CsaV3_7G008810 (gene) Cucumber (Chinese Long) v3

NameCsaV3_7G008810
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptiontype IV secretion system protein virB10-like
Locationchr7 : 5497263 .. 5498368 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACTCCCATCGACCAACTCCAGCCCCCCCCGCCCCTTCACTCCTCCCACGCCTCTGTCGGCCCCCTCATCGCCGTCCTCGCCGTCATTTCCATCCTTGGCGTCATTGCTGGTATGATTGGCCGCCTCTGCTCCGGCCGCCCCGTCTTCGGCTACGGCGCACACTACGACCTCGAGGATTGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGCTCCCTCGACCCCCCTCCTCCTCCGCCTCATCTCCGCCACCCACCGCCTCTGGATTCTGTTCCTGTGGCTGAACCTCTTGGTGGGCCTCCGCCGGAGATCAAACAAAGCGCCCATGCCGATGCTGATGCTAAAGGGGAGAATTTGCAGTCGGCGGCTCCTGGAACCGGCGGTGAGTCATGAGATTTAATAAGAAGAGTAAAGTTGTTTCCTTTTTTTCTTTGTTCTTCTTTTTTGTGGTTCAATTTTTATTCTTTTACAAATCCTATCTGGTGGATGAATGAATGAATCTTTGCCTCTTTTATATATATATATATATATATATATATATTTCTCTCTCTCTTTATTTGCAATTTAAACACTAATTTCCTTCATTTTTATCCTTTACTTTGAAATATTTTTTGTAATAAACAAATTTTGTTTATCTTAGTCCTCATACACTAAAATAGTGAATTTTAATAAAAGAACTCAAATGGGCAATGTTTTTAGAAAAACAATATTTTGTGAAAGTAAAGGAAATAAAAATGAATAGTTTCAATTAAAAAATTGGAATTGAATCAAAATAATAATGAAAAAAAGAATCATACTTTCACCATAATAGTGAAAATAAGAGTGAAAGTAGCATAGTTTTTAGACATAAGAAAAGGAGACAAAGTATTTACAAATATTAGCAAAATTTGAAATATATTACTTCTTTTTTAAGTGGTTGATAGCTATATGATATATCCATATTCTAAAATTTTGCTATCTATTTAAAGAAAGTTTCGATGTTATATATCAATTGGGGGGATGGCATTGACTGTTAAGGCAAGAGACTCTTTTGTTATGTTTACATTCCCTTTTCTTTCTTTCTTTTTCTTTTTCAATACTAGGCAGGGGCTTGGTGCTAG

mRNA sequence

ATGTCCACTCCCATCGACCAACTCCAGCCCCCCCCGCCCCTTCACTCCTCCCACGCCTCTGTCGGCCCCCTCATCGCCGTCCTCGCCGTCATTTCCATCCTTGGCGTCATTGCTGGTATGATTGGCCGCCTCTGCTCCGGCCGCCCCGTCTTCGGCTACGGCGCACACTACGACCTCGAGGATTGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGCTCCCTCGACCCCCCTCCTCCTCCGCCTCATCTCCGCCACCCACCGCCTCTGGATTCTGTTCCTGTGGCTGAACCTCTTGGTGGGCCTCCGCCGGAGATCAAACAAAGCGCCCATGCCGATGCTGATGCTAAAGGGGAGAATTTGCAGTCGGCGGCTCCTGGAACCGGCGGGGCTTGGTGCTAG

Coding sequence (CDS)

ATGTCCACTCCCATCGACCAACTCCAGCCCCCCCCGCCCCTTCACTCCTCCCACGCCTCTGTCGGCCCCCTCATCGCCGTCCTCGCCGTCATTTCCATCCTTGGCGTCATTGCTGGTATGATTGGCCGCCTCTGCTCCGGCCGCCCCGTCTTCGGCTACGGCGCACACTACGACCTCGAGGATTGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGCTCCCTCGACCCCCCTCCTCCTCCGCCTCATCTCCGCCACCCACCGCCTCTGGATTCTGTTCCTGTGGCTGAACCTCTTGGTGGGCCTCCGCCGGAGATCAAACAAAGCGCCCATGCCGATGCTGATGCTAAAGGGGAGAATTTGCAGTCGGCGGCTCCTGGAACCGGCGGGGCTTGGTGCTAG

Protein sequence

MSTPIDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDLEDWVEKKCASCLDGSLDPPPPPPHLRHPPPLDSVPVAEPLGGPPPEIKQSAHADADAKGENLQSAAPGTGGAWC
BLAST of CsaV3_7G008810 vs. NCBI nr
Match: KGN43952.1 (hypothetical protein Csa_7G074850 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 9.6e-53
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0

Query: 1   MSTPIDQLQPPPPLHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHYDLE 60
           MSTPIDQLQPPPPLHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHYDLE
Sbjct: 1   MSTPIDQLQPPPPLHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHYDLE 60

Query: 61  DWVEKKCASCLDGSLDPXXXXXXXXXXXXLDSVPVAEPLGGPPPEIKQSAHADADAKGEN 120
           DWVEKKCASCLDGSLDPXXXXXXXXXXXXLDSVPVAEPLGGPPPEIKQSAHADADAKGEN
Sbjct: 61  DWVEKKCASCLDGSLDPXXXXXXXXXXXXLDSVPVAEPLGGPPPEIKQSAHADADAKGEN 120

Query: 121 LQSAAPGTGG 131
           LQSAAPGTGG
Sbjct: 121 LQSAAPGTGG 130

BLAST of CsaV3_7G008810 vs. NCBI nr
Match: XP_008455516.1 (PREDICTED: type IV secretion system protein virB10-like [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 2.3e-46
Identity = 125/134 (93.28%), Postives = 126/134 (94.03%), Query Frame = 0

Query: 1   MSTPIDQLQPPPPLHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHYDLE 60
           MSTPIDQLQPPPPLHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHYD+E
Sbjct: 1   MSTPIDQLQPPPPLHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHYDVE 60

Query: 61  DWVEKKCASCLDGSLD----PXXXXXXXXXXXXLDSVPVAEPLGGPPPEIKQSAHADADA 120
           DWVEKKCASCLDGSLD     XXXXXXXXXXXXLDSVPVAEPLGGPPPEIKQ   ADADA
Sbjct: 61  DWVEKKCASCLDGSLDXXXXXXXXXXXXXXXXXLDSVPVAEPLGGPPPEIKQG--ADADA 120

Query: 121 KGENLQSAAPGTGG 131
           KGENLQSAAPGTGG
Sbjct: 121 KGENLQSAAPGTGG 132

BLAST of CsaV3_7G008810 vs. NCBI nr
Match: XP_022972364.1 (uncharacterized protein LOC111470940 [Cucurbita maxima])

HSP 1 Score: 141.7 bits (356), Expect = 1.8e-30
Identity = 88/130 (67.69%), Postives = 91/130 (70.00%), Query Frame = 0

Query: 1   MSTPIDQLQPPPPLHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHYDLE 60
           MSTP DQLQPPP  HS          XXXXXXXXXXX     RLCSGRPVFGYGAHYD+E
Sbjct: 1   MSTPFDQLQPPPTAHSXXXXXXXXXXXXXXXXXXXXXXXXXXRLCSGRPVFGYGAHYDVE 60

Query: 61  DWVEKKCASCLDGSLDPXXXXXXXXXXXXLDSVPVAEPLGGPPPEIKQSAHADADAKGEN 120
           +WVEKKCASCLDGSLDP            LD+VPV EPLGG PPEIKQ     AD K EN
Sbjct: 61  EWVEKKCASCLDGSLDPPPPPAHLRHPPPLDAVPVVEPLGG-PPEIKQG----ADEKREN 120

Query: 121 LQSAAPGTGG 131
           LQSAAPGTGG
Sbjct: 121 LQSAAPGTGG 125

BLAST of CsaV3_7G008810 vs. NCBI nr
Match: XP_022989510.1 (uncharacterized protein LOC111486567 [Cucurbita maxima])

HSP 1 Score: 141.0 bits (354), Expect = 3.0e-30
Identity = 84/133 (63.16%), Postives = 98/133 (73.68%), Query Frame = 0

Query: 1   MSTPIDQLQPPP---PLHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHY 60
           MS P+DQLQPPP    +H +  SVGP+I XXXXXXXXXX AGMIGR+C GRPVFGY AHY
Sbjct: 1   MSVPLDQLQPPPAAAAIHPAQGSVGPVIXXXXXXXXXXXIAGMIGRVCFGRPVFGYNAHY 60

Query: 61  DLEDWVEKKCASCLDGSLDPXXXXXXXXXXXXLDSVPVAEPLGGPPPEIKQSAHADADAK 120
           D+EDWVEKKCA+CLDGSLDP            ++++PVAEPLGG PP IK+    D D +
Sbjct: 61  DVEDWVEKKCATCLDGSLDP---PPLLRPPPPIEAIPVAEPLGG-PPNIKED--GDGDKE 120

Query: 121 GENLQSAAPGTGG 131
            ENLQS  PG+GG
Sbjct: 121 RENLQSVPPGSGG 127

BLAST of CsaV3_7G008810 vs. NCBI nr
Match: XP_022927713.1 (uncharacterized protein LOC111434531 [Cucurbita moschata])

HSP 1 Score: 139.8 bits (351), Expect = 6.7e-30
Identity = 83/133 (62.41%), Postives = 97/133 (72.93%), Query Frame = 0

Query: 1   MSTPIDQLQPPP---PLHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHY 60
           MS P+DQLQPPP    +H +  SVGP+I XXXXXXXXX  AGMIGR+C GRPVFGY A Y
Sbjct: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIXXXXXXXXXXFIAGMIGRVCFGRPVFGYNAQY 60

Query: 61  DLEDWVEKKCASCLDGSLDPXXXXXXXXXXXXLDSVPVAEPLGGPPPEIKQSAHADADAK 120
           D+EDWVEKKCASCLDGSLDP            ++++PV+EPLGG PP IK+    D D +
Sbjct: 61  DVEDWVEKKCASCLDGSLDP---PPHLRPPPPIEAIPVSEPLGG-PPNIKEG--GDGDRE 120

Query: 121 GENLQSAAPGTGG 131
            ENLQS APG+GG
Sbjct: 121 RENLQSVAPGSGG 127

BLAST of CsaV3_7G008810 vs. TAIR10
Match: AT2G26520.1 (unknown protein)

HSP 1 Score: 61.2 bits (147), Expect = 5.5e-10
Identity = 30/77 (38.96%), Postives = 41/77 (53.25%), Query Frame = 0

Query: 9  QPPPPLHSS----------HASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHYD 68
          QPPP    S          ++++GP IA           A +IGRLCSG+ + GYG  YD
Sbjct: 9  QPPPATEVSQDSSSVSSAGNSTIGPFIAVFIVVTVLCVLASVIGRLCSGKTILGYG-DYD 68

Query: 69 LEDWVEKKCASCLDGSL 76
          +E W E +C SC+DG +
Sbjct: 69 MERWAESRCGSCIDGHI 84

BLAST of CsaV3_7G008810 vs. TAIR10
Match: AT3G57500.1 (unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.6e-07
Identity = 24/67 (35.82%), Postives = 35/67 (52.24%), Query Frame = 0

Query: 9  QPPPPLHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHYDLEDWVEKKCA 68
          Q  P  +S H S+  L+            AG+  RLC GR +  +G  +D+E WVE+KC 
Sbjct: 26 QDQPSHNSDHRSIETLVVVLAVITILSVLAGVFARLCGGRHL-SHGGDHDIEGWVERKCR 85

Query: 69 SCLDGSL 76
          SC+D  +
Sbjct: 86 SCIDAGI 91

BLAST of CsaV3_7G008810 vs. TrEMBL
Match: tr|A0A0A0K6N4|A0A0A0K6N4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074850 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 6.4e-53
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0

Query: 1   MSTPIDQLQPPPPLHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHYDLE 60
           MSTPIDQLQPPPPLHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHYDLE
Sbjct: 1   MSTPIDQLQPPPPLHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHYDLE 60

Query: 61  DWVEKKCASCLDGSLDPXXXXXXXXXXXXLDSVPVAEPLGGPPPEIKQSAHADADAKGEN 120
           DWVEKKCASCLDGSLDPXXXXXXXXXXXXLDSVPVAEPLGGPPPEIKQSAHADADAKGEN
Sbjct: 61  DWVEKKCASCLDGSLDPXXXXXXXXXXXXLDSVPVAEPLGGPPPEIKQSAHADADAKGEN 120

Query: 121 LQSAAPGTGG 131
           LQSAAPGTGG
Sbjct: 121 LQSAAPGTGG 130

BLAST of CsaV3_7G008810 vs. TrEMBL
Match: tr|A0A1S3C1T9|A0A1S3C1T9_CUCME (type IV secretion system protein virB10-like OS=Cucumis melo OX=3656 GN=LOC103495668 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.5e-46
Identity = 125/134 (93.28%), Postives = 126/134 (94.03%), Query Frame = 0

Query: 1   MSTPIDQLQPPPPLHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHYDLE 60
           MSTPIDQLQPPPPLHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHYD+E
Sbjct: 1   MSTPIDQLQPPPPLHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHYDVE 60

Query: 61  DWVEKKCASCLDGSLD----PXXXXXXXXXXXXLDSVPVAEPLGGPPPEIKQSAHADADA 120
           DWVEKKCASCLDGSLD     XXXXXXXXXXXXLDSVPVAEPLGGPPPEIKQ   ADADA
Sbjct: 61  DWVEKKCASCLDGSLDXXXXXXXXXXXXXXXXXLDSVPVAEPLGGPPPEIKQG--ADADA 120

Query: 121 KGENLQSAAPGTGG 131
           KGENLQSAAPGTGG
Sbjct: 121 KGENLQSAAPGTGG 132

BLAST of CsaV3_7G008810 vs. TrEMBL
Match: tr|A0A2P6PMT8|A0A2P6PMT8_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0259071 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.5e-14
Identity = 52/86 (60.47%), Postives = 62/86 (72.09%), Query Frame = 0

Query: 2  STPIDQLQPPPP----------LHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVF 61
          +TP+DQLQPPPP           HS H SV     XXXXXXXXXXXAGMIGRLCSGR V 
Sbjct: 3  ATPMDQLQPPPPPVYVTQQAYTTHSGHGSVXXXXXXXXXXXXXXXXAGMIGRLCSGRRVM 62

Query: 62 GYGAHYDLEDWVEKKCASCLDGSLDP 78
          G+G +YD E W+EK+C+SC+DG ++P
Sbjct: 63 GHGQYYDFEAWLEKRCSSCIDGRIEP 88

BLAST of CsaV3_7G008810 vs. TrEMBL
Match: tr|A0A061FJB6|A0A061FJB6_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_033911 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.3e-12
Identity = 50/85 (58.82%), Postives = 62/85 (72.94%), Query Frame = 0

Query: 1  MSTPIDQLQPPP-----PLHS---SHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFG 60
          MS P+ Q QPPP     P +S   +HAS+GP+IA XXXXXXXX  AGMIGRLC+GR + G
Sbjct: 1  MSMPLVQ-QPPPVTVTQPYNSHATTHASIGPVIAVXXXXXXXXILAGMIGRLCTGRKIMG 60

Query: 61 YGAHYDLEDWVEKKCASCLDGSLDP 78
          YG  YD+E W+E KC+SC+DG + P
Sbjct: 61 YG-QYDIESWIETKCSSCIDGRIYP 83

BLAST of CsaV3_7G008810 vs. TrEMBL
Match: tr|A0A2G5EK70|A0A2G5EK70_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_00700481v1 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-11
Identity = 47/84 (55.95%), Postives = 58/84 (69.05%), Query Frame = 0

Query: 16  SSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHYDLEDWVEKKCASCLDGSL 75
           +SH SVG LI            AGMIGRLCSGR + G+G +YD E W+EK CASC+DG +
Sbjct: 27  TSHGSVGALIGVLAVITILGVIAGMIGRLCSGRQIMGHG-NYDFEGWIEKNCASCIDGGI 86

Query: 76  DPXXXXXXXXXXXXLDSVPVAEPL 100
           DPXXXXXXXXX    +S+P+A P+
Sbjct: 87  DPXXXXXXXXXSSH-NSIPIASPV 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN43952.19.6e-53100.00hypothetical protein Csa_7G074850 [Cucumis sativus][more]
XP_008455516.12.3e-4693.28PREDICTED: type IV secretion system protein virB10-like [Cucumis melo][more]
XP_022972364.11.8e-3067.69uncharacterized protein LOC111470940 [Cucurbita maxima][more]
XP_022989510.13.0e-3063.16uncharacterized protein LOC111486567 [Cucurbita maxima][more]
XP_022927713.16.7e-3062.41uncharacterized protein LOC111434531 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT2G26520.15.5e-1038.96unknown protein[more]
AT3G57500.12.6e-0735.82unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0K6N4|A0A0A0K6N4_CUCSA6.4e-53100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074850 PE=4 SV=1[more]
tr|A0A1S3C1T9|A0A1S3C1T9_CUCME1.5e-4693.28type IV secretion system protein virB10-like OS=Cucumis melo OX=3656 GN=LOC10349... [more]
tr|A0A2P6PMT8|A0A2P6PMT8_ROSCH4.5e-1460.47Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0259071 PE=4... [more]
tr|A0A061FJB6|A0A061FJB6_THECC9.3e-1258.82Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_033911 PE=4 SV=1[more]
tr|A0A2G5EK70|A0A2G5EK70_AQUCA1.6e-1155.95Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_00700481v1 PE=4... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0044710 single-organism metabolic process
biological_process GO:1902589 single-organism organelle organization
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0000723 telomere maintenance
cellular_component GO:0005575 cellular_component
cellular_component GO:0044430 cytoskeletal part
cellular_component GO:0015630 microtubule cytoskeleton
cellular_component GO:0005815 microtubule organizing center
cellular_component GO:0000922 spindle pole
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0005488 binding
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding
molecular_function GO:0016491 oxidoreductase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G008810.1CsaV3_7G008810.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..133
NoneNo IPR availablePANTHERPTHR33429FAMILY NOT NAMEDcoord: 12..113
NoneNo IPR availablePANTHERPTHR33429:SF5SUBFAMILY NOT NAMEDcoord: 12..113

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_7G008810CsaV3_2G028190Cucumber (Chinese Long) v3cuccucB100