Cp4.1LG05g04890 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g04890
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHeterogeneous nuclear ribonucleoprotein
LocationCp4.1LG05 : 2918273 .. 2921878 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCTGTCGGGAACGAAAAAGGAAGGGTACGGGTCCATTCAGGCGCAGTGAGGTCTCAGCTTCTCACGCTTATTTAATATTTACTTCGCAATTTGGATTCAGATTTCACAATTCAACTGATGTTGCGACGCCTGCCGCTTCGACATCAACAACTGGGCATCCCCCCCCTATCAGCGCCACCATGTTCTATCGAGGGTAAGTTTTCTCTTCCCCTGATCCCTATTCTTAACTTCTTCCTATTTCTACGATTCTTTTCCCCATAATTCTTGTATTTTCACGCCGATTTGGGGTTCCAATCGCTTCGTTTCTCTCTACTTTCTGTGTATTTCTAAATTGATGAGGATTCCAAGCTTCTTTTCACTAATTATTCTTACGTACCGTGTGTTTTCTTCTTCATTCACTCTGAGTGTTCCGTTCTTTCTTTTATTGGATTAGAATTGTTTATAGGCTTATTTTGTTAATTTCGAATCTCCGATTACGGGTATGATCGTGTATGCGTGGATTTTGTTCTTCTAGGTTCTTATCGCTTTGTAAATGCTTTGCACAACCGGATGCGTAGAGGCAATTTCATGTGATGTATGGATGAACTAGCAAAGCAAAATAAACCCGAAGTTTTAACTTGAAAATTTTGGATATTTTCAGTTTATTGTTTCAGTGACTCTAAGTGGTTGGATGATTAGTTGGCTAGTTTATATGGTTTCGAAGACTGGGTTGTTGAATTGTCATCAATTAGTTTAGGTATTGGGAATGCCTGAGCTTTAATTTTTATTGTCTTAACAATATATGAGACTTGTTTTACAATGGGAAATATGCGCTTGGTTTTTTCACCTGTGGGAAAGAGATTAGATAATGAGGAAAGGGCAAGAAGGCTAAAATAGAAATTCCACTATCAGTGTGAATGAAGAAGGAAGGAAGAATGAATTGAAATCCATAACAAGTGTGTACCCATCTAGAGGAGGCAGAAGAGCATATTCCCCTTGACTTCCTGTACATCCCTAAGGGTATTGACAAAATTTCGAAATCCTGCTAGAAACAGTCGAACCACAATTTTTCTTAGTTCTCGGATTTCTATTATCCATGGCTAGTTTAAATATAATGTCAATAGGAACTGTCTCTAAAATGTTCGCTAAGGATGAGCCACTTTAATTGGCTTTTTAAAATTGACTTCCACCTTGTGTCAATTTCTATTATCAATGGCTTGTGTCAATTTGTATCATTCCACAGCTTCCTGGTATTTTCAAAAGAGATTTGGGTATTGGCTATGTAATCTATCGTAATTTGGTCCTCATTTTAACGTGACATTGAGTCAAACGAACCAAATTCTCTCTATCACAAGGTCTTTTCTAGTAAATATGATGCTCTCCCCTTGATAAAACTTCCAGCACCCAAATGTTCAACCCTCCAGTGAATTTCAAGAGAGAATTTGGTCTTGGGAGAATTGCTGACCCCGAACCCTGACACTGACACCTTACTTGCGGATTACCCTCACACGTCTATACTACTGTGAGAAACTAATGCAGATAGAGAGCTAGCTGTCAGGATTAAAGACACAATGGCCTGGAACCTGGGTTTTTGAAGACATCTCAAGGATGAGGAAGTCCTAAACTTTTTAGAACTTTTCTAGGAATTTAGCGTATTTAGGCCATTCTGCATGGAAACCAAGAGAAATTTGGAGCTTGGACATATGTGGAAACATGTCCTGCAAGTTTCTTTTCACCACCTTGTTATCTCATGTCCAGCCATTCAAAAAACTATGGTAAATTGCATTTGGAAGAGAAAGATTACCAAAAAGATTTAACGCTTCTTATGGATACATATTGGAGAGTATTGAACACCTTTGAAAAGTTGCAAGCAAGATTGCAGTCCTCTTTTCTTTTTAATCTTCAAACTGATGGATAATGTGCACAGCCATCTTTTCCTTTGCTCGATTTTGCGCCTAACCACTGGAGCAACACTCTTGATTAAAAGTTTTTTTGATAATCCTGAACTGTGAAAGAGGATGAAATAATCTTTTCGTCAATTATAGCTGTTTGTGTTGATGATCAACTTTAATGTAGTCCTTTGCTGAAGCGTCTGCCATTTTCTGTATTTATTTAGTGTGTTTGGAAAATACTGAAAGTTTACCCACATTTGTTTTACGAGAAACTCAAACTAGCAGGTCTATATTCTTATAGCCAAGGAAATTGTCTGCTAGTTAATAGATGCGTGTAGGAGTATCTCTTCGTTGTCTGCATACCAATGAGTGGGAGAAGTGTGGATATTTTTCTTATATTTGATACATCGATTTTTTTTCTCTCTTGGATGGAATATTGATGAGGTTTCTGTTTTTGTTCGGATTGAAGTTCATTTGCTGATGGTGTTGACGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTGCCGGGTTTATGTATAATACAAGTCCTTATGCATATGTTGGTCAGCCACCACCGTTTCCCGTTGTCAGACTACGGGGTCTTCCCTTCGATTGCATGGAAACTGATGTTGCTGAGTTCTTTCATGGTCTGGACATAGTTGACATTATTTTCGTCCACAAGAATGGCAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGTTATCCTCTGCAGGTTGATTTTGCCCTTCAAAGGAATAGGCAAAACATGGGCAGGAGATATGTTGAGATTTTCAGGAGTAATCGACAGGAATACTACAAGGCGGTAGCAAATGAAGTTTTCGATGCCCGGGGTGGTTCGCCAAGAAGAACTGCACCCAGGTTGAAATTAAACGATGAGGTGAAAGACTTCACCGAACACACAGGTATATTACGTTTGAGAGGACTGCCATATTCAGCAGGCAAGGATGACATACTGGACTTCTTCAAAGGTTTTATCTTATCAGAAGACGTGATTCATCTAACACTGAATTCAGAAGGAAGGCCAAGTGGGGAAGCATTTGTCGAATTCGCAAACGAGCAAGACTCGAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGTTACATAGAGTTGTTCCCGTCATCCCAAGAAGAGCTAGACGAAGCTATCGCCAGAGGACGGTGACACCAGCTATTCTATTCTATTCACTGTGTTTTCTTCAATTACTACGTTGTTTTGGTTTGGTTTTGGAGTAATGAGGTTTATGGAGGAGTTAGAAGTGAATAGGAGCCAAGTTTGGTTGTGTTCTTATGGTGACCATACATTCTCTCTACTTTCCAGGACCATTGTTAGCCAGACGAGCAGGTCGCACGCATCGCTCGGTCTGCATAAATTTGTGAAAAGAATTTGGTTAGAAGGGTTCTCTATATGTATTAACCATTCCTCTGGGTAGACGCTGTAGTTGGTGGCTTATAATCTCCATCATATTTCTGTGTTTAAATTAAAGTTGAAGGGTCGAGTGAGAAAGATGGGCCACTGTATCTGTTAGCTAACATTTCATTTGTTTTTTCAAAACTGAAACCTAGACAGATTTTCCTCGGATAAAGTTTAAATTGAAAAGATGAAAATTTGGAAAAGGACATAGGAATTTGGATTAATAATATGTATTTAATTAATATTGTA

mRNA sequence

ATGGGCCTGTCGGGAACGAAAAAGGAAGGATTTCACAATTCAACTGATGTTGCGACGCCTGCCGCTTCGACATCAACAACTGGGCATCCCCCCCCTATCAGCGCCACCATGTTCTATCGAGGTTCATTTGCTGATGGTGTTGACGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTGCCGGGTTTATGTATAATACAAGTCCTTATGCATATGTTGGTCAGCCACCACCGTTTCCCGTTGTCAGACTACGGGGTCTTCCCTTCGATTGCATGGAAACTGATGTTGCTGAGTTCTTTCATGGTCTGGACATAGTTGACATTATTTTCGTCCACAAGAATGGCAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGTTATCCTCTGCAGGTTGATTTTGCCCTTCAAAGGAATAGGCAAAACATGGGCAGGAGATATGTTGAGATTTTCAGGAGTAATCGACAGGAATACTACAAGGCGGTAGCAAATGAAGTTTTCGATGCCCGGGGTGGTTCGCCAAGAAGAACTGCACCCAGGTTGAAATTAAACGATGAGGTGAAAGACTTCACCGAACACACAGGTATATTACGTTTGAGAGGACTGCCATATTCAGCAGGCAAGGATGACATACTGGACTTCTTCAAAGGTTTTATCTTATCAGAAGACGTGATTCATCTAACACTGAATTCAGAAGGAAGGCCAAGTGGGGAAGCATTTGTCGAATTCGCAAACGAGCAAGACTCGAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGTTACATAGAGTTGTTCCCGTCATCCCAAGAAGAGCTAGACGAAGCTATCGCCAGAGGACGGTGACACCAGCTATTCTATTCTATTCACTGTGTTTTCTTCAATTACTACGTTGTTTTGGTTTGGTTTTGGAGTAATGAGGTTTATGGAGGAGTTAGAAGTGAATAGGAGCCAAGTTTGGTTGTGTTCTTATGGTGACCATACATTCTCTCTACTTTCCAGGACCATTGTTAGCCAGACGAGCAGGTCGCACGCATCGCTCGGTCTGCATAAATTTGTGAAAAGAATTTGGTTAGAAGGGTTCTCTATATGTATTAACCATTCCTCTGGGTAGACGCTGTAGTTGGTGGCTTATAATCTCCATCATATTTCTGTGTTTAAATTAAAGTTGAAGGGTCGAGTGAGAAAGATGGGCCACTGTATCTGTTAGCTAACATTTCATTTGTTTTTTCAAAACTGAAACCTAGACAGATTTTCCTCGGATAAAGTTTAAATTGAAAAGATGAAAATTTGGAAAAGGACATAGGAATTTGGATTAATAATATGTATTTAATTAATATTGTA

Coding sequence (CDS)

ATGGGCCTGTCGGGAACGAAAAAGGAAGGATTTCACAATTCAACTGATGTTGCGACGCCTGCCGCTTCGACATCAACAACTGGGCATCCCCCCCCTATCAGCGCCACCATGTTCTATCGAGGTTCATTTGCTGATGGTGTTGACGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTGCCGGGTTTATGTATAATACAAGTCCTTATGCATATGTTGGTCAGCCACCACCGTTTCCCGTTGTCAGACTACGGGGTCTTCCCTTCGATTGCATGGAAACTGATGTTGCTGAGTTCTTTCATGGTCTGGACATAGTTGACATTATTTTCGTCCACAAGAATGGCAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGTTATCCTCTGCAGGTTGATTTTGCCCTTCAAAGGAATAGGCAAAACATGGGCAGGAGATATGTTGAGATTTTCAGGAGTAATCGACAGGAATACTACAAGGCGGTAGCAAATGAAGTTTTCGATGCCCGGGGTGGTTCGCCAAGAAGAACTGCACCCAGGTTGAAATTAAACGATGAGGTGAAAGACTTCACCGAACACACAGGTATATTACGTTTGAGAGGACTGCCATATTCAGCAGGCAAGGATGACATACTGGACTTCTTCAAAGGTTTTATCTTATCAGAAGACGTGATTCATCTAACACTGAATTCAGAAGGAAGGCCAAGTGGGGAAGCATTTGTCGAATTCGCAAACGAGCAAGACTCGAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGTTACATAGAGTTGTTCCCGTCATCCCAAGAAGAGCTAGACGAAGCTATCGCCAGAGGACGGTGA

Protein sequence

MGLSGTKKEGFHNSTDVATPAASTSTTGHPPPISATMFYRGSFADGVDGREMGAKRQRIVDQGSSYYGTSPGAGFMYNTSPYAYVGQPPPFPVVRLRGLPFDCMETDVAEFFHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRLKLNDEVKDFTEHTGILRLRGLPYSAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIARGR
Homology
[Close]
BLAST of Cp4.1LG05g04890 vs. Swiss-Prot
Match: HNRPF_HUMAN (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 123.6 bits (309), Expect = 3.5e-27
Identity = 74/199 (37.19%), Postives = 116/199 (58.29%), Query Frame = 1 

Query: 93  VVRLRGLPFDCMETDVAEFFHGLDIVD----IIFVH-KNGKFTGEGFCVLGYPLQVDFAL 152
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 153 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRLKLNDEVKDFTEHTGI 212
           +++R++MG RY+E+F+S+R E      + V    G +   +A     ND         G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEM-----DWVLKHSGPNSADSA-----ND---------GF 131

Query: 213 LRLRGLPYSAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKD 272
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+FA+++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 273 RMTLGSRYIELFPSSQEEL 287
           +  +G RYIE+F SSQEE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]
BLAST of Cp4.1LG05g04890 vs. Swiss-Prot
Match: HNRPF_MACFA (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 123.6 bits (309), Expect = 3.5e-27
Identity = 74/199 (37.19%), Postives = 116/199 (58.29%), Query Frame = 1 

Query: 93  VVRLRGLPFDCMETDVAEFFHGLDIVD----IIFVH-KNGKFTGEGFCVLGYPLQVDFAL 152
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 153 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRLKLNDEVKDFTEHTGI 212
           +++R++MG RY+E+F+S+R E      + V    G +   +A     ND         G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEM-----DWVLKHSGPNSADSA-----ND---------GF 131

Query: 213 LRLRGLPYSAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKD 272
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+FA+++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 273 RMTLGSRYIELFPSSQEEL 287
           +  +G RYIE+F SSQEE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]
BLAST of Cp4.1LG05g04890 vs. Swiss-Prot
Match: HNRPF_BOVIN (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 122.5 bits (306), Expect = 7.8e-27
Identity = 75/199 (37.69%), Postives = 114/199 (57.29%), Query Frame = 1 

Query: 93  VVRLRGLPFDCMETDVAEFFHGLDIVD-IIFVH----KNGKFTGEGFCVLGYPLQVDFAL 152
           VV+LRGLP+ C   DV  F     I D +  VH    + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 153 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRLKLNDEVKDFTEHTGI 212
           +++R++MG RY+E+F+S+R E      + V    G +   TA     ND         G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEM-----DWVLKHSGPNSADTA-----ND---------GF 131

Query: 213 LRLRGLPYSAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKD 272
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+FA+++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 273 RMTLGSRYIELFPSSQEEL 287
           +  +G RYIE+F SSQEE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]
BLAST of Cp4.1LG05g04890 vs. Swiss-Prot
Match: HNRPF_RAT (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 120.2 bits (300), Expect = 3.9e-26
Identity = 74/199 (37.19%), Postives = 114/199 (57.29%), Query Frame = 1 

Query: 93  VVRLRGLPFDCMETDVAEFFHGLDIVD-IIFVH----KNGKFTGEGFCVLGYPLQVDFAL 152
           VV+LRGLP+ C   DV  F     I D +  VH    + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 153 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRLKLNDEVKDFTEHTGI 212
           +++R++MG RY+E+F+S+R E      + V    G +   +A     ND         G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEM-----DWVLKHSGPNSADSA-----ND---------GF 131

Query: 213 LRLRGLPYSAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKD 272
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+FA+++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 273 RMTLGSRYIELFPSSQEEL 287
           +  +G RYIE+F SSQEE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]
BLAST of Cp4.1LG05g04890 vs. Swiss-Prot
Match: HNRPF_MOUSE (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 120.2 bits (300), Expect = 3.9e-26
Identity = 74/199 (37.19%), Postives = 114/199 (57.29%), Query Frame = 1 

Query: 93  VVRLRGLPFDCMETDVAEFFHGLDIVD-IIFVH----KNGKFTGEGFCVLGYPLQVDFAL 152
           VV+LRGLP+ C   DV  F     I D +  VH    + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 153 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRLKLNDEVKDFTEHTGI 212
           +++R++MG RY+E+F+S+R E      + V    G +   +A     ND         G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEM-----DWVLKHSGPNSADSA-----ND---------GF 131

Query: 213 LRLRGLPYSAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKD 272
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+FA+++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 273 RMTLGSRYIELFPSSQEEL 287
           +  +G RYIE+F SSQEE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]
BLAST of Cp4.1LG05g04890 vs. TrEMBL
Match: A0A0A0L205_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291930 PE=4 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 5.3e-139
Identity = 242/258 (93.80%), Postives = 249/258 (96.51%), Query Frame = 1 

Query: 37  MFYRGSFADGVDGREMGAKRQRIVDQGSSYYGTSPGAGFMYNTSPYAYVGQPPPFPVVRL 96
           MFYRGS+ADG DGREMGAKRQRIVDQGSSYYGTSPG+GFMYNTSPYAYV QPPPFPVVRL
Sbjct: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRL 62

Query: 97  RGLPFDCMETDVAEFFHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 156
           RGLPFDCMETDV EFFHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122

Query: 157 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRLKLNDEVKDFTEHTGILRLRGLPYS 216
           RYVEIFRSNRQEYYKAVANEVFDARGGSPRR+APR KLNDEVKD  EHTG+LRLRGLPYS
Sbjct: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYS 182

Query: 217 AGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYI 276
           AGKDDILDFFKGF LSED IHLTLNSEGRPSGEAFVEF+NEQDSKAAMSKDRMTLGSRYI
Sbjct: 183 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 242

Query: 277 ELFPSSQEELDEAIARGR 295
           ELFPSS EELDEAI+RGR
Sbjct: 243 ELFPSSHEELDEAISRGR 260

[Close]
BLAST of Cp4.1LG05g04890 vs. TrEMBL
Match: F6GU40_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02220 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 1.1e-123
Identity = 208/258 (80.62%), Postives = 234/258 (90.70%), Query Frame = 1 

Query: 37  MFYRGSFADGVDGREMGAKRQRIVDQGSSYYGTSPGAGFMYNTSPYAYVGQPPPFPVVRL 96
           MFYRG +ADG+DGR+MG KRQRI DQGSS+YG SPG+ FMYN SPY+Y+GQPPPFPVVRL
Sbjct: 1   MFYRGKYADGLDGRDMGPKRQRITDQGSSFYGGSPGSNFMYNASPYSYIGQPPPFPVVRL 60

Query: 97  RGLPFDCMETDVAEFFHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 156
           RGLPFDC E DVAEFFH LDIVD++FVHKNG+FTGE FCVLGYPLQV+FALQRNRQNMGR
Sbjct: 61  RGLPFDCSEADVAEFFHSLDIVDVLFVHKNGRFTGEAFCVLGYPLQVEFALQRNRQNMGR 120

Query: 157 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRLKLNDEVKDFTEHTGILRLRGLPYS 216
           RYVE+FRS RQEYYKA+ANEV D RGGSPRRTAP+ K NDE K+  EHTG+LRLRGLP+S
Sbjct: 121 RYVEVFRSKRQEYYKAIANEVSDTRGGSPRRTAPKAKSNDEGKESAEHTGVLRLRGLPFS 180

Query: 217 AGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYI 276
           A K+DI+DFFK F+LSED IH+T+NSEGRP+GEAFVEF N +DSKAAM+KDRMTLGSRYI
Sbjct: 181 ASKEDIMDFFKDFVLSEDSIHMTVNSEGRPTGEAFVEFTNAEDSKAAMAKDRMTLGSRYI 240

Query: 277 ELFPSSQEELDEAIARGR 295
           ELFPSS EELDEA+ARGR
Sbjct: 241 ELFPSSLEELDEAVARGR 258

[Close]
BLAST of Cp4.1LG05g04890 vs. TrEMBL
Match: A0A061GSA0_THECC (RNA-binding family protein OS=Theobroma cacao GN=TCM_040707 PE=4 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 2.0e-122
Identity = 208/260 (80.00%), Postives = 231/260 (88.85%), Query Frame = 1 

Query: 37  MFYRGSFADGVDGREMGAKRQRIVDQGSSYYGTSPGAGFMYNTSP--YAYVGQPPPFPVV 96
           MFYRG + DG DGREMGAKRQRI+DQG S+YGTSPG+ FMYN  P  Y YV QPPPFPVV
Sbjct: 1   MFYRGKYTDGADGREMGAKRQRIIDQGPSFYGTSPGSSFMYNAPPPPYTYVSQPPPFPVV 60

Query: 97  RLRGLPFDCMETDVAEFFHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 156
           RLRGLPFDC E DVAEFFHGLDIVD++FVHKN KFTGE FC+LGYPLQVDFALQ+NRQNM
Sbjct: 61  RLRGLPFDCTEADVAEFFHGLDIVDVLFVHKNSKFTGEAFCILGYPLQVDFALQKNRQNM 120

Query: 157 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRLKLNDEVKDFTEHTGILRLRGLP 216
           GRRYVE+FRS RQEYYKA+ANEV DARGGSPRR  PR K +D+ KD  EHTGILRLRGLP
Sbjct: 121 GRRYVEVFRSKRQEYYKAIANEVADARGGSPRRNVPRAKSSDDAKDSAEHTGILRLRGLP 180

Query: 217 YSAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSR 276
           +SAGKDDI++FFK F+LSED IH+ +NSEGRPSGEAFVEFAN +DSKAAM+KDRMTLGSR
Sbjct: 181 FSAGKDDIIEFFKDFVLSEDAIHIIMNSEGRPSGEAFVEFANAEDSKAAMAKDRMTLGSR 240

Query: 277 YIELFPSSQEELDEAIARGR 295
           YIELFPSS EE+D+AI+RGR
Sbjct: 241 YIELFPSSPEEMDDAISRGR 260

[Close]
BLAST of Cp4.1LG05g04890 vs. TrEMBL
Match: A0A0D2S2A8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G128500 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 1.0e-121
Identity = 208/260 (80.00%), Postives = 230/260 (88.46%), Query Frame = 1 

Query: 37  MFYRGSFADGVDGREMGAKRQRIVDQGSSYYGTSPGAGFMYNTSP--YAYVGQPPPFPVV 96
           MFYRG + DG DGREMGAKRQRI+DQG S+YG SPG+ FMY   P  Y+YV QPPPFPVV
Sbjct: 1   MFYRGKYTDGADGREMGAKRQRIIDQGPSFYGNSPGSSFMYTAPPPPYSYVSQPPPFPVV 60

Query: 97  RLRGLPFDCMETDVAEFFHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 156
           RLRGLPFDC ETDVAEFFHGLDIVD++FVHKN KFTGE FCVLGYPLQVDFALQ+NRQNM
Sbjct: 61  RLRGLPFDCTETDVAEFFHGLDIVDVLFVHKNSKFTGEAFCVLGYPLQVDFALQKNRQNM 120

Query: 157 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRLKLNDEVKDFTEHTGILRLRGLP 216
           GRRYVE+FRS RQEYYKA+ANEV DARGGSPRR APR K +DE K+  EHTGILRLRGLP
Sbjct: 121 GRRYVEVFRSKRQEYYKAIANEVADARGGSPRRNAPRAKSSDEAKESAEHTGILRLRGLP 180

Query: 217 YSAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSR 276
           +SAGKDDI++FFK F+LSED +H+ LNSEGRPSGEAFVEF N +DSKAAMSKDRMTLGSR
Sbjct: 181 FSAGKDDIMEFFKDFVLSEDAVHIVLNSEGRPSGEAFVEFTNAEDSKAAMSKDRMTLGSR 240

Query: 277 YIELFPSSQEELDEAIARGR 295
           YIELFPS  EE++EAI+RGR
Sbjct: 241 YIELFPSFSEEMEEAISRGR 260

[Close]
BLAST of Cp4.1LG05g04890 vs. TrEMBL
Match: A0A0B0N484_GOSAR (Heterogeneous nuclear ribonucleoprotein F OS=Gossypium arboreum GN=F383_34331 PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 2.9e-121
Identity = 207/260 (79.62%), Postives = 230/260 (88.46%), Query Frame = 1 

Query: 37  MFYRGSFADGVDGREMGAKRQRIVDQGSSYYGTSPGAGFMYNTSP--YAYVGQPPPFPVV 96
           MFYRG + DG DGREMGAKRQRI+DQG S+YG SPG+ FMY   P  Y+YV QPPPFPVV
Sbjct: 1   MFYRGKYTDGADGREMGAKRQRIIDQGPSFYGNSPGSSFMYTAPPPPYSYVSQPPPFPVV 60

Query: 97  RLRGLPFDCMETDVAEFFHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 156
           RLRGLPFDC ETDVAEFFHGLDIVD++FVHKN KFTGE FCVLGYPLQVDFALQ+NRQNM
Sbjct: 61  RLRGLPFDCTETDVAEFFHGLDIVDVLFVHKNSKFTGEAFCVLGYPLQVDFALQKNRQNM 120

Query: 157 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRLKLNDEVKDFTEHTGILRLRGLP 216
           GRRYVE+FRS RQEYYKA+ANEV DARG SPRR APR+K +DE K+  EHTGILRLRGLP
Sbjct: 121 GRRYVEVFRSKRQEYYKAIANEVADARGSSPRRNAPRVKSSDEAKESAEHTGILRLRGLP 180

Query: 217 YSAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSR 276
           +SAGKDDI++FFK F+LSED +H+ LNSEGRPSGEAFVEF N +DSKAAMSKDRMTLGSR
Sbjct: 181 FSAGKDDIMEFFKDFVLSEDAVHIVLNSEGRPSGEAFVEFTNAEDSKAAMSKDRMTLGSR 240

Query: 277 YIELFPSSQEELDEAIARGR 295
           YIELFPS  EE++EAI+RGR
Sbjct: 241 YIELFPSFSEEMEEAISRGR 260

[Close]
BLAST of Cp4.1LG05g04890 vs. TAIR10
Match: AT3G20890.1 (AT3G20890.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 369.4 bits (947), Expect = 2.1e-102
Identity = 186/295 (63.05%), Postives = 217/295 (73.56%), Query Frame = 1 

Query: 37  MFYRGSFADGVDGREMGAKRQRIVDQG--SSYYGTSPGAGFMYNTSPYAYVGQP--PPFP 96
           MFYRG + DG DGREMG KRQR++DQG    +YG  P +GFMYN  PY +V  P  PPFP
Sbjct: 1   MFYRG-YGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYN--PYGFVAPPPPPPFP 60

Query: 97  VVRLRGLPFDCMETDVAEFFHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQ 156
            VRLRGLPFDC E DV EFFHGLD+VD++FVH+N K TGE FCVLGYPLQVDFALQ+NRQ
Sbjct: 61  AVRLRGLPFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQ 120

Query: 157 NMGRRYVEIFRSNRQEYYKAVANEVFDAR------------------------------- 216
           NMGRRYVE+FRS +QEYYKA+ANEV ++R                               
Sbjct: 121 NMGRRYVEVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRI 180

Query: 217 --GGSPRRTAPRLKLNDEVKDFTEHTGILRLRGLPYSAGKDDILDFFKGFILSEDVIHLT 276
             G SPRR   R + +D+ K+  EHTGILRLRGLP+SAGK+DILDFFK F LSED +H+T
Sbjct: 181 SGGSSPRRHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVT 240

Query: 277 LNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIARGR 295
           +N EGRP+GEAFVEF N +DS+AAM KDR TLGSRYIELFPSS EEL+EA++RGR
Sbjct: 241 VNGEGRPTGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292

[Close]
BLAST of Cp4.1LG05g04890 vs. TAIR10
Match: AT5G66010.1 (AT5G66010.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 227.6 bits (579), Expect = 9.7e-60
Identity = 117/253 (46.25%), Postives = 167/253 (66.01%), Query Frame = 1 

Query: 46  GVDGREMGAKRQRIVDQGSSYYGTSPGAGFMYNTSPYAYVGQPPPFPVVRLRGLPFDCME 105
           G  G E+G+KRQR++ Q + Y     G     +  P+ Y G    FPVVRLRGLPF+C +
Sbjct: 10  GSGGYEVGSKRQRMM-QSNPYLAVGTGPT---SFPPFGYAGG---FPVVRLRGLPFNCAD 69

Query: 106 TDVAEFFHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSN 165
            D+ EFF GL+IVD++ V KNGKF+GE F V   P+QV+ ALQR+R NMGRRYVE+FR +
Sbjct: 70  IDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFRCS 129

Query: 166 RQEYYKAVANE----VFDARGGSPRRTAPRLKLNDEVKDFTEHTGILRLRGLPYSAGKDD 225
           +Q+YY AVA E     ++ R  SP  T P        K+  E+T +L++RGLPYS  K  
Sbjct: 130 KQDYYNAVAAEEGAYEYEVR-ASPPPTGPSRAKRFSEKEKLEYTEVLKMRGLPYSVNKPQ 189

Query: 226 ILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPS 285
           I++FF G+ + +  + +    +G+ +GEAFVEF   ++++ AM+KD+M++GSRY+ELFP+
Sbjct: 190 IIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELFPT 249

Query: 286 SQEELDEAIARGR 295
           ++EE   A AR R
Sbjct: 250 TREEARRAEARSR 254

[Close]
BLAST of Cp4.1LG05g04890 vs. NCBI nr
Match: gi|449448717|ref|XP_004142112.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein F [Cucumis sativus])

HSP 1 Score: 501.9 bits (1291), Expect = 7.6e-139
Identity = 242/258 (93.80%), Postives = 249/258 (96.51%), Query Frame = 1 

Query: 37  MFYRGSFADGVDGREMGAKRQRIVDQGSSYYGTSPGAGFMYNTSPYAYVGQPPPFPVVRL 96
           MFYRGS+ADG DGREMGAKRQRIVDQGSSYYGTSPG+GFMYNTSPYAYV QPPPFPVVRL
Sbjct: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRL 62

Query: 97  RGLPFDCMETDVAEFFHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 156
           RGLPFDCMETDV EFFHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122

Query: 157 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRLKLNDEVKDFTEHTGILRLRGLPYS 216
           RYVEIFRSNRQEYYKAVANEVFDARGGSPRR+APR KLNDEVKD  EHTG+LRLRGLPYS
Sbjct: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYS 182

Query: 217 AGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYI 276
           AGKDDILDFFKGF LSED IHLTLNSEGRPSGEAFVEF+NEQDSKAAMSKDRMTLGSRYI
Sbjct: 183 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 242

Query: 277 ELFPSSQEELDEAIARGR 295
           ELFPSS EELDEAI+RGR
Sbjct: 243 ELFPSSHEELDEAISRGR 260

[Close]
BLAST of Cp4.1LG05g04890 vs. NCBI nr
Match: gi|225435437|ref|XP_002285426.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein F [Vitis vinifera])

HSP 1 Score: 451.1 bits (1159), Expect = 1.5e-123
Identity = 208/258 (80.62%), Postives = 234/258 (90.70%), Query Frame = 1 

Query: 37  MFYRGSFADGVDGREMGAKRQRIVDQGSSYYGTSPGAGFMYNTSPYAYVGQPPPFPVVRL 96
           MFYRG +ADG+DGR+MG KRQRI DQGSS+YG SPG+ FMYN SPY+Y+GQPPPFPVVRL
Sbjct: 1   MFYRGKYADGLDGRDMGPKRQRITDQGSSFYGGSPGSNFMYNASPYSYIGQPPPFPVVRL 60

Query: 97  RGLPFDCMETDVAEFFHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 156
           RGLPFDC E DVAEFFH LDIVD++FVHKNG+FTGE FCVLGYPLQV+FALQRNRQNMGR
Sbjct: 61  RGLPFDCSEADVAEFFHSLDIVDVLFVHKNGRFTGEAFCVLGYPLQVEFALQRNRQNMGR 120

Query: 157 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRLKLNDEVKDFTEHTGILRLRGLPYS 216
           RYVE+FRS RQEYYKA+ANEV D RGGSPRRTAP+ K NDE K+  EHTG+LRLRGLP+S
Sbjct: 121 RYVEVFRSKRQEYYKAIANEVSDTRGGSPRRTAPKAKSNDEGKESAEHTGVLRLRGLPFS 180

Query: 217 AGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYI 276
           A K+DI+DFFK F+LSED IH+T+NSEGRP+GEAFVEF N +DSKAAM+KDRMTLGSRYI
Sbjct: 181 ASKEDIMDFFKDFVLSEDSIHMTVNSEGRPTGEAFVEFTNAEDSKAAMAKDRMTLGSRYI 240

Query: 277 ELFPSSQEELDEAIARGR 295
           ELFPSS EELDEA+ARGR
Sbjct: 241 ELFPSSLEELDEAVARGR 258

[Close]
BLAST of Cp4.1LG05g04890 vs. NCBI nr
Match: gi|590584028|ref|XP_007015061.1| (RNA-binding family protein [Theobroma cacao])

HSP 1 Score: 446.8 bits (1148), Expect = 2.9e-122
Identity = 208/260 (80.00%), Postives = 231/260 (88.85%), Query Frame = 1 

Query: 37  MFYRGSFADGVDGREMGAKRQRIVDQGSSYYGTSPGAGFMYNTSP--YAYVGQPPPFPVV 96
           MFYRG + DG DGREMGAKRQRI+DQG S+YGTSPG+ FMYN  P  Y YV QPPPFPVV
Sbjct: 1   MFYRGKYTDGADGREMGAKRQRIIDQGPSFYGTSPGSSFMYNAPPPPYTYVSQPPPFPVV 60

Query: 97  RLRGLPFDCMETDVAEFFHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 156
           RLRGLPFDC E DVAEFFHGLDIVD++FVHKN KFTGE FC+LGYPLQVDFALQ+NRQNM
Sbjct: 61  RLRGLPFDCTEADVAEFFHGLDIVDVLFVHKNSKFTGEAFCILGYPLQVDFALQKNRQNM 120

Query: 157 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRLKLNDEVKDFTEHTGILRLRGLP 216
           GRRYVE+FRS RQEYYKA+ANEV DARGGSPRR  PR K +D+ KD  EHTGILRLRGLP
Sbjct: 121 GRRYVEVFRSKRQEYYKAIANEVADARGGSPRRNVPRAKSSDDAKDSAEHTGILRLRGLP 180

Query: 217 YSAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSR 276
           +SAGKDDI++FFK F+LSED IH+ +NSEGRPSGEAFVEFAN +DSKAAM+KDRMTLGSR
Sbjct: 181 FSAGKDDIIEFFKDFVLSEDAIHIIMNSEGRPSGEAFVEFANAEDSKAAMAKDRMTLGSR 240

Query: 277 YIELFPSSQEELDEAIARGR 295
           YIELFPSS EE+D+AI+RGR
Sbjct: 241 YIELFPSSPEEMDDAISRGR 260

[Close]
BLAST of Cp4.1LG05g04890 vs. NCBI nr
Match: gi|1009118465|ref|XP_015875875.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Ziziphus jujuba])

HSP 1 Score: 445.3 bits (1144), Expect = 8.4e-122
Identity = 207/258 (80.23%), Postives = 232/258 (89.92%), Query Frame = 1 

Query: 37  MFYRGSFADGVDGREMGAKRQRIVDQGSSYYGTSPGAGFMYNTSPYAYVGQPPPFPVVRL 96
           MFYRG + DG DGREM AKRQR+V+QGSS+YG SPG+ FMYN +PYAYVGQPPPFPVV+L
Sbjct: 1   MFYRGKYNDGGDGREMSAKRQRVVEQGSSFYGASPGSSFMYNPTPYAYVGQPPPFPVVKL 60

Query: 97  RGLPFDCMETDVAEFFHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 156
           RGLPFDC ETDVAEFFHGLDIVD++FVHKNGKFTGE FCVLGYPLQVDFALQRNR NMGR
Sbjct: 61  RGLPFDCTETDVAEFFHGLDIVDVLFVHKNGKFTGEAFCVLGYPLQVDFALQRNRHNMGR 120

Query: 157 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRLKLNDEVKDFTEHTGILRLRGLPYS 216
           RYVE+FRS RQEYYKA+A EV DARGGSPRR+ PR K   E K+  EHTG+LRLRGLP+S
Sbjct: 121 RYVEVFRSKRQEYYKAIAYEVSDARGGSPRRSIPRAKSYSEGKETAEHTGVLRLRGLPFS 180

Query: 217 AGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYI 276
           AGKDDI++FFK F+LSED +H T+NSEGRP+GEAFVEFAN +DSKAAM+KDRMTLGSRYI
Sbjct: 181 AGKDDIIEFFKDFVLSEDSVHFTMNSEGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYI 240

Query: 277 ELFPSSQEELDEAIARGR 295
           ELFPSS EELDEA++RGR
Sbjct: 241 ELFPSSHEELDEALSRGR 258

[Close]
BLAST of Cp4.1LG05g04890 vs. NCBI nr
Match: gi|823173254|ref|XP_012485390.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform X1 [Gossypium raimondii])

HSP 1 Score: 444.5 bits (1142), Expect = 1.4e-121
Identity = 208/260 (80.00%), Postives = 230/260 (88.46%), Query Frame = 1 

Query: 37  MFYRGSFADGVDGREMGAKRQRIVDQGSSYYGTSPGAGFMYNTSP--YAYVGQPPPFPVV 96
           MFYRG + DG DGREMGAKRQRI+DQG S+YG SPG+ FMY   P  Y+YV QPPPFPVV
Sbjct: 1   MFYRGKYTDGADGREMGAKRQRIIDQGPSFYGNSPGSSFMYTAPPPPYSYVSQPPPFPVV 60

Query: 97  RLRGLPFDCMETDVAEFFHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 156
           RLRGLPFDC ETDVAEFFHGLDIVD++FVHKN KFTGE FCVLGYPLQVDFALQ+NRQNM
Sbjct: 61  RLRGLPFDCTETDVAEFFHGLDIVDVLFVHKNSKFTGEAFCVLGYPLQVDFALQKNRQNM 120

Query: 157 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRLKLNDEVKDFTEHTGILRLRGLP 216
           GRRYVE+FRS RQEYYKA+ANEV DARGGSPRR APR K +DE K+  EHTGILRLRGLP
Sbjct: 121 GRRYVEVFRSKRQEYYKAIANEVADARGGSPRRNAPRAKSSDEAKESAEHTGILRLRGLP 180

Query: 217 YSAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSR 276
           +SAGKDDI++FFK F+LSED +H+ LNSEGRPSGEAFVEF N +DSKAAMSKDRMTLGSR
Sbjct: 181 FSAGKDDIMEFFKDFVLSEDAVHIVLNSEGRPSGEAFVEFTNAEDSKAAMSKDRMTLGSR 240

Query: 277 YIELFPSSQEELDEAIARGR 295
           YIELFPS  EE++EAI+RGR
Sbjct: 241 YIELFPSFSEEMEEAISRGR 260

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g04890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HNRPF_HUMAN3.5e-2737.19Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3[more]
HNRPF_MACFA3.5e-2737.19Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 ... [more]
HNRPF_BOVIN7.8e-2737.69Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3[more]
HNRPF_RAT3.9e-2637.19Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus GN=Hnrnpf PE=1 SV... [more]
HNRPF_MOUSE3.9e-2637.19Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf PE=1 SV=3[more]
BLAST of Cp4.1LG05g04890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L205_CUCSA5.3e-13993.80Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291930 PE=4 SV=1[more]
F6GU40_VITVI1.1e-12380.62Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02220 PE=4 SV=... [more]
A0A061GSA0_THECC2.0e-12280.00RNA-binding family protein OS=Theobroma cacao GN=TCM_040707 PE=4 SV=1[more]
A0A0D2S2A8_GOSRA1.0e-12180.00Uncharacterized protein OS=Gossypium raimondii GN=B456_006G128500 PE=4 SV=1[more]
A0A0B0N484_GOSAR2.9e-12179.62Heterogeneous nuclear ribonucleoprotein F OS=Gossypium arboreum GN=F383_34331 PE... [more]
BLAST of Cp4.1LG05g04890 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G20890.12.1e-10263.05 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G66010.19.7e-6046.25 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Cp4.1LG05g04890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449448717|ref|XP_004142112.1|7.6e-13993.80PREDICTED: heterogeneous nuclear ribonucleoprotein F [Cucumis sativus][more]
gi|225435437|ref|XP_002285426.1|1.5e-12380.62PREDICTED: heterogeneous nuclear ribonucleoprotein F [Vitis vinifera][more]
gi|590584028|ref|XP_007015061.1|2.9e-12280.00RNA-binding family protein [Theobroma cacao][more]
gi|1009118465|ref|XP_015875875.1|8.4e-12280.23PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Ziziphus jujuba... [more]
gi|823173254|ref|XP_012485390.1|1.4e-12180.00PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform X1 [Gossypium raimo... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g04890.1Cp4.1LG05g04890.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 209..276
score: 5.
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 207..279
score: 2.2E-8coord: 93..162
score: 0
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 206..294
score: 10
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 198..294
score: 4.0E-22coord: 93..172
score: 4.6
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 202..288
score: 2.82E-18coord: 84..171
score: 5.91
NoneNo IPR availablePANTHERPTHR13976HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATEDcoord: 33..294
score: 7.3E
NoneNo IPR availablePANTHERPTHR13976:SF40RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEINcoord: 33..294
score: 7.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g04890Cucsa.065590Cucumber (Gy14) v1cgycpeB0102
Cp4.1LG05g04890CmaCh20G000870Cucurbita maxima (Rimu)cmacpeB586
Cp4.1LG05g04890CmaCh02G012520Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g04890CmoCh02G012900Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g04890CmoCh20G000910Cucurbita moschata (Rifu)cmocpeB535
Cp4.1LG05g04890Cla008549Watermelon (97103) v1cpewmB723
Cp4.1LG05g04890Csa4G291930Cucumber (Chinese Long) v2cpecuB729
Cp4.1LG05g04890MELO3C014592Melon (DHL92) v3.5.1cpemeB696
Cp4.1LG05g04890ClCG02G023210Watermelon (Charleston Gray)cpewcgB644
Cp4.1LG05g04890CSPI04G13940Wild cucumber (PI 183967)cpecpiB730
Cp4.1LG05g04890Lsi10G010650Bottle gourd (USVL1VR-Ls)cpelsiB598
Cp4.1LG05g04890MELO3C014592.2Melon (DHL92) v3.6.1cpemedB829
Cp4.1LG05g04890CsaV3_4G024280Cucumber (Chinese Long) v3cpecucB0908
Cp4.1LG05g04890Bhi10G000231Wax gourdcpewgoB0944
Cp4.1LG05g04890CsGy4G013510Cucumber (Gy14) v2cgybcpeB561
Cp4.1LG05g04890Carg02708Silver-seed gourdcarcpeB1283
Cp4.1LG05g04890Carg06902Silver-seed gourdcarcpeB0741
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG05g04890Cp4.1LG16g08930Cucurbita pepo (Zucchini)cpecpeB310
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g04890Cucurbita pepo (Zucchini)cpecpeB190
Cp4.1LG05g04890Cucurbita pepo (Zucchini)cpecpeB341
Cp4.1LG05g04890Cucurbita pepo (Zucchini)cpecpeB369
Cp4.1LG05g04890Cucurbita pepo (Zucchini)cpecpeB493
Cp4.1LG05g04890Cucumber (Gy14) v1cgycpeB0386
Cp4.1LG05g04890Cucurbita maxima (Rimu)cmacpeB098
Cp4.1LG05g04890Cucurbita maxima (Rimu)cmacpeB158
Cp4.1LG05g04890Cucurbita moschata (Rifu)cmocpeB074
Cp4.1LG05g04890Cucurbita moschata (Rifu)cmocpeB134
Cp4.1LG05g04890Wild cucumber (PI 183967)cpecpiB705
Cp4.1LG05g04890Cucumber (Chinese Long) v2cpecuB703
Cp4.1LG05g04890Cucumber (Chinese Long) v2cpecuB768
Cp4.1LG05g04890Bottle gourd (USVL1VR-Ls)cpelsiB629
Cp4.1LG05g04890Watermelon (Charleston Gray)cpewcgB670
Cp4.1LG05g04890Cucumber (Gy14) v2cgybcpeB137
Cp4.1LG05g04890Cucumber (Gy14) v2cgybcpeB975
Cp4.1LG05g04890Melon (DHL92) v3.6.1cpemedB813
Cp4.1LG05g04890Silver-seed gourdcarcpeB0249
Cp4.1LG05g04890Silver-seed gourdcarcpeB0635
Cp4.1LG05g04890Silver-seed gourdcarcpeB0658
Cp4.1LG05g04890Cucumber (Chinese Long) v3cpecucB0877
Cp4.1LG05g04890Cucumber (Chinese Long) v3cpecucB0948
Cp4.1LG05g04890Wax gourdcpewgoB0970