CsGy4G013510 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTAAATCTCTTTGGTCGCTAACACGAACTATTTATCGATTATTATTAGATACCAATTTTAAGTTAAAATTGAAGGGAAAAAATTTATGCAAAATTAGAAGTAACAATGGAAAGGAAACCCTAATAAATTGTTGAAAGTGCCAAAGTGAATTTTTCCTGTTAGGTATTTGTTGAGCTTCTTCCTCAAAATTCATGGGCCAGCCCGGAACGAAATCGGAAGGGTAGGGATCCATTGAGGCTTAACCGGAGGTCTCTTTCAGTTCCTTTCCTTCCTTCCTTCACCGTATTTGGATTTTGGAATTTCGATTCAGATTTCACAATCCAACTCAAGCTGCGACCCCTTCAACAACAATAACCAACTGGGTTATCCCCTATCAGCATGAACATGTTCTACCGAGGGTAACTTTCCCCGATCTCTATTCTCATCTTTTTCTTCTTGCTCTGTTTCGTTCCCTGTTAATTCTCACAATTTTACGTCGGTTTTGGGCTCTGGGTTCTCTTTTTTTGCTCTATATTTCATGTAATATATTGACTAATTGGGAATTCTTAGTTGTTATTATTTACTGATTATTATTGCGAACAATTATCGGTTTCCTCATCTTTCACTTCAAGAATTTTCTGCTTTCTTTTCTCGGATTGGGATTTTTTGTGGGTGTGATCGTGTGGGTGAATGTTGTTCTGGTGGAGTTTGTTTTTTTTTTTGGGTTTTTATATCTTTCTGCAAGCTCTGTACAATAGGATGGGGAGAAACAATTTAAATATGGTGTATGATTCAACTAGGAAATTAGAATAAGACCGAGGTTTTAACTTGAAAATTTAGTGTTTTTTGTTTGTTTTTGTGAGTCCTGTAGGATGATTGGTGGGCATGTTTATATGATTTAGAAAATTGATTTATTGGATTGATTGTCATCAATTAACTACTGATGTTGGTAACTCTGGGGTTTTAATGTTGACTGTATTTATAGTGCACGATAATGTTTTAAATGGGAAGAAGACGCTTGATTCCCTTTGCGAGTCTGCGATAGATTGGAAAATATGGAACAGACAAGACGACCGAATTAGTTCAACCACCAAAGAAGCTTTAAATTGAAACTCTACTATATACTAGAAACAGAAATTATTTGGAGGAAAAAAGTCACCACTGAACGAAAAGTGTTAGGAACAGTGTATCAATTGTTTGCTAAGAATAAAACTTCAATTGGCTCTTTACAATGGAATTGGAGGAGGCCTTTGATATGGTTGATTGAAATTTATTGAATCAATATGCTATTGGAGAAAAAGGACTTTGGCCTGCAATTTTCTATTGTTTAACGCAAAGTCTTAGGGTAGAATTAAAGCTTCAAGGGGGCGAGACTCTCAGTTTACTGAAATTTTGTCCTATTCCCTACCCTGAGGAGGTCACTCAGGTGGACAATAGCAAGAGGACTAACAAACTCTCATAGGGACCCAAACTAACTCTTATTCAATATGTTTTACCTAGAATTTGAGGATACACCTCTCTTCGAAATTCCTATTTCTACTGCCATGACGATTCCATGTCAACAGGCTGCCACCTTGTGTCATGTAACATTCATGATCTTCCTCTAGGGGTTAGTATTGGCAATGTAATCAATCATAATCTGGATTCCGGCCCTCGTTTTTAAATGGTCGTAGAGATTCTCAAATGAACAAATTTGCTCTATCGCTAGGTCATTCATGAGACCTTTCTCACTGATTAATCTCATATGGCCATAACCCCTATACTATTTTACTATGAAAAACAAATGTAGTAAGAGAGCTGACTATCAGGATTGGAGAGTTAAACTTCTAATTTAATACTGAAGACATCTCAAGGATGAGGAACTCCCAAATATTCGAGAGCTCTTGCAGGAACTAGCTCATTTAGGACACTGACCAATCTGCTAGGAAGAAGAAATTTGGGGTCTGGACAAATATGTTCGCAAGATTGATACCTTTTAGGAGAGTTGTACTAAACACCTTTAAGGAGTTGCTCGCATGATTGCATCCCTCTTCTTTTAGTCTCCAATAATATGCAGAGTCATCTCTTCCTATGCTTCAATTATGTATCTAACCTCTGGAGAAACCCTCACTCTCTTGATTAGCCTCTACAAAAGAGGATGAAATAATCTGTGTCAGTTTATCTGCTCTTGTCTATAACCATGGTGAAGTTTAATGTAGTCCATTATCGGGGTTGGTGGTTGTGGAATACCTGAGGGTATTGGTATTTGGCAATGCATATTTGCAGTTGATTTAGAAGCGTCTGCCTTATATATATATAAATGTATGTATGTCTGTATGTATATTTATACACACATAGATATCTTCTGTGTTTTGGGAAACAGTGAAGTTTCCCACGTTCGTTTAATATGGGAAACTTGAAATTGCAGATTAATATTTTTGTGGCCAAGAAAACATTAGATGTGTATAGGAGCCATCTATTTGTTACTGGAGCAATTAATTTGAGAAATGCTTTTGTTTGAATTTCAAAATATATTATTATCTCCCAGGATGGGATATTGACAAGGTTCCTGTTTTTTGTGGATTTCTTGTTTCTGTTTGGACTAAAGTTCATACGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTCGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCGTATGCTTATGTTAATCAGCCTCCACCATTTCCTGTTGTCAGACTACGGGGTTTGCCTTTCGATTGCATGGAAACTGATGTCGTTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTCGTCCACAAGAACGGCAAATTCACAGGGGAAGGTTTTTGTGTCTTGGGTTATCCTCTCCAGGTTGATTTTGCCCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGTCAAGAATACTACAAGGCTGTAGCTAATGAAGTTTTTGATGCCCGGGGTGGGTCACCGAGAAGAAGTGCCCCAAGGTCCAAGTTAAACGATGAGGTGAAAGACTCTGCTGAGCACACCGGTGTATTACGCTTGAGAGGACTGCCATATTCTGCAGGCAAAGATGACATACTGGACTTCTTCAAAGGTTTCAACTTATCAGAAGACTCAATTCATTTGACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTTGAATTCTCAAACGAACAAGACTCAAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGCTACATTGAGTTGTTCCCATCATCACATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGACACCACCTATAATTCTATTCACTGTTCTTCTTCAACTACTATGTTGTTTTGCTTTTGGAGCCAATGAGATTTATGGAGTTAGAAGTGAATAGGAGAGCTAAGTTTGTTTTGTGTGCTTATGGTAACCATACATTCTCTGTACTTTCCAGGACCATTATTTGCCAGTCGAGCAGGTTGTTTCGCACTCGACTGCATGAATTTGTGAAAAGAATTTGGTTTAGTAGGCCTCTCTCTATATGATGTATTAACCGTTTCTCTGTGCTGATGCTTAAAATATCTCCACCCTTGTGTACTACAGCATTTGCTCGCACAAAATTTTCAAAATTTACAAGTTAGATCCTTATTTCAGGTGAATGCTGTACTTCAGTTTTGTTTTATAACCTCTGACATTTCCTTCTTTAAATTAAAGTTGAAAGGTGAGGGAGAAAGATTGAAAATTGGAAACTGTATGTGTAGGCAACAATTGAG CTTAAATCTCTTTGGTCGCTAACACGAACTATTTATCGATTATTATTAGATACCAATTTTAAGTTAAAATTGAAGGGAAAAAATTTATGCAAAATTAGAAGTAACAATGGAAAGGAAACCCTAATAAATTGTTGAAAGTGCCAAAGTGAATTTTTCCTGTTAGGTATTTGTTGAGCTTCTTCCTCAAAATTCATGGGCCAGCCCGGAACGAAATCGGAAGGGTAGGGATCCATTGAGGCTTAACCGGAGGTCTCTTTCAGTTCCTTTCCTTCCTTCCTTCACCGTATTTGGATTTTGGAATTTCGATTCAGATTTCACAATCCAACTCAAGCTGCGACCCCTTCAACAACAATAACCAACTGGGTTATCCCCTATCAGCATGAACATGTTCTACCGAGGTTCATACGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTCGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCGTATGCTTATGTTAATCAGCCTCCACCATTTCCTGTTGTCAGACTACGGGGTTTGCCTTTCGATTGCATGGAAACTGATGTCGTTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTCGTCCACAAGAACGGCAAATTCACAGGGGAAGGTTTTTGTGTCTTGGGTTATCCTCTCCAGGTTGATTTTGCCCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGTCAAGAATACTACAAGGCTGTAGCTAATGAAGTTTTTGATGCCCGGGGTGGGTCACCGAGAAGAAGTGCCCCAAGGTCCAAGTTAAACGATGAGGTGAAAGACTCTGCTGAGCACACCGGTGTATTACGCTTGAGAGGACTGCCATATTCTGCAGGCAAAGATGACATACTGGACTTCTTCAAAGGTTTCAACTTATCAGAAGACTCAATTCATTTGACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTTGAATTCTCAAACGAACAAGACTCAAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGCTACATTGAGTTGTTCCCATCATCACATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGACACCACCTATAATTCTATTCACTGTTCTTCTTCAACTACTATGTTGTTTTGCTTTTGGAGCCAATGAGATTTATGGAGTTAGAAGTGAATAGGAGAGCTAAGTTTGTTTTGTGTGCTTATGGTAACCATACATTCTCTGTACTTTCCAGGACCATTATTTGCCAGTCGAGCAGGTTGTTTCGCACTCGACTGCATGAATTTGTGAAAAGAATTTGGTTTAGTAGGCCTCTCTCTATATGATGTATTAACCGTTTCTCTGTGCTGATGCTTAAAATATCTCCACCCTTGTGTACTACAGCATTTGCTCGCACAAAATTTTCAAAATTTACAAGTTAGATCCTTATTTCAGGTGAATGCTGTACTTCAGTTTTGTTTTATAACCTCTGACATTTCCTTCTTTAAATTAAAGTTGAAAGGTGAGGGAGAAAGATTGAAAATTGGAAACTGTATGTGTAGGCAACAATTGAG ATGAACATGTTCTACCGAGGTTCATACGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTCGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCGTATGCTTATGTTAATCAGCCTCCACCATTTCCTGTTGTCAGACTACGGGGTTTGCCTTTCGATTGCATGGAAACTGATGTCGTTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTCGTCCACAAGAACGGCAAATTCACAGGGGAAGGTTTTTGTGTCTTGGGTTATCCTCTCCAGGTTGATTTTGCCCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGTCAAGAATACTACAAGGCTGTAGCTAATGAAGTTTTTGATGCCCGGGGTGGGTCACCGAGAAGAAGTGCCCCAAGGTCCAAGTTAAACGATGAGGTGAAAGACTCTGCTGAGCACACCGGTGTATTACGCTTGAGAGGACTGCCATATTCTGCAGGCAAAGATGACATACTGGACTTCTTCAAAGGTTTCAACTTATCAGAAGACTCAATTCATTTGACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTTGAATTCTCAAACGAACAAGACTCAAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGCTACATTGAGTTGTTCCCATCATCACATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGA MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR
BLAST of CsGy4G013510 vs. NCBI nr
Match: XP_004142112.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein F [Cucumis sativus] >XP_008449713.1 PREDICTED: heterogeneous nuclear ribonucleoprotein F [Cucumis melo] >KGN54181.1 hypothetical protein Csa_4G291930 [Cucumis sativus]) HSP 1 Score: 531.6 bits (1368), Expect = 1.5e-147 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
BLAST of CsGy4G013510 vs. NCBI nr
Match: XP_022986707.1 (heterogeneous nuclear ribonucleoprotein F-like [Cucurbita maxima]) HSP 1 Score: 505.0 bits (1299), Expect = 1.5e-139 Identity = 245/258 (94.96%), Postives = 251/258 (97.29%), Query Frame = 0
BLAST of CsGy4G013510 vs. NCBI nr
Match: XP_023511865.1 (heterogeneous nuclear ribonucleoprotein H3-like [Cucurbita pepo subsp. pepo] >XP_023511866.1 heterogeneous nuclear ribonucleoprotein H3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 504.6 bits (1298), Expect = 2.0e-139 Identity = 246/258 (95.35%), Postives = 251/258 (97.29%), Query Frame = 0
BLAST of CsGy4G013510 vs. NCBI nr
Match: XP_022958677.1 (heterogeneous nuclear ribonucleoprotein F-like [Cucurbita moschata]) HSP 1 Score: 503.1 bits (1294), Expect = 5.8e-139 Identity = 244/258 (94.57%), Postives = 251/258 (97.29%), Query Frame = 0
BLAST of CsGy4G013510 vs. NCBI nr
Match: XP_022944575.1 (heterogeneous nuclear ribonucleoprotein F-like [Cucurbita moschata]) HSP 1 Score: 501.9 bits (1291), Expect = 1.3e-138 Identity = 245/258 (94.96%), Postives = 250/258 (96.90%), Query Frame = 0
BLAST of CsGy4G013510 vs. TAIR10
Match: AT3G20890.1 (RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 350.5 bits (898), Expect = 8.8e-97 Identity = 182/295 (61.69%), Postives = 211/295 (71.53%), Query Frame = 0
BLAST of CsGy4G013510 vs. TAIR10
Match: AT5G66010.1 (RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 227.3 bits (578), Expect = 1.1e-59 Identity = 120/255 (47.06%), Postives = 168/255 (65.88%), Query Frame = 0
BLAST of CsGy4G013510 vs. TAIR10
Match: AT4G19610.1 (nucleotide binding;nucleic acid binding;RNA binding) HSP 1 Score: 43.9 bits (102), Expect = 1.8e-04 Identity = 26/93 (27.96%), Postives = 49/93 (52.69%), Query Frame = 0
BLAST of CsGy4G013510 vs. Swiss-Prot
Match: sp|P52597|HNRPF_HUMAN (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1 SV=3) HSP 1 Score: 123.2 bits (308), Expect = 4.1e-27 Identity = 73/199 (36.68%), Postives = 116/199 (58.29%), Query Frame = 0
BLAST of CsGy4G013510 vs. Swiss-Prot
Match: sp|Q60HC3|HNRPF_MACFA (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRNPF PE=2 SV=3) HSP 1 Score: 123.2 bits (308), Expect = 4.1e-27 Identity = 73/199 (36.68%), Postives = 116/199 (58.29%), Query Frame = 0
BLAST of CsGy4G013510 vs. Swiss-Prot
Match: sp|Q9Z2X1|HNRPF_MOUSE (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=1 SV=3) HSP 1 Score: 119.8 bits (299), Expect = 4.6e-26 Identity = 72/199 (36.18%), Postives = 115/199 (57.79%), Query Frame = 0
BLAST of CsGy4G013510 vs. Swiss-Prot
Match: sp|Q794E4|HNRPF_RAT (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus OX=10116 GN=Hnrnpf PE=1 SV=3) HSP 1 Score: 119.8 bits (299), Expect = 4.6e-26 Identity = 72/199 (36.18%), Postives = 115/199 (57.79%), Query Frame = 0
BLAST of CsGy4G013510 vs. Swiss-Prot
Match: sp|Q5E9J1|HNRPF_BOVIN (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 SV=3) HSP 1 Score: 119.4 bits (298), Expect = 5.9e-26 Identity = 71/199 (35.68%), Postives = 115/199 (57.79%), Query Frame = 0
BLAST of CsGy4G013510 vs. TrEMBL
Match: tr|A0A1S3BMM3|A0A1S3BMM3_CUCME (heterogeneous nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC103491509 PE=4 SV=1) HSP 1 Score: 531.6 bits (1368), Expect = 1.0e-147 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
BLAST of CsGy4G013510 vs. TrEMBL
Match: tr|A0A0A0L205|A0A0A0L205_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV=1) HSP 1 Score: 531.6 bits (1368), Expect = 1.0e-147 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
BLAST of CsGy4G013510 vs. TrEMBL
Match: tr|A0A2P5CDG8|A0A2P5CDG8_PARAD (Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_161800 PE=4 SV=1) HSP 1 Score: 450.7 bits (1158), Expect = 2.3e-123 Identity = 213/258 (82.56%), Postives = 234/258 (90.70%), Query Frame = 0
BLAST of CsGy4G013510 vs. TrEMBL
Match: tr|A0A2P5EUG4|A0A2P5EUG4_9ROSA (Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_150300 PE=4 SV=1) HSP 1 Score: 447.6 bits (1150), Expect = 1.9e-122 Identity = 212/258 (82.17%), Postives = 233/258 (90.31%), Query Frame = 0
BLAST of CsGy4G013510 vs. TrEMBL
Match: tr|F6GU40|F6GU40_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g02220 PE=4 SV=1) HSP 1 Score: 446.8 bits (1148), Expect = 3.3e-122 Identity = 211/258 (81.78%), Postives = 235/258 (91.09%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |