR
Sbjct: 246 GEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292

[Close]
BLAST of Carg06902 vs. TAIR10
Match: AT5G66010.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 214.9 bits (546), Expect = 5.7e-56
Identity = 115/255 (45.10%), Postives = 163/255 (63.92%), Query Frame = 0 

Query: 8   GGDGREMGAKRQRIVDQGSSY--YGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGLPFDC 67
           G  G E+G+KRQR++ Q + Y   GT P S        +        FPVVRLRGLPF+C
Sbjct: 10  GSGGYEVGSKRQRMM-QSNPYLAVGTGPTS--------FPPFGYAGGFPVVRLRGLPFNC 69

Query: 68  METDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYVEVFR 127
            + D+ EFF GL++VD+L V KNGKF+GE F V   P+QV+ +LQR+R NMGRRYVEVFR
Sbjct: 70  ADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFR 129

Query: 128 SNRQEYYKAVANE----VFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 187
            ++Q+YY AVA E     ++     P     R+K   E K+  E+T VL++RGLPYS  K
Sbjct: 130 CSKQDYYNAVAAEEGAYEYEVRASPPPTGPSRAKRFSE-KEKLEYTEVLKMRGLPYSVNK 189

Query: 188 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 247
             I++FF  + + +  + +    +G+ +GEAFVEF    +++ AM+KD+M++GSRY+ELF
Sbjct: 190 PQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELF 249

Query: 248 PSSHEELDEAISRGR 257
           P++ EE   A +R R
Sbjct: 250 PTTREEARRAEARSR 254

[Close]
BLAST of Carg06902 vs. TAIR10
Match: AT4G19610.1 (nucleotide binding;nucleic acid binding;RNA binding)

HSP 1 Score: 42.7 bits (99), Expect = 3.9e-04
Identity = 28/94 (29.79%), Postives = 50/94 (53.19%), Query Frame = 0 

Query: 160 VKDSAEHTGVLRLRGLPYSAGKDDILDFFKDF-ILSEDSIHLTLNSEGRPS-GEAFVEFS 219
           V D    TG L +R LPY+A ++++++ F  F  +SE  +HL L+ E + S G A++ + 
Sbjct: 286 VSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISE--VHLVLDKETKRSRGIAYILYL 345

Query: 220 NEHDSKAAMSK-DRMTLGSRYIELFPSSHEELDE 251
               +  AM + D  +   R + + P+ H E  +
Sbjct: 346 IPECAARAMEELDNSSFQGRLLHILPAKHRETSD 377

[Close]
BLAST of Carg06902 vs. Swiss-Prot
Match: sp|Q8R4X3|RBM12_MOUSE (RNA-binding protein 12 OS=Mus musculus OX=10090 GN=Rbm12 PE=1 SV=3)

HSP 1 Score: 118.6 bits (296), Expect = 1.0e-25
Identity = 75/210 (35.71%), Postives = 111/210 (52.86%), Query Frame = 0 

Query: 56  VRLRGLPFDCMETDVVEFFHGL--DVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNR 115
           V + G+PF  ME DV EFFHGL  D V +L  H  G+  G G      P     +L+RNR
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNR 365

Query: 116 QNMGRRYVEVFRSNRQEYYKAVANEVFDASGG------SPRRTAPRSKLTDEVKDSAEHT 175
             M +RYVEV  +  +++  A  +  F  S G       P +T PRSK     K S   +
Sbjct: 366 MLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 425

Query: 176 G-----VLRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDS 235
                  + L+GLP+ A    ++DFFK   + EDSI++     G+ +GE FVEF N+ D 
Sbjct: 426 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADY 485

Query: 236 KAAMSKDRMTLGSRYIELFPSSHEELDEAI 253
           KAA+ + +  +G+R+I++ P + + + E I
Sbjct: 486 KAALCRHKQYMGNRFIQVHPITKKGMLEKI 514

[Close]
BLAST of Carg06902 vs. Swiss-Prot
Match: sp|P52597|HNRPF_HUMAN (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 116.7 bits (291), Expect = 3.8e-25
Identity = 70/199 (35.18%), Postives = 114/199 (57.29%), Query Frame = 0 

Query: 55  VVRLRGLPFDCMETDVVEFFHGLDVVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFSL 114
           VV+LRGLP+ C   DV  F     + D    + F++ + G+ +GE F  LG    V  +L
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 115 QRNRQNMGRRYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGV 174
           +++R++MG RY+EVF+S+R E    +            + + P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADSA-NDGF 131

Query: 175 LRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKD 234
           +RLRGLP+   K++I+ FF    +  + I L ++ EG+ +GEAFV+F+++  ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 235 RMTLGSRYIELFPSSHEEL 249
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]
BLAST of Carg06902 vs. Swiss-Prot
Match: sp|Q60HC3|HNRPF_MACFA (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 116.7 bits (291), Expect = 3.8e-25
Identity = 70/199 (35.18%), Postives = 114/199 (57.29%), Query Frame = 0 

Query: 55  VVRLRGLPFDCMETDVVEFFHGLDVVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFSL 114
           VV+LRGLP+ C   DV  F     + D    + F++ + G+ +GE F  LG    V  +L
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 115 QRNRQNMGRRYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGV 174
           +++R++MG RY+EVF+S+R E    +            + + P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADSA-NDGF 131

Query: 175 LRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKD 234
           +RLRGLP+   K++I+ FF    +  + I L ++ EG+ +GEAFV+F+++  ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 235 RMTLGSRYIELFPSSHEEL 249
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]
BLAST of Carg06902 vs. Swiss-Prot
Match: sp|Q9NTZ6|RBM12_HUMAN (RNA-binding protein 12 OS=Homo sapiens OX=9606 GN=RBM12 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.8e-25
Identity = 77/224 (34.38%), Postives = 115/224 (51.34%), Query Frame = 0 

Query: 48  SQPPPFPV------VRLRGLPFDCMETDVVEFFHGL--DVVDILFVHKNGKFTGEGFCVL 107
           S   P P+      V + G+PF  ME DV +FFHGL  D V +L  H  G+  G G    
Sbjct: 292 SSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHV-GRNNGNGLVKF 351

Query: 108 GYPLQVDFSLQRNRQNMGRRYVEVFRSNRQEYYKAVANEVFDASGG------SPRRTAPR 167
             P     +L+RNR  M +RYVEV  +  +++  A  +  F  + G       P +T PR
Sbjct: 352 LSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPR 411

Query: 168 SKLTDEVKDSAEHTG-----VLRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRP 227
           SK     K S   +       + L+GLP+ A    ++DFFK   + EDSI++     G+ 
Sbjct: 412 SKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKA 471

Query: 228 SGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELFPSSHEELDEAI 253
           +GE FVEF NE D KAA+ + +  +G+R+I++ P + + + E I
Sbjct: 472 TGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514

[Close]
BLAST of Carg06902 vs. Swiss-Prot
Match: sp|Q8SQ27|RBM12_MACMU (RNA-binding protein 12 OS=Macaca mulatta OX=9544 GN=RBM12 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.8e-25
Identity = 77/224 (34.38%), Postives = 115/224 (51.34%), Query Frame = 0 

Query: 48  SQPPPFPV------VRLRGLPFDCMETDVVEFFHGL--DVVDILFVHKNGKFTGEGFCVL 107
           S   P P+      V + G+PF  ME DV +FFHGL  D V +L  H  G+  G G    
Sbjct: 292 SSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHV-GRNNGNGLVKF 351

Query: 108 GYPLQVDFSLQRNRQNMGRRYVEVFRSNRQEYYKAVANEVFDASGG------SPRRTAPR 167
             P     +L+RNR  M +RYVEV  +  +++  A  +  F  + G       P +T PR
Sbjct: 352 LSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQSHPPPQTLPR 411

Query: 168 SKLTDEVKDSAEHTG-----VLRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRP 227
           SK     K S   +       + L+GLP+ A    ++DFFK   + EDSI++     G+ 
Sbjct: 412 SKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKA 471

Query: 228 SGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELFPSSHEELDEAI 253
           +GE FVEF NE D KAA+ + +  +G+R+I++ P + + + E I
Sbjct: 472 TGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514

[Close]
BLAST of Carg06902 vs. TrEMBL
Match: tr|A0A1S3BMM3|A0A1S3BMM3_CUCME (heterogeneous nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC103491509 PE=4 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 2.3e-136
Identity = 241/255 (94.51%), Postives = 246/255 (96.47%), Query Frame = 0 

Query: 2   RSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 61
           R  YADGGDGREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYA V+QPPPFPVVRLRGL
Sbjct: 6   RGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGL 65

Query: 62  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYV 121
           PFDCMETDVVEFFHGLD+VDILFVHKNGKFTGEGFCVLGYPLQVDF+LQRNRQNMGRRYV
Sbjct: 66  PFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV 125

Query: 122 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 181
           E+FRSNRQEYYKAVANEVFDA GGSPRR+APRSKL DEVKDSAEHTGVLRLRGLPYSAGK
Sbjct: 126 EIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGK 185

Query: 182 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 241
           DDILDFFK F LSEDSIHLTLNSEGRPSGEAFVEFSNE DSKAAMSKDRMTLGSRYIELF
Sbjct: 186 DDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELF 245

Query: 242 PSSHEELDEAISRGR 257
           PSSHEELDEAISRGR
Sbjct: 246 PSSHEELDEAISRGR 260

[Close]
BLAST of Carg06902 vs. TrEMBL
Match: tr|A0A0A0L205|A0A0A0L205_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 2.3e-136
Identity = 241/255 (94.51%), Postives = 246/255 (96.47%), Query Frame = 0 

Query: 2   RSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 61
           R  YADGGDGREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYA V+QPPPFPVVRLRGL
Sbjct: 6   RGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGL 65

Query: 62  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYV 121
           PFDCMETDVVEFFHGLD+VDILFVHKNGKFTGEGFCVLGYPLQVDF+LQRNRQNMGRRYV
Sbjct: 66  PFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV 125

Query: 122 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 181
           E+FRSNRQEYYKAVANEVFDA GGSPRR+APRSKL DEVKDSAEHTGVLRLRGLPYSAGK
Sbjct: 126 EIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGK 185

Query: 182 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 241
           DDILDFFK F LSEDSIHLTLNSEGRPSGEAFVEFSNE DSKAAMSKDRMTLGSRYIELF
Sbjct: 186 DDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELF 245

Query: 242 PSSHEELDEAISRGR 257
           PSSHEELDEAISRGR
Sbjct: 246 PSSHEELDEAISRGR 260

[Close]
BLAST of Carg06902 vs. TrEMBL
Match: tr|A0A2P5CDG8|A0A2P5CDG8_PARAD (Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_161800 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 5.7e-119
Identity = 205/255 (80.39%), Postives = 228/255 (89.41%), Query Frame = 0 

Query: 2   RSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 61
           R  YADGGDGREMGAKRQR+V+QGSS+YGT PG  FMYN +P+A V QPPPFPVV+LRGL
Sbjct: 4   RGKYADGGDGREMGAKRQRVVEQGSSFYGTSPGPSFMYNPTPFAYVGQPPPFPVVKLRGL 63

Query: 62  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYV 121
           PFDC E  V EFFHGLD+VD+LFVHKNGKFTGE FCV GYPLQVDF+LQRNRQNMGRRYV
Sbjct: 64  PFDCTEVHVAEFFHGLDIVDVLFVHKNGKFTGEAFCVFGYPLQVDFALQRNRQNMGRRYV 123

Query: 122 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 181
           EVFRS RQEYYKA+A EV D+ GGSPRR+ PRSK  DE KD+AEHTG+LRLRGLP+SAGK
Sbjct: 124 EVFRSKRQEYYKAIAGEVLDSRGGSPRRSIPRSKSYDEGKDTAEHTGILRLRGLPFSAGK 183

Query: 182 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 241
           DDI++FFKDF+L EDSIH TLNSEGRP+GEAFVEF++  DSKAAM+KDRMTLGSRYIELF
Sbjct: 184 DDIIEFFKDFVLLEDSIHFTLNSEGRPTGEAFVEFASAEDSKAAMAKDRMTLGSRYIELF 243

Query: 242 PSSHEELDEAISRGR 257
           PSSHEELDEA+ RGR
Sbjct: 244 PSSHEELDEALLRGR 258

[Close]
BLAST of Carg06902 vs. TrEMBL
Match: tr|A0A2P5EUG4|A0A2P5EUG4_9ROSA (Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_150300 PE=4 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 4.8e-118
Identity = 204/255 (80.00%), Postives = 227/255 (89.02%), Query Frame = 0 

Query: 2   RSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 61
           R  YADGGDGREMGAKRQR+V+QGSS+YGT PG  FMYN +P+A V QPPPFPVV+LRGL
Sbjct: 4   RGKYADGGDGREMGAKRQRVVEQGSSFYGTSPGPSFMYNPTPFAYVGQPPPFPVVKLRGL 63

Query: 62  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYV 121
           PFDC E  V EFFHGLD+VD+LFVHKNGKFTGE FCV GYPLQVDF+LQRNRQNMGRRYV
Sbjct: 64  PFDCTEVHVAEFFHGLDIVDVLFVHKNGKFTGEAFCVFGYPLQVDFALQRNRQNMGRRYV 123

Query: 122 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 181
           EVFRS RQEYYKA+A EV D+  GSPRR+ PRSK  DE KD+AEHTG+LRLRGLP+SAGK
Sbjct: 124 EVFRSKRQEYYKAIAGEVSDSRSGSPRRSIPRSKSYDEGKDTAEHTGILRLRGLPFSAGK 183

Query: 182 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 241
           DDI++FFKDF+L EDSIH TLNSEGRP+GEAFVEF++  DSKAAM+KDRMTLGSRYIELF
Sbjct: 184 DDIIEFFKDFVLLEDSIHFTLNSEGRPTGEAFVEFASAEDSKAAMAKDRMTLGSRYIELF 243

Query: 242 PSSHEELDEAISRGR 257
           PSSHEELDEA+ RGR
Sbjct: 244 PSSHEELDEALLRGR 258

[Close]
BLAST of Carg06902 vs. TrEMBL
Match: tr|A0A2C9UHQ1|A0A2C9UHQ1_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G002900 PE=4 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 4.8e-118
Identity = 204/255 (80.00%), Postives = 229/255 (89.80%), Query Frame = 0 

Query: 2   RSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 61
           R  Y DGGDGREMGAKRQR+VDQG S+YGT  GS FMYN  PY  V+QPPPFPVVRLRGL
Sbjct: 4   RGRYPDGGDGREMGAKRQRLVDQGPSFYGTSTGSSFMYNPPPYGYVAQPPPFPVVRLRGL 63

Query: 62  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYV 121
           PFDC ETDV EFFHGLD+VD+LFVH+ GKF+GE FCV GYPLQVDF+LQ+NRQNMGRRYV
Sbjct: 64  PFDCTETDVAEFFHGLDIVDVLFVHRGGKFSGEAFCVFGYPLQVDFALQKNRQNMGRRYV 123

Query: 122 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 181
           EVFRS RQ+YYKA+ANEV DA GGSPRR APR+K  DE KDSAEHTGVLRLRGLP+SAGK
Sbjct: 124 EVFRSKRQDYYKAIANEVSDAHGGSPRRNAPRAKSYDEGKDSAEHTGVLRLRGLPFSAGK 183

Query: 182 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 241
           DDI+DFFKDF+LSEDSIH+T+NSEGRP+GEAFVEF++  DSKAAM+KDRMTLGSRYIELF
Sbjct: 184 DDIMDFFKDFMLSEDSIHITMNSEGRPTGEAFVEFASAEDSKAAMAKDRMTLGSRYIELF 243

Query: 242 PSSHEELDEAISRGR 257
           PSS EE++EA++RGR
Sbjct: 244 PSSMEEMEEAVTRGR 258

The following BLAST results are available for this feature:
BLAST of Carg06902 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022944575.11.3e-14398.82heterogeneous nuclear ribonucleoprotein F-like [Cucurbita moschata][more]
XP_023511865.16.6e-14398.43heterogeneous nuclear ribonucleoprotein H3-like [Cucurbita pepo subsp. pepo] >XP... [more]
XP_022986707.12.1e-14197.25heterogeneous nuclear ribonucleoprotein F-like [Cucurbita maxima][more]
XP_004142112.13.5e-13694.51PREDICTED: heterogeneous nuclear ribonucleoprotein F [Cucumis sativus] >XP_00844... [more]
XP_023511916.11.0e-13598.77heterogeneous nuclear ribonucleoprotein H3-like [Cucurbita pepo subsp. pepo][more]
BLAST of Carg06902 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G20890.11.4e-9460.98RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G66010.15.7e-5645.10RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G19610.13.9e-0429.79nucleotide binding;nucleic acid binding;RNA binding[more]
BLAST of Carg06902 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8R4X3|RBM12_MOUSE1.0e-2535.71RNA-binding protein 12 OS=Mus musculus OX=10090 GN=Rbm12 PE=1 SV=3[more]
sp|P52597|HNRPF_HUMAN3.8e-2535.18Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1... [more]
sp|Q60HC3|HNRPF_MACFA3.8e-2535.18Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRN... [more]
sp|Q9NTZ6|RBM12_HUMAN3.8e-2534.38RNA-binding protein 12 OS=Homo sapiens OX=9606 GN=RBM12 PE=1 SV=1[more]
sp|Q8SQ27|RBM12_MACMU3.8e-2534.38RNA-binding protein 12 OS=Macaca mulatta OX=9544 GN=RBM12 PE=2 SV=1[more]
BLAST of Carg06902 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BMM3|A0A1S3BMM3_CUCME2.3e-13694.51heterogeneous nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC10349150... [more]
tr|A0A0A0L205|A0A0A0L205_CUCSA2.3e-13694.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV=1[more]
tr|A0A2P5CDG8|A0A2P5CDG8_PARAD5.7e-11980.39Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_1618... [more]
tr|A0A2P5EUG4|A0A2P5EUG4_9ROSA4.8e-11880.00Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_150300 P... [more]
tr|A0A2C9UHQ1|A0A2C9UHQ1_MANES4.8e-11880.00Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G002900 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06902-RACarg06902-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 55..124
e-value: 0.37
score: 10.4
coord: 169..241
e-value: 6.8E-7
score: 38.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 171..238
e-value: 1.1E-8
score: 34.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 168..256
score: 10.241
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 44..143
e-value: 4.9E-18
score: 67.0
coord: 150..256
e-value: 2.7E-28
score: 100.1
NoneNo IPR availablePANTHERPTHR13976:SF61RNA-BINDING RRM/RBD/RNP MOTIFS FAMILY PROTEINcoord: 3..256
NoneNo IPR availablePANTHERPTHR13976HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATEDcoord: 3..256
NoneNo IPR availableCDDcd12254RRM_hnRNPH_ESRPs_RBM12_likecoord: 169..241
e-value: 3.91199E-29
score: 105.332
NoneNo IPR availableCDDcd12254RRM_hnRNPH_ESRPs_RBM12_likecoord: 55..124
e-value: 3.16644E-20
score: 81.0643
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 162..252
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 47..133

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg06902Cla008549Watermelon (97103) v1carwmB0520
Carg06902Csa4G291930Cucumber (Chinese Long) v2carcuB0552
Carg06902MELO3C014592Melon (DHL92) v3.5.1carmeB0528
Carg06902ClCG02G023210Watermelon (Charleston Gray)carwcgB0503
Carg06902CSPI04G13940Wild cucumber (PI 183967)carcpiB0559
Carg06902Cucsa.065590Cucumber (Gy14) v1carcgyB0594
Carg06902CmaCh02G012520Cucurbita maxima (Rimu)carcmaB0733
Carg06902CmaCh20G000870Cucurbita maxima (Rimu)carcmaB0732
Carg06902CmoCh02G012900Cucurbita moschata (Rifu)carcmoB0710
Carg06902CmoCh20G000910Cucurbita moschata (Rifu)carcmoB0709
Carg06902Lsi10G010650Bottle gourd (USVL1VR-Ls)carlsiB471
Carg06902Cp4.1LG16g08930Cucurbita pepo (Zucchini)carcpeB0733
Carg06902Cp4.1LG05g04890Cucurbita pepo (Zucchini)carcpeB0741
Carg06902CsGy4G013510Cucumber (Gy14) v2carcgybB0529
Carg06902MELO3C014592.2Melon (DHL92) v3.6.1carmedB0533
Carg06902CsaV3_4G024280Cucumber (Chinese Long) v3carcucB0559
Carg06902Cla97C02G049300Watermelon (97103) v2carwmbB0543
Carg06902Bhi10G000231Wax gourdcarwgoB0629
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg06902Carg02708Silver-seed gourdcarcarB498
The following block(s) are covering this gene:
GeneOrganismBlock
Carg06902Silver-seed gourdcarcarB209
Carg06902Silver-seed gourdcarcarB381
Carg06902Silver-seed gourdcarcarB452
Carg06902Silver-seed gourdcarcarB463
Carg06902Cucumber (Gy14) v2carcgybB0527
Carg06902Cucumber (Gy14) v1carcgyB0599
Carg06902Cucurbita maxima (Rimu)carcmaB0726
Carg06902Cucurbita maxima (Rimu)carcmaB0727
Carg06902Cucurbita maxima (Rimu)carcmaB0730
Carg06902Cucurbita maxima (Rimu)carcmaB0734
Carg06902Cucurbita moschata (Rifu)carcmoB0703
Carg06902Cucurbita moschata (Rifu)carcmoB0704
Carg06902Cucurbita moschata (Rifu)carcmoB0707
Carg06902Cucurbita moschata (Rifu)carcmoB0711
Carg06902Cucurbita pepo (Zucchini)carcpeB0732
Carg06902Cucurbita pepo (Zucchini)carcpeB0734
Carg06902Cucurbita pepo (Zucchini)carcpeB0735
Carg06902Cucurbita pepo (Zucchini)carcpeB0740
Carg06902Wild cucumber (PI 183967)carcpiB0558
Carg06902Wild cucumber (PI 183967)carcpiB0561
Carg06902Cucumber (Chinese Long) v2carcuB0551
Carg06902Cucumber (Chinese Long) v2carcuB0554
Carg06902Cucumber (Chinese Long) v3carcucB0557
Carg06902Cucumber (Chinese Long) v3carcucB0561
Carg06902Bottle gourd (USVL1VR-Ls)carlsiB473
Carg06902Bottle gourd (USVL1VR-Ls)carlsiB477
Carg06902Melon (DHL92) v3.5.1carmeB0526
Carg06902Melon (DHL92) v3.5.1carmeB0527
Carg06902Melon (DHL92) v3.6.1carmedB0532
Carg06902Watermelon (Charleston Gray)carwcgB0505
Carg06902Watermelon (97103) v1carwmB0514
Carg06902Watermelon (97103) v1carwmB0516
Carg06902Watermelon (97103) v2carwmbB0546
Carg06902Wax gourdcarwgoB0634
Carg06902Wax gourdcarwgoB0635