Carg22050 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22050
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	type IV secretion system protein virB10-like
Location	Cucurbita_argyrosperma_scaffold_175 : 336728 .. 337120 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCACTCCCGTCGACCAGCTCCAGCCCCCGCCGACCGCTCATTCCGGCCACGGCTCCGTCGGTCCAGTCATCGCCGTCCTCGCAGTCATTTCCATCCTCGGCGTCATCGCCGGCATTATCGGCCGTCTCTGCTCCGGCCGCCCCGTCTTCGGCTACGGCGCCCACTACGACGTCGAGGAATGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGCTCCCTCGACCCTCCTCCTCCGCCGCCGCCGCCGCCGCATCTCCGCCACCCTCCGCCGCTCGATGCCGTTCCTGTAGTCGAACCCCTTGGTGGGCCGCCGGAAATCAAGCAAGGCGCCGATGACAAACGCGAGAATTTGCAGTCGGCGGCTCCCGGAACCGGCGGTGAGTCGTGA

mRNA sequence

ATGTCCACTCCCGTCGACCAGCTCCAGCCCCCGCCGACCGCTCATTCCGGCCACGGCTCCGTCGGTCCAGTCATCGCCGTCCTCGCAGTCATTTCCATCCTCGGCGTCATCGCCGGCATTATCGGCCGTCTCTGCTCCGGCCGCCCCGTCTTCGGCTACGGCGCCCACTACGACGTCGAGGAATGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGCTCCCTCGACCCTCCTCCTCCGCCGCCGCCGCCGCCGCATCTCCGCCACCCTCCGCCGCTCGATGCCGTTCCTGTAGTCGAACCCCTTGGTGGGCCGCCGGAAATCAAGCAAGGCGCCGATGACAAACGCGAGAATTTGCAGTCGGCGGCTCCCGGAACCGGCGGTGAGTCGTGA

Coding sequence (CDS)

ATGTCCACTCCCGTCGACCAGCTCCAGCCCCCGCCGACCGCTCATTCCGGCCACGGCTCCGTCGGTCCAGTCATCGCCGTCCTCGCAGTCATTTCCATCCTCGGCGTCATCGCCGGCATTATCGGCCGTCTCTGCTCCGGCCGCCCCGTCTTCGGCTACGGCGCCCACTACGACGTCGAGGAATGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGCTCCCTCGACCCTCCTCCTCCGCCGCCGCCGCCGCCGCATCTCCGCCACCCTCCGCCGCTCGATGCCGTTCCTGTAGTCGAACCCCTTGGTGGGCCGCCGGAAATCAAGCAAGGCGCCGATGACAAACGCGAGAATTTGCAGTCGGCGGCTCCCGGAACCGGCGGTGAGTCGTGA

Protein sequence

MSTPVDQLQPPPTAHSGHGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQGADDKRENLQSAAPGTGGES

Homology

[Close]

BLAST of Carg22050 vs. NCBI nr
Match: XP_022952791.1 (uncharacterized protein LOC111455383 [Cucurbita moschata])

HSP 1 Score: 164.1 bits (414), Expect = 3.2e-37
Identity = 124/128 (96.88%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 1   MSTPVDQLQPPPTAHSXXXXXXXXXXXXXXXXXXXXXXXXXXRLCSGRPVFGYGAHYDVE 60
           MSTPVDQLQPPPTAHS  XXXXXXXXXXXXXXXXXXXXXXXXRLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPVDQLQPPPTAHSGYXXXXXXXXXXXXXXXXXXXXXXXXRLCSGRPVFGYGAHYDVE 60

Query: 61  EWVEKKCASCLDGSLDXXXXXXXXXXXXXXXXLDAVPVVEPLGGPPEIKQGADDKRENLQ 120
           EWVEKKCASCLDGSLD  XXXXXXXXXXXXXXLDAVPVVEPLGGPPEIKQGADDKRENLQ
Sbjct: 61  EWVEKKCASCLDGSLD--XXXXXXXXXXXXXXLDAVPVVEPLGGPPEIKQGADDKRENLQ 120

Query: 121 SAAPGTGG 129
           SAAPGTGG
Sbjct: 121 SAAPGTGG 126

[Close]

BLAST of Carg22050 vs. NCBI nr
Match: XP_022972364.1 (uncharacterized protein LOC111470940 [Cucurbita maxima])

HSP 1 Score: 160.6 bits (405), Expect = 3.6e-36
Identity = 110/128 (85.94%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 1   MSTPVDQLQPPPTAHSXXXXXXXXXXXXXXXXXXXXXXXXXXRLCSGRPVFGYGAHYDVE 60
           MSTP DQLQPPPTAHSXXXXXXXXXXXXXXXXXXXXXXXXXXRLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPFDQLQPPPTAHSXXXXXXXXXXXXXXXXXXXXXXXXXXRLCSGRPVFGYGAHYDVE 60

Query: 61  EWVEKKCASCLDGSLDXXXXXXXXXXXXXXXXLDAVPVVEPLGGPPEIKQGADDKRENLQ 120
           EWVEKKCASCLDGSLD                LDAVPVVEPLGGPPEIKQGAD+KRENLQ
Sbjct: 61  EWVEKKCASCLDGSLD---PPPPPAHLRHPPPLDAVPVVEPLGGPPEIKQGADEKRENLQ 120

Query: 121 SAAPGTGG 129
           SAAPGTGG
Sbjct: 121 SAAPGTGG 125

[Close]

BLAST of Carg22050 vs. NCBI nr
Match: XP_008455516.1 (PREDICTED: type IV secretion system protein virB10-like [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 7.7e-31
Identity = 107/134 (79.85%), Postives = 110/134 (82.09%), Query Frame = 0


Query: 1   MSTPVDQLQPPPTAHSXXXXXXXXXXXXXXXXXXXXXXXXXXRLCSGRPVFGYGAHYDVE 60
           MSTP+DQLQPPP  HS          XXXXXXXXXXX     RLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPIDQLQPPPPLHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHYDVE 60

Query: 61  EWVEKKCASCLDGSLD-XXXXXXXXXXXXXXXXLDAVPVVEPLGG-PPEIKQG--ADDKR 120
           +WVEKKCASCLDGSLD XXXXXXXXXXXXXXXXLD+VPV EPLGG PPEIKQG  AD K 
Sbjct: 61  DWVEKKCASCLDGSLDXXXXXXXXXXXXXXXXXLDSVPVAEPLGGPPPEIKQGADADAKG 120

Query: 121 ENLQSAAPGTGGES 131
           ENLQSAAPGTGGES
Sbjct: 121 ENLQSAAPGTGGES 134

[Close]

BLAST of Carg22050 vs. NCBI nr
Match: KGN43952.1 (hypothetical protein Csa_7G074850 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 1.1e-29
Identity = 101/135 (74.81%), Postives = 105/135 (77.78%), Query Frame = 0


Query: 1   MSTPVDQLQPPPTAHSXXXXXXXXXXXXXXXXXXXXXXXXXXRLCSGRPVFGYGAHYDVE 60
           MSTP+DQLQPPP  HS          XXXXXXXXXXX     RLCSGRPVFGYGAHYD+E
Sbjct: 1   MSTPIDQLQPPPPLHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHYDLE 60

Query: 61  EWVEKKCASCLDGSLDXXXXXXXXXXXXXXXXLDAVPVVEPLGG-PPEIKQG----ADDK 120
           +WVEKKCASCLDGSLD    XXXXXXXXXXXXLD+VPV EPLGG PPEIKQ     AD K
Sbjct: 61  DWVEKKCASCLDGSLD---PXXXXXXXXXXXXLDSVPVAEPLGGPPPEIKQSAHADADAK 120

Query: 121 RENLQSAAPGTGGES 131
            ENLQSAAPGTGGES
Sbjct: 121 GENLQSAAPGTGGES 132

[Close]

BLAST of Carg22050 vs. NCBI nr
Match: XP_022927713.1 (uncharacterized protein LOC111434531 [Cucurbita moschata])

HSP 1 Score: 123.2 bits (308), Expect = 6.3e-25
Identity = 78/135 (57.78%), Postives = 88/135 (65.19%), Query Frame = 0


Query: 1   MSTPVDQLQPPPTA---HSXXXXXXXXXXXXXXXXXXXXXXXXXXRLCSGRPVFGYGAHY 60
           MS P+DQLQPPP+A   H          XXXXXXXXXX       R+C GRPVFGY A Y
Sbjct: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIXXXXXXXXXXFIAGMIGRVCFGRPVFGYNAQY 60

Query: 61  DVEEWVEKKCASCLDGSLDXXXXXXXXXXXXXXXXLDAVPVVEPLGGPPEIKQGADD--K 120
           DVE+WVEKKCASCLDGSLD                ++A+PV EPLGGPP IK+G D   +
Sbjct: 61  DVEDWVEKKCASCLDGSLD------PPPHLRPPPPIEAIPVSEPLGGPPNIKEGGDGDRE 120

Query: 121 RENLQSAAPGTGGES 131
           RENLQS APG+GGES
Sbjct: 121 RENLQSVAPGSGGES 129

[Close]

BLAST of Carg22050 vs. TAIR10
Match: AT3G57500.1 (unknown protein)

HSP 1 Score: 43.1 bits (100), Expect = 1.5e-04
Identity = 16/33 (48.48%), Postives = 23/33 (69.70%), Query Frame = 0


Query: 43 RLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSL 76
          RLC GR +  +G  +D+E WVE+KC SC+D  +
Sbjct: 60 RLCGGRHL-SHGGDHDIEGWVERKCRSCIDAGI 91

[Close]

BLAST of Carg22050 vs. TrEMBL
Match: tr|A0A1S3C1T9|A0A1S3C1T9_CUCME (type IV secretion system protein virB10-like OS=Cucumis melo OX=3656 GN=LOC103495668 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.1e-31
Identity = 107/134 (79.85%), Postives = 110/134 (82.09%), Query Frame = 0


Query: 1   MSTPVDQLQPPPTAHSXXXXXXXXXXXXXXXXXXXXXXXXXXRLCSGRPVFGYGAHYDVE 60
           MSTP+DQLQPPP  HS          XXXXXXXXXXX     RLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPIDQLQPPPPLHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHYDVE 60

Query: 61  EWVEKKCASCLDGSLD-XXXXXXXXXXXXXXXXLDAVPVVEPLGG-PPEIKQG--ADDKR 120
           +WVEKKCASCLDGSLD XXXXXXXXXXXXXXXXLD+VPV EPLGG PPEIKQG  AD K 
Sbjct: 61  DWVEKKCASCLDGSLDXXXXXXXXXXXXXXXXXLDSVPVAEPLGGPPPEIKQGADADAKG 120

Query: 121 ENLQSAAPGTGGES 131
           ENLQSAAPGTGGES
Sbjct: 121 ENLQSAAPGTGGES 134

[Close]

BLAST of Carg22050 vs. TrEMBL
Match: tr|A0A0A0K6N4|A0A0A0K6N4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074850 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.3e-30
Identity = 101/135 (74.81%), Postives = 105/135 (77.78%), Query Frame = 0


Query: 1   MSTPVDQLQPPPTAHSXXXXXXXXXXXXXXXXXXXXXXXXXXRLCSGRPVFGYGAHYDVE 60
           MSTP+DQLQPPP  HS          XXXXXXXXXXX     RLCSGRPVFGYGAHYD+E
Sbjct: 1   MSTPIDQLQPPPPLHSSHASVGPLIAXXXXXXXXXXXAGMIGRLCSGRPVFGYGAHYDLE 60

Query: 61  EWVEKKCASCLDGSLDXXXXXXXXXXXXXXXXLDAVPVVEPLGG-PPEIKQG----ADDK 120
           +WVEKKCASCLDGSLD    XXXXXXXXXXXXLD+VPV EPLGG PPEIKQ     AD K
Sbjct: 61  DWVEKKCASCLDGSLD---PXXXXXXXXXXXXLDSVPVAEPLGGPPPEIKQSAHADADAK 120

Query: 121 RENLQSAAPGTGGES 131
            ENLQSAAPGTGGES
Sbjct: 121 GENLQSAAPGTGGES 132

[Close]

BLAST of Carg22050 vs. TrEMBL
Match: tr|A0A2P6PMT8|A0A2P6PMT8_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0259071 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 48/85 (56.47%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 2  STPVDQLQPPP----------TAHSXXXXXXXXXXXXXXXXXXXXXXXXXXRLCSGRPVF 61
          +TP+DQLQPPP          T HS     XXXXXXXXXXXXXXXX     RLCSGR V 
Sbjct: 3  ATPMDQLQPPPPPVYVTQQAYTTHSGHGSVXXXXXXXXXXXXXXXXAGMIGRLCSGRRVM 62

Query: 62 GYGAHYDVEEWVEKKCASCLDGSLD 77
          G+G +YD E W+EK+C+SC+DG ++
Sbjct: 63 GHGQYYDFEAWLEKRCSSCIDGRIE 87

[Close]

BLAST of Carg22050 vs. TrEMBL
Match: tr|A0A067KPY1|A0A067KPY1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04879 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-07
Identity = 69/120 (57.50%), Postives = 77/120 (64.17%), Query Frame = 0


Query: 1   MSTPVDQLQPPP--------TAHSXXXXXXXXXXXXXXXXXXXXXXXXXXRLCSGRPVFG 60
           MSTP+DQ QPPP        TA  XXXXXXXXXXXXXXXXXXXXXXXXX RLCSGR + G
Sbjct: 1   MSTPLDQQQPPPMEVTQQVYTAXXXXXXXXXXXXXXXXXXXXXXXXXXXGRLCSGRRIMG 60

Query: 61  YGAHYDVEEWVEKKCASCLDGSLDXXXXXXXXXXXXXXXXLDAVPVVEPL--GGPPEIKQ 111
           +G  YD E WVE+KC+SCLDG +D                   +PV EPL   GP EIK+
Sbjct: 61  HG-QYDFEGWVERKCSSCLDGRVDPPPAPPAD-----------IPVAEPLEETGPQEIKE 108

[Close]

BLAST of Carg22050 vs. TrEMBL
Match: tr|A0A2P5BK60|A0A2P5BK60_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_231710 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 33/60 (55.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 43  RLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDXXXXXXXXXXXXXXXXLDAVPVVEPL 102
           RLCSGR V G+G +YD E WVE+KC+SCLDG+LD  XXX            D VPV  PL
Sbjct: 52  RLCSGRRVMGHGQYYDFEGWVERKCSSCLDGTLDPPXXXAVTASR------DEVPVAMPL 105

The following BLAST results are available for this feature:

BLAST of Carg22050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952791.1	3.2e-37	96.88	uncharacterized protein LOC111455383 [Cucurbita moschata]	[more]
XP_022972364.1	3.6e-36	85.94	uncharacterized protein LOC111470940 [Cucurbita maxima]	[more]
XP_008455516.1	7.7e-31	79.85	PREDICTED: type IV secretion system protein virB10-like [Cucumis melo]	[more]
KGN43952.1	1.1e-29	74.81	hypothetical protein Csa_7G074850 [Cucumis sativus]	[more]
XP_022927713.1	6.3e-25	57.78	uncharacterized protein LOC111434531 [Cucurbita moschata]	[more]

BLAST of Carg22050 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57500.1	1.5e-04	48.48	unknown protein	[more]

BLAST of Carg22050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22050 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C1T9\|A0A1S3C1T9_CUCME	5.1e-31	79.85	type IV secretion system protein virB10-like OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
tr\|A0A0A0K6N4\|A0A0A0K6N4_CUCSA	7.3e-30	74.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074850 PE=4 SV=1	[more]
tr\|A0A2P6PMT8\|A0A2P6PMT8_ROSCH	1.3e-07	56.47	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0259071 PE=4...	[more]
tr\|A0A067KPY1\|A0A067KPY1_JATCU	1.8e-07	57.50	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04879 PE=4 SV=1	[more]
tr\|A0A2P5BK60\|A0A2P5BK60_PARAD	1.9e-06	55.00	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_231710 PE...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22050-RA	Carg22050-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..130
None	No IPR available	PANTHER	PTHR33429	FAMILY NOT NAMED	coord: 5..118
None	No IPR available	PANTHER	PTHR33429:SF5	SUBFAMILY NOT NAMED	coord: 5..118

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22050	Cla015992	Watermelon (97103) v1	carwmB0198
Carg22050	Csa7G074850	Cucumber (Chinese Long) v2	carcuB0233
Carg22050	ClCG02G005720	Watermelon (Charleston Gray)	carwcgB0203
Carg22050	CSPI07G07830	Wild cucumber (PI 183967)	carcpiB0239
Carg22050	CmaCh19G006220	Cucurbita maxima (Rimu)	carcmaB0288
Carg22050	CmoCh19G006400	Cucurbita moschata (Rifu)	carcmoB0293
Carg22050	CmoCh11G013450	Cucurbita moschata (Rifu)	carcmoB0292
Carg22050	Cp4.1LG15g05030	Cucurbita pepo (Zucchini)	carcpeB0295
Carg22050	Cp4.1LG04g08150	Cucurbita pepo (Zucchini)	carcpeB0296
Carg22050	CsGy7G007380	Cucumber (Gy14) v2	carcgybB0222
Carg22050	MELO3C028578.2	Melon (DHL92) v3.6.1	carmedB0218
Carg22050	CsaV3_7G008810	Cucumber (Chinese Long) v3	carcucB0237
Carg22050	Cla97C02G032680	Watermelon (97103) v2	carwmbB0212
Carg22050	Bhi05G001011	Wax gourd	carwgoB0260

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22050	Cucumber (Gy14) v1	carcgyB0251
Carg22050	Cucurbita maxima (Rimu)	carcmaB0287
Carg22050	Bottle gourd (USVL1VR-Ls)	carlsiB185
Carg22050	Bottle gourd (USVL1VR-Ls)	carlsiB186
Carg22050	Melon (DHL92) v3.5.1	carmeB0213
Carg22050	Watermelon (97103) v2	carwmbB0211