Cucsa.065590.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGTTAGGTATTTGTTGAGCTTCTTCCTCAAAATTCATGGGCCAGCCCGGAACGAAATCGGAAGGGTAGGGATCCATTGAGGCTTAACCGGAGGTCTCTTTCAGTTCCTTTCCTTCCTTCCTTCACCGTATTTGGATTTTGGAATTTCGATTCAGATTTCACAATCCAACTCAAGCTGCGACCCCTTCAACAACAATAACCAACTGGGTTATCCCCTATCAGCATGAACATGTTCTACCGAGGGTAACTTTCCCCGATCTCTATTCTCATCTTTTTCTTCTTGCTCTGTTTCGTTCCCTGTTAATTCTCACAATTTTACGTCGGTTTTGGGCTCTGGGTTCTCTTTTTTtGCTCTATATTTCATGTAATATATTGACTAATTGGGAATTCTTAGTTGTTATTATTTACTGATTATTATTGCGAACAATTATCGGTTTCCTCATCTTTCACTTCAAGAATTTTCTGCTTTCTTTTCTCGGATTGGGATTTTTTGTGGGTGTGATCGTGTGGGTGAATGTTGTTCTGGTGGAGTTTGTTTTTTTTTtGGGTTTTTATATCTTTCTGCAAGCTCTGTACAATAGGATGGGGAGAAACAATTTAAATATGGTGTATGATTCAACTAGGAAATTAGAATAAGACCGAGGTTTTAACTTGAAAATTTAGTGTTTTTtGTTTGTTTTTGTGAGTCCTGTAGGATGATTGGTGGGCATGTTTATATGATTTAGAAAATTGATTTATTGGATTGATTGTCATCAATTAACTACTGATGTTGGTAACTCTGGGGTTTTAATGTTGACTGTATTTATAGTGCACGATAATGTTTTAAATGGGAAGAAGACGCTTGATTCCCTTTGCGAGTCTGCGATAGATTGGAAAATATGGAACAGACAAGACGACCGAATTAGTTCAACCACCAAAGAAGCTTTAAATTGAAACTCTACTATATACTAGAAACAGAAATTATTTGGAGGAAAAAAGTCACCACTGAACGAAAAGTGTTAGGAACAGTGTATCAATTGTTTGCTAAGAATAAAACTTCAATTGGCTCTTTACAATGGAATTGGAGGAGGCCTTTGATATGGTTGATTGAAATTTATTGAATCAATATGCTATTGGAGAAAAAGGACTTTGGCCTGCAATTTTCTATTGTTTAACGCAAAGTCTTAGGGTAGAATTAAAGCTTCAAGGGGGCGAGACTCTCAGTTTACTGAAATTTTGTCCTATTCCCTACCCTGAGGAGGTCACTCAGGTGGACAATAGCAAGAGGACTAACAAACTCTCATAGGGACCCAAACTAACTCTTATTCAATATGTTTTACCTAGAATTTGAGGATACACCTCTCTTCGAAATTCCTATTTCTACTGCCATGACGATTCCATGTCAACAGGCTGCCACCTTGTGTCATGTAACATTCATGATCTTCCTCTAGGGGTTAGTATTGGCAATGTAATCAATCATAATCTGGATTCCGGCCCTCGTTTTTAAATGGTCGTAGAGATTCTCAAATGAACAAATTTGCTCTATCGCTAGGTCATTCATGAGACCTTTCTCACTGATTAATCTCATATGGCCATAACCCCTATACTATTTTACTATGAAAAACAAATGTAGTAAGAGAGCTGACTATCAGGATTGGAGAGTTAAACTTCTAATTTAATACTGAAGACATCTCAAGGATGAGGAACTCCCAAATATTCGAGAGCTCTTGCAGGAACTAGCTCATTTAGGACACTGACCAATCTGCTAGGAAGAAGAAATTTGGGGTCTGGACAAATATGTTCGCAAGATTGATACCTTTTAGGAGAGTTGTACTAAACACCTTTAAGGAGTTGCTCGCATGATTGCATCCCTCTTCTTTTAGTCTCCAATAATATGCAGAGTCATCTCTTCCTATGCTTCAATTATGTATCTAACCTCTGGAGAAACCCTCACTCTCTTGATTAGCCTCTACAAAAGAGGATGAAATAATCTGTGTCAGTTTATCTGCTCTTGTCTATAACCATGGTGAAGTTTAATGTAGTCCATTATCGGGGTTGGTGGTTGTGGAATACCTGAGGGTATTGGTATTTGGCAATGCATATTTGCAGTTGATTTAGAAGCGTCTGCCTTATATATATATAAATGTATGTATGTCTGTATGTATATTTATACACACATAGATATCTTCTGTGTTTTGGGAAACAGTGAAGTTTCCCACGTTCGTTTAATATGGGAAACTTGAAATTGCAGATTAATATTTTtGTGGCCAAGAAAACATTAGATGTGTATAGGAGCCATCTATTTGTTACTGGAGCAATTAATTTGAGAAATGCTTTTGTTTGAATTTCAAAATATATTATTATCTCCCAGGATGGGATATTGACAAGGTTCCTGTTTTTtGTGGATTTCTTGTTTCTGTTTGGACTAAAGTTCATACGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTCGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCGTATGCTTATGTTAATCAGCCTCCACCATTTCCTGTTGTCAGACTACGGGGTTTGCCTTTCGATTGCATGGAAACTGATGTCGTTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTCGTCCACAAGAACGGCAAATTCACAGGGGAAGGTTTTTGTGTCTTGGGTTATCCTCTCCAGGTTGATTTTGCCCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGTCAAGAATACTACAAGGCTGTAGCTAATGAAGTTTTTGATGCCCGGGGTGGGTCACCGAGAAGAAGTGCCCCAAGGTCCAAGTTAAACGATGAGGTGAAAGACTCTGCTGAGCACACCGGTGTATTACGCTTGAGAGGACTGCCATATTCTGCAGGCAAAGATGACATACTGGACTTCTTCAAAGGTTTCAACTTATCAGAAGACTCAATTCATTTGACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTTGAATTCTCAAACGAACAAGACTCAAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGCTACATTGAGTTGTTCCCATCATCACATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGACACCACCTATAATTCTATTCACTGTTCTTCTTCAACTACTATGTTGTTTTGCTTTTGGAGCCAATGAGATTTATGGAGTTAGAAGTGAATAGGAGAGCTAAGTTTGTTTTGTGTGCTTATGGTAACCATACATTCTCTGTACTTTCCAGGACCATTATTTGCCAGTCGAGCAGGTTGTTTCGCACTCGACTGCATGAATTTGTGAAAAGAATTTGGTTTAGTAGGCCTCTCTCTATATGATGTATTAACCGTTTCTCTGTGCTGATGCTTAAAATATCTCCACCC TGTTAGGTATTTGTTGAGCTTCTTCCTCAAAATTCATGGGCCAGCCCGGAACGAAATCGGAAGGGTAGGGATCCATTGAGGCTTAACCGGAGGTCTCTTTCAGTTCCTTTCCTTCCTTCCTTCACCGTATTTGGATTTTGGAATTTCGATTCAGATTTCACAATCCAACTCAAGCTGCGACCCCTTCAACAACAATAACCAACTGGGTTATCCCCTATCAGCATGAACATGTTCTACCGAGGTTCATACGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTCGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCGTATGCTTATGTTAATCAGCCTCCACCATTTCCTGTTGTCAGACTACGGGGTTTGCCTTTCGATTGCATGGAAACTGATGTCGTTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTCGTCCACAAGAACGGCAAATTCACAGGGGAAGGTTTTTGTGTCTTGGGTTATCCTCTCCAGGTTGATTTTGCCCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGTCAAGAATACTACAAGGCTGTAGCTAATGAAGTTTTTGATGCCCGGGGTGGGTCACCGAGAAGAAGTGCCCCAAGGTCCAAGTTAAACGATGAGGTGAAAGACTCTGCTGAGCACACCGGTGTATTACGCTTGAGAGGACTGCCATATTCTGCAGGCAAAGATGACATACTGGACTTCTTCAAAGGTTTCAACTTATCAGAAGACTCAATTCATTTGACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTTGAATTCTCAAACGAACAAGACTCAAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGCTACATTGAGTTGTTCCCATCATCACATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGACACCACCTATAATTCTATTCACTGTTCTTCTTCAACTACTATGTTGTTTTGCTTTTGGAGCCAATGAGATTTATGGAGTTAGAAGTGAATAGGAGAGCTAAGTTTGTTTTGTGTGCTTATGGTAACCATACATTCTCTGTACTTTCCAGGACCATTATTTGCCAGTCGAGCAGGTTGTTTCGCACTCGACTGCATGAATTTGTGAAAAGAATTTGGTTTAGTAGGCCTCTCTCTATATGATGTATTAACCGTTTCTCTGTGCTGATGCTTAAAATATCTCCACCC ATGAACATGTTCTACCGAGGTTCATACGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTCGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCGTATGCTTATGTTAATCAGCCTCCACCATTTCCTGTTGTCAGACTACGGGGTTTGCCTTTCGATTGCATGGAAACTGATGTCGTTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTCGTCCACAAGAACGGCAAATTCACAGGGGAAGGTTTTTGTGTCTTGGGTTATCCTCTCCAGGTTGATTTTGCCCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGTCAAGAATACTACAAGGCTGTAGCTAATGAAGTTTTTGATGCCCGGGGTGGGTCACCGAGAAGAAGTGCCCCAAGGTCCAAGTTAAACGATGAGGTGAAAGACTCTGCTGAGCACACCGGTGTATTACGCTTGAGAGGACTGCCATATTCTGCAGGCAAAGATGACATACTGGACTTCTTCAAAGGTTTCAACTTATCAGAAGACTCAATTCATTTGACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTTGAATTCTCAAACGAACAAGACTCAAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGCTACATTGAGTTGTTCCCATCATCACATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGA MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR*
BLAST of Cucsa.065590.1 vs. Swiss-Prot
Match: HNRPF_HUMAN (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3) HSP 1 Score: 121.7 bits (304), Expect = 1.2e-26 Identity = 73/199 (36.68%), Postives = 116/199 (58.29%), Query Frame = 1
HSP 2 Score: 67.8 bits (164), Expect = 2.0e-10 Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 1
BLAST of Cucsa.065590.1 vs. Swiss-Prot
Match: HNRPF_MACFA (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 SV=3) HSP 1 Score: 121.7 bits (304), Expect = 1.2e-26 Identity = 73/199 (36.68%), Postives = 116/199 (58.29%), Query Frame = 1
HSP 2 Score: 67.8 bits (164), Expect = 2.0e-10 Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 1
BLAST of Cucsa.065590.1 vs. Swiss-Prot
Match: HNRPF_RAT (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus GN=Hnrnpf PE=1 SV=3) HSP 1 Score: 118.2 bits (295), Expect = 1.3e-25 Identity = 73/199 (36.68%), Postives = 114/199 (57.29%), Query Frame = 1
HSP 2 Score: 67.8 bits (164), Expect = 2.0e-10 Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 1
HSP 3 Score: 67.4 bits (163), Expect = 2.6e-10 Identity = 46/131 (35.11%), Postives = 68/131 (51.91%), Query Frame = 1
BLAST of Cucsa.065590.1 vs. Swiss-Prot
Match: HNRPF_MOUSE (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf PE=1 SV=3) HSP 1 Score: 118.2 bits (295), Expect = 1.3e-25 Identity = 73/199 (36.68%), Postives = 114/199 (57.29%), Query Frame = 1
HSP 2 Score: 67.8 bits (164), Expect = 2.0e-10 Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 1
HSP 3 Score: 67.4 bits (163), Expect = 2.6e-10 Identity = 46/131 (35.11%), Postives = 68/131 (51.91%), Query Frame = 1
BLAST of Cucsa.065590.1 vs. Swiss-Prot
Match: HNRPF_BOVIN (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3) HSP 1 Score: 117.9 bits (294), Expect = 1.7e-25 Identity = 72/199 (36.18%), Postives = 112/199 (56.28%), Query Frame = 1
HSP 2 Score: 67.8 bits (164), Expect = 2.0e-10 Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 1
HSP 3 Score: 67.4 bits (163), Expect = 2.6e-10 Identity = 45/131 (34.35%), Postives = 68/131 (51.91%), Query Frame = 1
BLAST of Cucsa.065590.1 vs. TrEMBL
Match: A0A0A0L205_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291930 PE=4 SV=1) HSP 1 Score: 532.3 bits (1370), Expect = 3.2e-148 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 1
BLAST of Cucsa.065590.1 vs. TrEMBL
Match: V7BNU2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G062500g PE=4 SV=1) HSP 1 Score: 448.0 bits (1151), Expect = 8.0e-123 Identity = 216/261 (82.76%), Postives = 235/261 (90.04%), Query Frame = 1
BLAST of Cucsa.065590.1 vs. TrEMBL
Match: A0A061GSA0_THECC (RNA-binding family protein OS=Theobroma cacao GN=TCM_040707 PE=4 SV=1) HSP 1 Score: 448.0 bits (1151), Expect = 8.0e-123 Identity = 211/260 (81.15%), Postives = 235/260 (90.38%), Query Frame = 1
BLAST of Cucsa.065590.1 vs. TrEMBL
Match: A0A0S3S6G9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G190200 PE=4 SV=1) HSP 1 Score: 447.6 bits (1150), Expect = 1.0e-122 Identity = 216/261 (82.76%), Postives = 234/261 (89.66%), Query Frame = 1
BLAST of Cucsa.065590.1 vs. TrEMBL
Match: F6GU40_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02220 PE=4 SV=1) HSP 1 Score: 447.6 bits (1150), Expect = 1.0e-122 Identity = 211/258 (81.78%), Postives = 235/258 (91.09%), Query Frame = 1
BLAST of Cucsa.065590.1 vs. TAIR10
Match: AT3G20890.1 (AT3G20890.1 RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 373.6 bits (958), Expect = 9.7e-104 Identity = 190/295 (64.41%), Postives = 219/295 (74.24%), Query Frame = 1
BLAST of Cucsa.065590.1 vs. TAIR10
Match: AT5G66010.1 (AT5G66010.1 RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 228.0 bits (580), Expect = 6.6e-60 Identity = 120/255 (47.06%), Postives = 168/255 (65.88%), Query Frame = 1
BLAST of Cucsa.065590.1 vs. NCBI nr
Match: gi|449448717|ref|XP_004142112.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein F [Cucumis sativus]) HSP 1 Score: 532.3 bits (1370), Expect = 4.6e-148 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 1
BLAST of Cucsa.065590.1 vs. NCBI nr
Match: gi|1009118465|ref|XP_015875875.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Ziziphus jujuba]) HSP 1 Score: 453.0 bits (1164), Expect = 3.6e-124 Identity = 214/258 (82.95%), Postives = 235/258 (91.09%), Query Frame = 1
BLAST of Cucsa.065590.1 vs. NCBI nr
Match: gi|645241927|ref|XP_008227311.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein F [Prunus mume]) HSP 1 Score: 448.4 bits (1152), Expect = 8.8e-123 Identity = 211/258 (81.78%), Postives = 232/258 (89.92%), Query Frame = 1
BLAST of Cucsa.065590.1 vs. NCBI nr
Match: gi|694432753|ref|XP_009343715.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Pyrus x bretschneideri]) HSP 1 Score: 448.4 bits (1152), Expect = 8.8e-123 Identity = 210/258 (81.40%), Postives = 236/258 (91.47%), Query Frame = 1
BLAST of Cucsa.065590.1 vs. NCBI nr
Match: gi|593692324|ref|XP_007146704.1| (hypothetical protein PHAVU_006G062500g [Phaseolus vulgaris]) HSP 1 Score: 448.0 bits (1151), Expect = 1.2e-122 Identity = 216/261 (82.76%), Postives = 235/261 (90.04%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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