CmaCh20G000870 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh20G000870
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRNA-binding family protein
LocationCma_Chr20 : 369432 .. 371228 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAGTTTAGATATAATGTCAACGTTGGAGGAGGCCTTTGACATGGTTGATCGCAATTTCTTGGATTTGGTCTTGGAGAAAAAAGGGCTTTGGCCAGAAGGAGGCAAGTGAATGTTCACTTGTAATGACACTACCACATTTTTTATTTTCTCAATGGAAAACCTCATAGTAGAATTGAAGCTTCAAGAGGACAAGTTTTTACCCTACCTTGGTCTCCCGATTCTGCCCACAAGATCCCTTAATACTGCGTGAAAATCAACTATAGAGACAGCTGACTGTCAGGATTGAAGATCCAATGGCCTGGAACCTTGTCTATTGTTCTCCTGGATGAGGAGGTCCTAAACTTTTTAGATATTTCCACATGTGAAACTCCAAATTAAACACATTTAAAAAGTTGCAGGTAAGATTTGTATTCCCTTTTGGTATTAGCAGTTGAGTTAGAAATTGAAGCATCTGGCTTTGTTTTTTCTTGTATATATCTTCTATGTGTTTTGAAAATAGTGAACCTTCCCCACGTTTTATGTATATGGGAAACTTGAAATTGCAGATCTATATTTTTATAGCCAAGAAAGAAGTAGGATGCGCATAGGAGCCATGTCCTCATTTTTAGCATAGAGAAATATTTTTCTTAGATATTCGAAACATTGATTTTTTGATTTCTTAGGATGGGGTATTGACAAGGTTTCCGTTTTTGTGAATTTCATATTTCTGTTTGGACTGAAGTCCATATGCTGATGGTGGTGATGGTCGAGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAAGGATCTTCTTATTATGGGACCCCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCCTATGCATGTGTTAGTCAGCCCCCACCATTTCCTGTTGTCAGACTACGGGGTCTTCCTTTTGATTGCATGGAAACTGATGTCGTCGAGTTCTTTCATGGTCTGGACGTAGTTGACGTTCTTTTTGTCCACAAGAATGGAAAATTCACAGGGGAAGGCTTTTGTGTTTTGGGTTATCCTCTGCAGATTGATTTTGCCCTTCAGAGGAACAGGCAAAACATGGGGCGGAGATACGTCGAGGTATTCAGGAGTAATCGACAGGAATACTACAAGGCCGTAGCAAATGAAGTTTTTGATGCATCGGGTGGGTCACCAAGAAGGACTGCACCCAGGTCAAAGTTAACCGACGAGGTGAAAGACTCCGCCGAACACACGGGTGTATTACGCTTGAGGGGTTTGCCATATTCCGCGGGCAAGGATGACATACTGGACTTCTTCAAAGGTTTTATCTTATCAGAAGACTCCATTCATTTAACACAGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTGGAATTCTCAAATGAGCAAGACTCGAAGGCAGCCATGTCCAAGGATAGAATGACCTTAGGTAGCCGTTACATAGAGTTGTTCCCATCATCTCATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGACACCACCTATACTTTATTCACTGTTTTTCCTCAATTACTACGTTGTTTTACTTTAGAAAGTGTGAGATTTATGGAGGTAGAAGTGAATAGGAGGCAAGTGTGTGTTGTGTACTCTCCCGAACCATTGTTTGGCAGACGAGCAGGTCGTATCCCTCGACTGCTTGAATTTGTGAAAAGAATTGGTTTAGTAGTATATGGATTGACCATTTCTCTGGGCAGAGATGCTTAAATATCTCAAACTTATGCTTAAAATCTTCAATCCCTCTGTATCTCGATCAAAATTTACAGGTTAGATTCATATGTTGTGG

mRNA sequence

ATGTCTAGTTTAGATATAATGTCAACGTTGGAGGAGGCCTTTGACATGGTTGATCGCAATTTCTTGGATTTGGTCTTGGAGAAAAAAGGGCTTTGGCCAGAAGGAGGCAATCCATATGCTGATGGTGGTGATGGTCGAGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAAGGATCTTCTTATTATGGGACCCCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCCTATGCATGTGTTAGTCAGCCCCCACCATTTCCTGTTGTCAGACTACGGGGTCTTCCTTTTGATTGCATGGAAACTGATGTCGTCGAGTTCTTTCATGGTCTGGACGTAGTTGACGTTCTTTTTGTCCACAAGAATGGAAAATTCACAGGGGAAGGCTTTTGTGTTTTGGGTTATCCTCTGCAGATTGATTTTGCCCTTCAGAGGAACAGGCAAAACATGGGGCGGAGATACGTCGAGGTATTCAGGAGTAATCGACAGGAATACTACAAGGCCGTAGCAAATGAAGTTTTTGATGCATCGGGTGGGTCACCAAGAAGGACTGCACCCAGGTCAAAGTTAACCGACGAGGTGAAAGACTCCGCCGAACACACGGGTGTATTACGCTTGAGGGGTTTGCCATATTCCGCGGGCAAGGATGACATACTGGACTTCTTCAAAGGTTTTATCTTATCAGAAGACTCCATTCATTTAACACAGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTGGAATTCTCAAATGAGCAAGACTCGAAGGCAGCCATGTCCAAGGATAGAATGACCTTAGGTAGCCGTTACATAGAGTTGTTCCCATCATCTCATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGACACCACCTATACTTTATTCACTGTTTTTCCTCAATTACTACGTTGTTTTACTTTAGAAAGTGTGAGATTTATGGAGGTAGAAGTGAATAGGAGGCAAGTGTGTGTTGTGTACTCTCCCGAACCATTGTTTGGCAGACGAGCAGGTCGTATCCCTCGACTGCTTGAATTTGTGAAAAGAATTGGTTTAGTAGTATATGGATTGACCATTTCTCTGGGCAGAGATGCTTAAATATCTCAAACTTATGCTTAAAATCTTCAATCCCTCTGTATCTCGATCAAAATTTACAGGTTAGATTCATATGTTGTGG

Coding sequence (CDS)

ATGTCTAGTTTAGATATAATGTCAACGTTGGAGGAGGCCTTTGACATGGTTGATCGCAATTTCTTGGATTTGGTCTTGGAGAAAAAAGGGCTTTGGCCAGAAGGAGGCAATCCATATGCTGATGGTGGTGATGGTCGAGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAAGGATCTTCTTATTATGGGACCCCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCCTATGCATGTGTTAGTCAGCCCCCACCATTTCCTGTTGTCAGACTACGGGGTCTTCCTTTTGATTGCATGGAAACTGATGTCGTCGAGTTCTTTCATGGTCTGGACGTAGTTGACGTTCTTTTTGTCCACAAGAATGGAAAATTCACAGGGGAAGGCTTTTGTGTTTTGGGTTATCCTCTGCAGATTGATTTTGCCCTTCAGAGGAACAGGCAAAACATGGGGCGGAGATACGTCGAGGTATTCAGGAGTAATCGACAGGAATACTACAAGGCCGTAGCAAATGAAGTTTTTGATGCATCGGGTGGGTCACCAAGAAGGACTGCACCCAGGTCAAAGTTAACCGACGAGGTGAAAGACTCCGCCGAACACACGGGTGTATTACGCTTGAGGGGTTTGCCATATTCCGCGGGCAAGGATGACATACTGGACTTCTTCAAAGGTTTTATCTTATCAGAAGACTCCATTCATTTAACACAGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTGGAATTCTCAAATGAGCAAGACTCGAAGGCAGCCATGTCCAAGGATAGAATGACCTTAGGTAGCCGTTACATAGAGTTGTTCCCATCATCTCATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGA

Protein sequence

MSSLDIMSTLEEAFDMVDRNFLDLVLEKKGLWPEGGNPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGLPFDCMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGRRYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR
Homology
[Close]
BLAST of CmaCh20G000870 vs. Swiss-Prot
Match: HNRPF_HUMAN (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 5.0e-26
Identity = 72/199 (36.18%), Postives = 115/199 (57.79%), Query Frame = 1 

Query: 89  VVRLRGLPFDCMETDVVEFFHGLDVVD----VLFVH-KNGKFTGEGFCVLGYPLQIDFAL 148
           VV+LRGLP+ C   DV  F     + D    V F++ + G+ +GE F  LG    +  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 149 QRNRQNMGRRYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGV 208
           +++R++MG RY+EVF+S+R E    +            + + P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNSA------DSA-NDGF 131

Query: 209 LRLRGLPYSAGKDDILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKD 268
           +RLRGLP+   K++I+ FF G  +  + I L  + EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 269 RMTLGSRYIELFPSSHEEL 283
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]
BLAST of CmaCh20G000870 vs. Swiss-Prot
Match: HNRPF_MACFA (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 5.0e-26
Identity = 72/199 (36.18%), Postives = 115/199 (57.79%), Query Frame = 1 

Query: 89  VVRLRGLPFDCMETDVVEFFHGLDVVD----VLFVH-KNGKFTGEGFCVLGYPLQIDFAL 148
           VV+LRGLP+ C   DV  F     + D    V F++ + G+ +GE F  LG    +  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 149 QRNRQNMGRRYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGV 208
           +++R++MG RY+EVF+S+R E    +            + + P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNSA------DSA-NDGF 131

Query: 209 LRLRGLPYSAGKDDILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKD 268
           +RLRGLP+   K++I+ FF G  +  + I L  + EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 269 RMTLGSRYIELFPSSHEEL 283
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]
BLAST of CmaCh20G000870 vs. Swiss-Prot
Match: RBM12_MOUSE (RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE=1 SV=3)

HSP 1 Score: 118.2 bits (295), Expect = 1.5e-25
Identity = 76/210 (36.19%), Postives = 111/210 (52.86%), Query Frame = 1 

Query: 90  VRLRGLPFDCMETDVVEFFHGL--DVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNR 149
           V + G+PF  ME DV EFFHGL  D V +L  H  G+  G G      P     AL+RNR
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNR 365

Query: 150 QNMGRRYVEVFRSNRQEYYKAVANEVFDASGGS------PRRTAPRSKLTDEVKDSAEHT 209
             M +RYVEV  +  +++  A  +  F  S G       P +T PRSK     K S   +
Sbjct: 366 MLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 425

Query: 210 G-----VLRLRGLPYSAGKDDILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDS 269
                  + L+GLP+ A    ++DFFK   + EDSI++     G+ +GE FVEF N+ D 
Sbjct: 426 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADY 485

Query: 270 KAAMSKDRMTLGSRYIELFPSSHEELDEAI 287
           KAA+ + +  +G+R+I++ P + + + E I
Sbjct: 486 KAALCRHKQYMGNRFIQVHPITKKGMLEKI 514

[Close]
BLAST of CmaCh20G000870 vs. Swiss-Prot
Match: HNRPF_BOVIN (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 117.9 bits (294), Expect = 1.9e-25
Identity = 72/199 (36.18%), Postives = 112/199 (56.28%), Query Frame = 1 

Query: 89  VVRLRGLPFDCMETDVVEFFHGLDVVD-VLFVH----KNGKFTGEGFCVLGYPLQIDFAL 148
           VV+LRGLP+ C   DV  F     + D V  VH    + G+ +GE F  L     +  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 149 QRNRQNMGRRYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGV 208
           +++R++MG RY+EVF+S+R E      + V   SG +   TA              + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEM-----DWVLKHSGPNSADTA--------------NDGF 131

Query: 209 LRLRGLPYSAGKDDILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKD 268
           +RLRGLP+   K++I+ FF G  +  + I L  + EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 269 RMTLGSRYIELFPSSHEEL 283
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]
BLAST of CmaCh20G000870 vs. Swiss-Prot
Match: RBM12_PONAB (RNA-binding protein 12 OS=Pongo abelii GN=RBM12 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.2e-25
Identity = 78/224 (34.82%), Postives = 115/224 (51.34%), Query Frame = 1 

Query: 82  SQPPPFPV------VRLRGLPFDCMETDVVEFFHGL--DVVDVLFVHKNGKFTGEGFCVL 141
           S   P P+      V + G+PF  ME DV +FFHGL  D V +L  H  G+  G G    
Sbjct: 292 SSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHV-GRNNGNGLVKF 351

Query: 142 GYPLQIDFALQRNRQNMGRRYVEVFRSNRQEYYKAVANEVFDASGGS------PRRTAPR 201
             P     AL+RNR  M +RYVEV  +  +++  A  +  F  + G       P +T PR
Sbjct: 352 LSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPR 411

Query: 202 SKLTDEVKDSAEHTG-----VLRLRGLPYSAGKDDILDFFKGFILSEDSIHLTQNSEGRP 261
           SK     K S   +       + L+GLP+ A    ++DFFK   + EDSI++     G+ 
Sbjct: 412 SKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKA 471

Query: 262 SGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAI 287
           +GE FVEF NE D KAA+ + +  +G+R+I++ P + + + E I
Sbjct: 472 TGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514

[Close]
BLAST of CmaCh20G000870 vs. TrEMBL
Match: A0A0A0L205_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291930 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 8.3e-137
Identity = 240/252 (95.24%), Postives = 246/252 (97.62%), Query Frame = 1 

Query: 39  YADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGLPFD 98
           YADGGDGREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYA V+QPPPFPVVRLRGLPFD
Sbjct: 9   YADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPFD 68

Query: 99  CMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGRRYVEVF 158
           CMETDVVEFFHGLD+VD+LFVHKNGKFTGEGFCVLGYPLQ+DFALQRNRQNMGRRYVE+F
Sbjct: 69  CMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIF 128

Query: 159 RSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDDI 218
           RSNRQEYYKAVANEVFDA GGSPRR+APRSKL DEVKDSAEHTGVLRLRGLPYSAGKDDI
Sbjct: 129 RSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDDI 188

Query: 219 LDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSS 278
           LDFFKGF LSEDSIHLT NSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSS
Sbjct: 189 LDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSS 248

Query: 279 HEELDEAISRGR 291
           HEELDEAISRGR
Sbjct: 249 HEELDEAISRGR 260

[Close]
BLAST of CmaCh20G000870 vs. TrEMBL
Match: A0A061GSA0_THECC (RNA-binding family protein OS=Theobroma cacao GN=TCM_040707 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 1.1e-117
Identity = 204/254 (80.31%), Postives = 226/254 (88.98%), Query Frame = 1 

Query: 39  YADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSP--YACVSQPPPFPVVRLRGLP 98
           Y DG DGREMGAKRQRI+DQG S+YGT PGS FMYN  P  Y  VSQPPPFPVVRLRGLP
Sbjct: 7   YTDGADGREMGAKRQRIIDQGPSFYGTSPGSSFMYNAPPPPYTYVSQPPPFPVVRLRGLP 66

Query: 99  FDCMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGRRYVE 158
           FDC E DV EFFHGLD+VDVLFVHKN KFTGE FC+LGYPLQ+DFALQ+NRQNMGRRYVE
Sbjct: 67  FDCTEADVAEFFHGLDIVDVLFVHKNSKFTGEAFCILGYPLQVDFALQKNRQNMGRRYVE 126

Query: 159 VFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKD 218
           VFRS RQEYYKA+ANEV DA GGSPRR  PR+K +D+ KDSAEHTG+LRLRGLP+SAGKD
Sbjct: 127 VFRSKRQEYYKAIANEVADARGGSPRRNVPRAKSSDDAKDSAEHTGILRLRGLPFSAGKD 186

Query: 219 DILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFP 278
           DI++FFK F+LSED+IH+  NSEGRPSGEAFVEF+N +DSKAAM+KDRMTLGSRYIELFP
Sbjct: 187 DIIEFFKDFVLSEDAIHIIMNSEGRPSGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 246

Query: 279 SSHEELDEAISRGR 291
           SS EE+D+AISRGR
Sbjct: 247 SSPEEMDDAISRGR 260

[Close]
BLAST of CmaCh20G000870 vs. TrEMBL
Match: A0A067F1Q2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025001mg PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 1.5e-117
Identity = 204/253 (80.63%), Postives = 226/253 (89.33%), Query Frame = 1 

Query: 39  YADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSP-YACVSQPPPFPVVRLRGLPF 98
           +A+G DGREMGAKRQR++DQG S+YGTPP S FMYN  P Y  VSQPPPFPVVRLRGLPF
Sbjct: 7   FAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPF 66

Query: 99  DCMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGRRYVEV 158
           DC E DV EFFHGLD+VDVLFVHKN KFTGE FCVLGYPLQ+DFALQRNRQNMGRRYVEV
Sbjct: 67  DCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEV 126

Query: 159 FRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDD 218
           FRS RQEYYKA+ANEV D  GGSP R+ PR+K  DE KDSA HTG+LRLRGLP+SAGKDD
Sbjct: 127 FRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDD 186

Query: 219 ILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 278
           I+DFFK F+LSEDSIH+T NS+GRP+GEAFVEF+N +DSKAAM+KDRMTLGSRYIELFPS
Sbjct: 187 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246

Query: 279 SHEELDEAISRGR 291
           SHEE+DEA+SRGR
Sbjct: 247 SHEEMDEALSRGR 259

[Close]
BLAST of CmaCh20G000870 vs. TrEMBL
Match: V4W0L4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016322mg PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 1.5e-117
Identity = 204/253 (80.63%), Postives = 226/253 (89.33%), Query Frame = 1 

Query: 39  YADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSP-YACVSQPPPFPVVRLRGLPF 98
           +A+G DGREMGAKRQR++DQG S+YGTPP S FMYN  P Y  VSQPPPFPVVRLRGLPF
Sbjct: 7   FAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPF 66

Query: 99  DCMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGRRYVEV 158
           DC E DV EFFHGLD+VDVLFVHKN KFTGE FCVLGYPLQ+DFALQRNRQNMGRRYVEV
Sbjct: 67  DCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEV 126

Query: 159 FRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDD 218
           FRS RQEYYKA+ANEV D  GGSP R+ PR+K  DE KDSA HTG+LRLRGLP+SAGKDD
Sbjct: 127 FRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDD 186

Query: 219 ILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 278
           I+DFFK F+LSEDSIH+T NS+GRP+GEAFVEF+N +DSKAAM+KDRMTLGSRYIELFPS
Sbjct: 187 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246

Query: 279 SHEELDEAISRGR 291
           SHEE+DEA+SRGR
Sbjct: 247 SHEEMDEALSRGR 259

[Close]
BLAST of CmaCh20G000870 vs. TrEMBL
Match: A0A0D2S2A8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G128500 PE=4 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 5.6e-117
Identity = 204/254 (80.31%), Postives = 226/254 (88.98%), Query Frame = 1 

Query: 39  YADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSP--YACVSQPPPFPVVRLRGLP 98
           Y DG DGREMGAKRQRI+DQG S+YG  PGS FMY   P  Y+ VSQPPPFPVVRLRGLP
Sbjct: 7   YTDGADGREMGAKRQRIIDQGPSFYGNSPGSSFMYTAPPPPYSYVSQPPPFPVVRLRGLP 66

Query: 99  FDCMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGRRYVE 158
           FDC ETDV EFFHGLD+VDVLFVHKN KFTGE FCVLGYPLQ+DFALQ+NRQNMGRRYVE
Sbjct: 67  FDCTETDVAEFFHGLDIVDVLFVHKNSKFTGEAFCVLGYPLQVDFALQKNRQNMGRRYVE 126

Query: 159 VFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKD 218
           VFRS RQEYYKA+ANEV DA GGSPRR APR+K +DE K+SAEHTG+LRLRGLP+SAGKD
Sbjct: 127 VFRSKRQEYYKAIANEVADARGGSPRRNAPRAKSSDEAKESAEHTGILRLRGLPFSAGKD 186

Query: 219 DILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFP 278
           DI++FFK F+LSED++H+  NSEGRPSGEAFVEF+N +DSKAAMSKDRMTLGSRYIELFP
Sbjct: 187 DIMEFFKDFVLSEDAVHIVLNSEGRPSGEAFVEFTNAEDSKAAMSKDRMTLGSRYIELFP 246

Query: 279 SSHEELDEAISRGR 291
           S  EE++EAISRGR
Sbjct: 247 SFSEEMEEAISRGR 260

[Close]
BLAST of CmaCh20G000870 vs. TAIR10
Match: AT3G20890.1 (AT3G20890.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 364.0 bits (933), Expect = 8.6e-101
Identity = 186/287 (64.81%), Postives = 211/287 (73.52%), Query Frame = 1 

Query: 39  YADGGDGREMGAKRQRIVDQG--SSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGLP 98
           Y DG DGREMG KRQR++DQG    +YG  P SGFMYN   +     PPPFP VRLRGLP
Sbjct: 6   YGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYNPYGFVAPPPPPPFPAVRLRGLP 65

Query: 99  FDCMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGRRYVE 158
           FDC E DVVEFFHGLDVVDVLFVH+N K TGE FCVLGYPLQ+DFALQ+NRQNMGRRYVE
Sbjct: 66  FDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYVE 125

Query: 159 VFRSNRQEYYKAVANEVFD------ASGG---------------------------SPRR 218
           VFRS +QEYYKA+ANEV +      ASGG                           SPRR
Sbjct: 126 VFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGGSSPRR 185

Query: 219 TAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFILSEDSIHLTQNSEGRPS 278
              R++ +D+ K+  EHTG+LRLRGLP+SAGK+DILDFFK F LSED +H+T N EGRP+
Sbjct: 186 HVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPT 245

Query: 279 GEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR 291
           GEAFVEF N +DS+AAM KDR TLGSRYIELFPSS EEL+EA+SRGR
Sbjct: 246 GEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292

[Close]
BLAST of CmaCh20G000870 vs. TAIR10
Match: AT5G66010.1 (AT5G66010.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 218.4 bits (555), Expect = 5.8e-57
Identity = 119/255 (46.67%), Postives = 167/255 (65.49%), Query Frame = 1 

Query: 42  GGDGREMGAKRQRIVDQGSSYY--GTPPGSGFMYNTSPYACVSQPPPFPVVRLRGLPFDC 101
           G  G E+G+KRQR++ Q + Y   GT P S   +    YA       FPVVRLRGLPF+C
Sbjct: 10  GSGGYEVGSKRQRMM-QSNPYLAVGTGPTS---FPPFGYA-----GGFPVVRLRGLPFNC 69

Query: 102 METDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGRRYVEVFR 161
            + D+ EFF GL++VDVL V KNGKF+GE F V   P+Q++ ALQR+R NMGRRYVEVFR
Sbjct: 70  ADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFR 129

Query: 162 SNRQEYYKAVANE----VFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 221
            ++Q+YY AVA E     ++     P     R+K   E K+  E+T VL++RGLPYS  K
Sbjct: 130 CSKQDYYNAVAAEEGAYEYEVRASPPPTGPSRAKRFSE-KEKLEYTEVLKMRGLPYSVNK 189

Query: 222 DDILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELF 281
             I++FF G+ + +  + +    +G+ +GEAFVEF   ++++ AM+KD+M++GSRY+ELF
Sbjct: 190 PQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELF 249

Query: 282 PSSHEELDEAISRGR 291
           P++ EE   A +R R
Sbjct: 250 PTTREEARRAEARSR 254

[Close]
BLAST of CmaCh20G000870 vs. NCBI nr
Match: gi|449448717|ref|XP_004142112.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein F [Cucumis sativus])

HSP 1 Score: 494.6 bits (1272), Expect = 1.2e-136
Identity = 240/252 (95.24%), Postives = 246/252 (97.62%), Query Frame = 1 

Query: 39  YADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGLPFD 98
           YADGGDGREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYA V+QPPPFPVVRLRGLPFD
Sbjct: 9   YADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPFD 68

Query: 99  CMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGRRYVEVF 158
           CMETDVVEFFHGLD+VD+LFVHKNGKFTGEGFCVLGYPLQ+DFALQRNRQNMGRRYVE+F
Sbjct: 69  CMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIF 128

Query: 159 RSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDDI 218
           RSNRQEYYKAVANEVFDA GGSPRR+APRSKL DEVKDSAEHTGVLRLRGLPYSAGKDDI
Sbjct: 129 RSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDDI 188

Query: 219 LDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSS 278
           LDFFKGF LSEDSIHLT NSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSS
Sbjct: 189 LDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSS 248

Query: 279 HEELDEAISRGR 291
           HEELDEAISRGR
Sbjct: 249 HEELDEAISRGR 260

[Close]
BLAST of CmaCh20G000870 vs. NCBI nr
Match: gi|1009118465|ref|XP_015875875.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Ziziphus jujuba])

HSP 1 Score: 434.1 bits (1115), Expect = 1.9e-118
Identity = 205/252 (81.35%), Postives = 227/252 (90.08%), Query Frame = 1 

Query: 39  YADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGLPFD 98
           Y DGGDGREM AKRQR+V+QGSS+YG  PGS FMYN +PYA V QPPPFPVV+LRGLPFD
Sbjct: 7   YNDGGDGREMSAKRQRVVEQGSSFYGASPGSSFMYNPTPYAYVGQPPPFPVVKLRGLPFD 66

Query: 99  CMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGRRYVEVF 158
           C ETDV EFFHGLD+VDVLFVHKNGKFTGE FCVLGYPLQ+DFALQRNR NMGRRYVEVF
Sbjct: 67  CTETDVAEFFHGLDIVDVLFVHKNGKFTGEAFCVLGYPLQVDFALQRNRHNMGRRYVEVF 126

Query: 159 RSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDDI 218
           RS RQEYYKA+A EV DA GGSPRR+ PR+K   E K++AEHTGVLRLRGLP+SAGKDDI
Sbjct: 127 RSKRQEYYKAIAYEVSDARGGSPRRSIPRAKSYSEGKETAEHTGVLRLRGLPFSAGKDDI 186

Query: 219 LDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSS 278
           ++FFK F+LSEDS+H T NSEGRP+GEAFVEF+N +DSKAAM+KDRMTLGSRYIELFPSS
Sbjct: 187 IEFFKDFVLSEDSVHFTMNSEGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 246

Query: 279 HEELDEAISRGR 291
           HEELDEA+SRGR
Sbjct: 247 HEELDEALSRGR 258

[Close]
BLAST of CmaCh20G000870 vs. NCBI nr
Match: gi|590584028|ref|XP_007015061.1| (RNA-binding family protein [Theobroma cacao])

HSP 1 Score: 431.0 bits (1107), Expect = 1.6e-117
Identity = 204/254 (80.31%), Postives = 226/254 (88.98%), Query Frame = 1 

Query: 39  YADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSP--YACVSQPPPFPVVRLRGLP 98
           Y DG DGREMGAKRQRI+DQG S+YGT PGS FMYN  P  Y  VSQPPPFPVVRLRGLP
Sbjct: 7   YTDGADGREMGAKRQRIIDQGPSFYGTSPGSSFMYNAPPPPYTYVSQPPPFPVVRLRGLP 66

Query: 99  FDCMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGRRYVE 158
           FDC E DV EFFHGLD+VDVLFVHKN KFTGE FC+LGYPLQ+DFALQ+NRQNMGRRYVE
Sbjct: 67  FDCTEADVAEFFHGLDIVDVLFVHKNSKFTGEAFCILGYPLQVDFALQKNRQNMGRRYVE 126

Query: 159 VFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKD 218
           VFRS RQEYYKA+ANEV DA GGSPRR  PR+K +D+ KDSAEHTG+LRLRGLP+SAGKD
Sbjct: 127 VFRSKRQEYYKAIANEVADARGGSPRRNVPRAKSSDDAKDSAEHTGILRLRGLPFSAGKD 186

Query: 219 DILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFP 278
           DI++FFK F+LSED+IH+  NSEGRPSGEAFVEF+N +DSKAAM+KDRMTLGSRYIELFP
Sbjct: 187 DIIEFFKDFVLSEDAIHIIMNSEGRPSGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 246

Query: 279 SSHEELDEAISRGR 291
           SS EE+D+AISRGR
Sbjct: 247 SSPEEMDDAISRGR 260

[Close]
BLAST of CmaCh20G000870 vs. NCBI nr
Match: gi|567907621|ref|XP_006446124.1| (hypothetical protein CICLE_v10016322mg [Citrus clementina])

HSP 1 Score: 430.6 bits (1106), Expect = 2.1e-117
Identity = 204/253 (80.63%), Postives = 226/253 (89.33%), Query Frame = 1 

Query: 39  YADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSP-YACVSQPPPFPVVRLRGLPF 98
           +A+G DGREMGAKRQR++DQG S+YGTPP S FMYN  P Y  VSQPPPFPVVRLRGLPF
Sbjct: 7   FAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPF 66

Query: 99  DCMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGRRYVEV 158
           DC E DV EFFHGLD+VDVLFVHKN KFTGE FCVLGYPLQ+DFALQRNRQNMGRRYVEV
Sbjct: 67  DCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEV 126

Query: 159 FRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDD 218
           FRS RQEYYKA+ANEV D  GGSP R+ PR+K  DE KDSA HTG+LRLRGLP+SAGKDD
Sbjct: 127 FRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDD 186

Query: 219 ILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 278
           I+DFFK F+LSEDSIH+T NS+GRP+GEAFVEF+N +DSKAAM+KDRMTLGSRYIELFPS
Sbjct: 187 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246

Query: 279 SHEELDEAISRGR 291
           SHEE+DEA+SRGR
Sbjct: 247 SHEEMDEALSRGR 259

[Close]
BLAST of CmaCh20G000870 vs. NCBI nr
Match: gi|645241927|ref|XP_008227311.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein F [Prunus mume])

HSP 1 Score: 430.3 bits (1105), Expect = 2.8e-117
Identity = 203/252 (80.56%), Postives = 223/252 (88.49%), Query Frame = 1 

Query: 39  YADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGLPFD 98
           + DGGDGR+MGAKRQR+ D GSS+YGT PGS +MYN +PYA   QPPPFPVV+LRGLPFD
Sbjct: 7   FGDGGDGRDMGAKRQRLGDPGSSFYGTSPGSSYMYNPTPYAYAGQPPPFPVVKLRGLPFD 66

Query: 99  CMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGRRYVEVF 158
           C E DV EF HGLD+VDVLFVHKNGKFTGE FCVLGYPLQ+DFAL RNRQNMGRRYVEVF
Sbjct: 67  CTEADVAEFLHGLDIVDVLFVHKNGKFTGEAFCVLGYPLQVDFALSRNRQNMGRRYVEVF 126

Query: 159 RSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDDI 218
           RS RQEYYKA+ANEV DA GGSPRR  PR+K  DE KDSAEHTGVLRLRGLP+SAGKDDI
Sbjct: 127 RSKRQEYYKAIANEVSDARGGSPRRNVPRAKSYDEGKDSAEHTGVLRLRGLPFSAGKDDI 186

Query: 219 LDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSS 278
           +DFFK F+LSE SIH T NSEGRP+GE FVEF++ +DSKAAM+KDRMTLGSRYIELFPSS
Sbjct: 187 MDFFKDFVLSESSIHFTMNSEGRPTGEGFVEFASAEDSKAAMAKDRMTLGSRYIELFPSS 246

Query: 279 HEELDEAISRGR 291
           HEELDEA+SRGR
Sbjct: 247 HEELDEAVSRGR 258

The following BLAST results are available for this feature:
BLAST of CmaCh20G000870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HNRPF_HUMAN5.0e-2636.18Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3[more]
HNRPF_MACFA5.0e-2636.18Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 ... [more]
RBM12_MOUSE1.5e-2536.19RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE=1 SV=3[more]
HNRPF_BOVIN1.9e-2536.18Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3[more]
RBM12_PONAB4.2e-2534.82RNA-binding protein 12 OS=Pongo abelii GN=RBM12 PE=2 SV=1[more]
BLAST of CmaCh20G000870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L205_CUCSA8.3e-13795.24Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291930 PE=4 SV=1[more]
A0A061GSA0_THECC1.1e-11780.31RNA-binding family protein OS=Theobroma cacao GN=TCM_040707 PE=4 SV=1[more]
A0A067F1Q2_CITSI1.5e-11780.63Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025001mg PE=4 SV=1[more]
V4W0L4_9ROSI1.5e-11780.63Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016322mg PE=4 SV=1[more]
A0A0D2S2A8_GOSRA5.6e-11780.31Uncharacterized protein OS=Gossypium raimondii GN=B456_006G128500 PE=4 SV=1[more]
BLAST of CmaCh20G000870 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G20890.18.6e-10164.81 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G66010.15.8e-5746.67 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of CmaCh20G000870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449448717|ref|XP_004142112.1|1.2e-13695.24PREDICTED: heterogeneous nuclear ribonucleoprotein F [Cucumis sativus][more]
gi|1009118465|ref|XP_015875875.1|1.9e-11881.35PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Ziziphus jujuba... [more]
gi|590584028|ref|XP_007015061.1|1.6e-11780.31RNA-binding family protein [Theobroma cacao][more]
gi|567907621|ref|XP_006446124.1|2.1e-11780.63hypothetical protein CICLE_v10016322mg [Citrus clementina][more]
gi|645241927|ref|XP_008227311.1|2.8e-11780.56PREDICTED: heterogeneous nuclear ribonucleoprotein F [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G000870.1CmaCh20G000870.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 205..272
score: 7.
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 89..158
score: 0.16coord: 203..275
score: 7.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 202..290
score: 10
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 88..168
score: 3.5E-14coord: 189..290
score: 4.5
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 82..167
score: 3.22E-14coord: 196..286
score: 4.97
NoneNo IPR availablePANTHERPTHR13976HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATEDcoord: 39..290
score: 2.3E
NoneNo IPR availablePANTHERPTHR13976:SF40RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEINcoord: 39..290
score: 2.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh20G000870Cucsa.065590Cucumber (Gy14) v1cgycmaB0101
CmaCh20G000870Cla008549Watermelon (97103) v1cmawmB531
CmaCh20G000870Csa4G291930Cucumber (Chinese Long) v2cmacuB549
CmaCh20G000870MELO3C014592Melon (DHL92) v3.5.1cmameB521
CmaCh20G000870ClCG02G023210Watermelon (Charleston Gray)cmawcgB489
CmaCh20G000870CSPI04G13940Wild cucumber (PI 183967)cmacpiB554
CmaCh20G000870CmoCh02G012900Cucurbita moschata (Rifu)cmacmoB555
CmaCh20G000870CmoCh20G000910Cucurbita moschata (Rifu)cmacmoB550
CmaCh20G000870Lsi10G010650Bottle gourd (USVL1VR-Ls)cmalsiB500
CmaCh20G000870Cp4.1LG16g08930Cucurbita pepo (Zucchini)cmacpeB564
CmaCh20G000870Cp4.1LG05g04890Cucurbita pepo (Zucchini)cmacpeB586
CmaCh20G000870MELO3C014592.2Melon (DHL92) v3.6.1cmamedB598
CmaCh20G000870CsaV3_4G024280Cucumber (Chinese Long) v3cmacucB0660
CmaCh20G000870Cla97C02G049300Watermelon (97103) v2cmawmbB577
CmaCh20G000870Bhi10G000231Wax gourdcmawgoB0693
CmaCh20G000870CsGy4G013510Cucumber (Gy14) v2cgybcmaB522
CmaCh20G000870Carg02708Silver-seed gourdcarcmaB1267
CmaCh20G000870Carg06902Silver-seed gourdcarcmaB0732
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh20G000870CmaCh02G012520Cucurbita maxima (Rimu)cmacmaB470
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh20G000870Cucurbita pepo (Zucchini)cmacpeB566
CmaCh20G000870Cucurbita pepo (Zucchini)cmacpeB567
CmaCh20G000870Cucurbita pepo (Zucchini)cmacpeB576
CmaCh20G000870Bottle gourd (USVL1VR-Ls)cmalsiB521
CmaCh20G000870Bottle gourd (USVL1VR-Ls)cmalsiB527
CmaCh20G000870Cucumber (Gy14) v2cgybcmaB116
CmaCh20G000870Cucumber (Gy14) v2cgybcmaB958
CmaCh20G000870Melon (DHL92) v3.6.1cmamedB591
CmaCh20G000870Silver-seed gourdcarcmaB0232
CmaCh20G000870Silver-seed gourdcarcmaB0652
CmaCh20G000870Cucumber (Chinese Long) v3cmacucB0647
CmaCh20G000870Cucumber (Chinese Long) v3cmacucB0688
CmaCh20G000870Watermelon (97103) v2cmawmbB593
CmaCh20G000870Watermelon (97103) v2cmawmbB599
CmaCh20G000870Wax gourdcmawgoB0706
CmaCh20G000870Wax gourdcmawgoB0707
CmaCh20G000870Cucurbita maxima (Rimu)cmacmaB111
CmaCh20G000870Cucurbita maxima (Rimu)cmacmaB158
CmaCh20G000870Cucurbita maxima (Rimu)cmacmaB364
CmaCh20G000870Cucurbita maxima (Rimu)cmacmaB494
CmaCh20G000870Cucumber (Gy14) v1cgycmaB0398
CmaCh20G000870Cucurbita moschata (Rifu)cmacmoB538
CmaCh20G000870Cucurbita moschata (Rifu)cmacmoB541
CmaCh20G000870Wild cucumber (PI 183967)cmacpiB543
CmaCh20G000870Wild cucumber (PI 183967)cmacpiB581
CmaCh20G000870Cucumber (Chinese Long) v2cmacuB537
CmaCh20G000870Cucumber (Chinese Long) v2cmacuB577
CmaCh20G000870Melon (DHL92) v3.5.1cmameB514
CmaCh20G000870Watermelon (Charleston Gray)cmawcgB503
CmaCh20G000870Watermelon (97103) v1cmawmB516