CmoCh19G006400 (gene) Cucurbita moschata (Rifu)

NameCmoCh19G006400
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTransmembrane protein, putative
LocationCmo_Chr19 : 6934230 .. 6934616 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACTCCCGTCGACCAGCTCCAGCCCCCGCCGACCGCTCATTCCGGCTACGGCTCCGTCGGTCCAGTCATCGCCGTCCTCGCAGTCATTTCCATCCTCGGCGTCATCGCCGGCATTATCGGCCGTCTCTGCTCCGGCCGCCCCGTCTTCGGCTACGGCGCCCACTACGACGTCGAGGAATGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGCTCCCTCGACCCTCCTCCGCCGCCGCCGCCGCATCTCCGCCACCCTCCGCCGCTCGATGCCGTTCCTGTAGTCGAACCCCTTGGTGGGCCGCCGGAAATCAAGCAAGGCGCCGATGACAAACGCGAGAATTTGCAGTCGGCGGCTCCCGGAACCGGCGGTGAGTCGTGA

mRNA sequence

ATGTCCACTCCCGTCGACCAGCTCCAGCCCCCGCCGACCGCTCATTCCGGCTACGGCTCCGTCGGTCCAGTCATCGCCGTCCTCGCAGTCATTTCCATCCTCGGCGTCATCGCCGGCATTATCGGCCGTCTCTGCTCCGGCCGCCCCGTCTTCGGCTACGGCGCCCACTACGACGTCGAGGAATGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGCTCCCTCGACCCTCCTCCGCCGCCGCCGCCGCATCTCCGCCACCCTCCGCCGCTCGATGCCGTTCCTGTAGTCGAACCCCTTGGTGGGCCGCCGGAAATCAAGCAAGGCGCCGATGACAAACGCGAGAATTTGCAGTCGGCGGCTCCCGGAACCGGCGGTGAGTCGTGA

Coding sequence (CDS)

ATGTCCACTCCCGTCGACCAGCTCCAGCCCCCGCCGACCGCTCATTCCGGCTACGGCTCCGTCGGTCCAGTCATCGCCGTCCTCGCAGTCATTTCCATCCTCGGCGTCATCGCCGGCATTATCGGCCGTCTCTGCTCCGGCCGCCCCGTCTTCGGCTACGGCGCCCACTACGACGTCGAGGAATGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGCTCCCTCGACCCTCCTCCGCCGCCGCCGCCGCATCTCCGCCACCCTCCGCCGCTCGATGCCGTTCCTGTAGTCGAACCCCTTGGTGGGCCGCCGGAAATCAAGCAAGGCGCCGATGACAAACGCGAGAATTTGCAGTCGGCGGCTCCCGGAACCGGCGGTGAGTCGTGA
BLAST of CmoCh19G006400 vs. TrEMBL
Match: A0A0A0K6N4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G074850 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 8.7e-54
Identity = 112/133 (84.21%), Postives = 119/133 (89.47%), Query Frame = 1

Query: 1   MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60
           MSTP+DQLQPPP  HS + SVGP+IAVLAVISILGVIAG+IGRLCSGRPVFGYGAHYD+E
Sbjct: 1   MSTPIDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDLE 60

Query: 61  EWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGG-PPEIKQG----ADDKRE 120
           +WVEKKCASCLDGSLD PPPPPPHLRHPPPLD+VPV EPLGG PPEIKQ     AD K E
Sbjct: 61  DWVEKKCASCLDGSLD-PPPPPPHLRHPPPLDSVPVAEPLGGPPPEIKQSAHADADAKGE 120

Query: 121 NLQSAAPGTGGES 129
           NLQSAAPGTGGES
Sbjct: 121 NLQSAAPGTGGES 132

BLAST of CmoCh19G006400 vs. TrEMBL
Match: A0A067KPY1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04879 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 9.0e-27
Identity = 71/131 (54.20%), Postives = 90/131 (68.70%), Query Frame = 1

Query: 1   MSTPVDQLQPPP--------TAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFG 60
           MSTP+DQ QPPP        TAH+G+GSVGP IAVLAVI+ILGV+AG++GRLCSGR + G
Sbjct: 1   MSTPLDQQQPPPMEVTQQVYTAHTGHGSVGPFIAVLAVITILGVLAGMVGRLCSGRRIMG 60

Query: 61  YGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPL--GGPPEIKQGA 120
           +G  YD E WVE+KC+SCLDG +DPPP PP           +PV EPL   GP EIK+  
Sbjct: 61  HG-QYDFEGWVERKCSSCLDGRVDPPPAPPAD---------IPVAEPLEETGPQEIKEEE 120

Query: 121 DDKRENLQSAA 122
            ++ ++   A+
Sbjct: 121 QEQSKHKSHAS 121

BLAST of CmoCh19G006400 vs. TrEMBL
Match: A0A061E7I4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_007002 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.9e-25
Identity = 66/107 (61.68%), Postives = 79/107 (73.83%), Query Frame = 1

Query: 1   MSTPVDQLQPPP--------TAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFG 60
           MSTP++Q QPPP        TAH+G+GSVGPVIAVLAVI+ILGVIAG+IGRLCSGRP+ G
Sbjct: 11  MSTPLEQQQPPPVGVSQQAYTAHTGHGSVGPVIAVLAVITILGVIAGMIGRLCSGRPIMG 70

Query: 61  YGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEP 100
           +G  YD E WVE+KC+SCLDG ++PPP        P P + VPV  P
Sbjct: 71  HG-QYDFEGWVERKCSSCLDGRVNPPP--------PRPTEEVPVAVP 108

BLAST of CmoCh19G006400 vs. TrEMBL
Match: A5BS04_VITVI (Peroxidase OS=Vitis vinifera GN=VITISV_035943 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.5e-25
Identity = 70/119 (58.82%), Postives = 83/119 (69.75%), Query Frame = 1

Query: 1   MSTPVDQLQP---PP--------TAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRP 60
           MSTP+D LQ    PP        TAHSG+GSVGPVIAVLAVI+ILGVIAG+IGRLCSGR 
Sbjct: 810 MSTPIDPLQQQQSPPGGLTQQAYTAHSGHGSVGPVIAVLAVITILGVIAGMIGRLCSGRR 869

Query: 61  VFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQ 109
           + G+G  YDVE WVE+KC+SC+DG +DPPP PPP      P ++ P  +      EIKQ
Sbjct: 870 IMGHG-QYDVEGWVERKCSSCIDGRVDPPPRPPPAPTSYSPGESAPPADSSETAQEIKQ 927

BLAST of CmoCh19G006400 vs. TrEMBL
Match: A0A0D2VAC4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G040900 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.7e-23
Identity = 59/91 (64.84%), Postives = 73/91 (80.22%), Query Frame = 1

Query: 1   MSTPVDQLQPPP--------TAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFG 60
           MSTP++Q QPP         TAH+G+GSVGPVIAV+AVI+ILG+IAG+IGRLCSGRP+ G
Sbjct: 44  MSTPLEQQQPPLVGTTQEAYTAHTGHGSVGPVIAVVAVITILGIIAGMIGRLCSGRPIMG 103

Query: 61  YGAHYDVEEWVEKKCASCLDGSLDPPPPPPP 84
           +G HYD E WVE+KC+SCLDG++  PPP  P
Sbjct: 104 HG-HYDFEGWVERKCSSCLDGTVVDPPPSRP 133

BLAST of CmoCh19G006400 vs. TAIR10
Match: AT2G26520.1 (AT2G26520.1 unknown protein)

HSP 1 Score: 74.3 bits (181), Expect = 6.0e-14
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 1

Query: 9  QPPPTAH----------SGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYD 68
          QPPP             +G  ++GP IAV  V+++L V+A +IGRLCSG+ + GYG  YD
Sbjct: 9  QPPPATEVSQDSSSVSSAGNSTIGPFIAVFIVVTVLCVLASVIGRLCSGKTILGYG-DYD 68

Query: 69 VEEWVEKKCASCLDGSLDPPPPPPPHLRHPPP 91
          +E W E +C SC+DG + P  P P     PPP
Sbjct: 69 MERWAESRCGSCIDGHIHPHRPSPSPT--PPP 97

BLAST of CmoCh19G006400 vs. TAIR10
Match: AT3G57500.1 (AT3G57500.1 unknown protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-13
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1

Query: 9   QPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCA 68
           Q  P+ +S + S+  ++ VLAVI+IL V+AG+  RLC GR +  +G  +D+E WVE+KC 
Sbjct: 26  QDQPSHNSDHRSIETLVVVLAVITILSVLAGVFARLCGGRHL-SHGGDHDIEGWVERKCR 85

Query: 69  SCLDGSL-------DPPPPPPP 84
           SC+D  +        PPPPPPP
Sbjct: 86  SCIDAGIPAVSAAPSPPPPPPP 106

BLAST of CmoCh19G006400 vs. NCBI nr
Match: gi|659110987|ref|XP_008455516.1| (PREDICTED: putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 [Cucumis melo])

HSP 1 Score: 223.0 bits (567), Expect = 3.0e-55
Identity = 115/134 (85.82%), Postives = 121/134 (90.30%), Query Frame = 1

Query: 1   MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60
           MSTP+DQLQPPP  HS + SVGP+IAVLAVISILGVIAG+IGRLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPIDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE 60

Query: 61  EWVEKKCASCLDGSLD---PPPPPPPHLRHPPPLDAVPVVEPLGG-PPEIKQG--ADDKR 120
           +WVEKKCASCLDGSLD   PPPPPPPHLRHPPPLD+VPV EPLGG PPEIKQG  AD K 
Sbjct: 61  DWVEKKCASCLDGSLDPPPPPPPPPPHLRHPPPLDSVPVAEPLGGPPPEIKQGADADAKG 120

Query: 121 ENLQSAAPGTGGES 129
           ENLQSAAPGTGGES
Sbjct: 121 ENLQSAAPGTGGES 134

BLAST of CmoCh19G006400 vs. NCBI nr
Match: gi|700188719|gb|KGN43952.1| (hypothetical protein Csa_7G074850 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-53
Identity = 112/133 (84.21%), Postives = 119/133 (89.47%), Query Frame = 1

Query: 1   MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60
           MSTP+DQLQPPP  HS + SVGP+IAVLAVISILGVIAG+IGRLCSGRPVFGYGAHYD+E
Sbjct: 1   MSTPIDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDLE 60

Query: 61  EWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGG-PPEIKQG----ADDKRE 120
           +WVEKKCASCLDGSLD PPPPPPHLRHPPPLD+VPV EPLGG PPEIKQ     AD K E
Sbjct: 61  DWVEKKCASCLDGSLD-PPPPPPHLRHPPPLDSVPVAEPLGGPPPEIKQSAHADADAKGE 120

Query: 121 NLQSAAPGTGGES 129
           NLQSAAPGTGGES
Sbjct: 121 NLQSAAPGTGGES 132

BLAST of CmoCh19G006400 vs. NCBI nr
Match: gi|802598804|ref|XP_012072449.1| (PREDICTED: uncharacterized protein LOC105634230 [Jatropha curcas])

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-26
Identity = 71/131 (54.20%), Postives = 90/131 (68.70%), Query Frame = 1

Query: 1   MSTPVDQLQPPP--------TAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFG 60
           MSTP+DQ QPPP        TAH+G+GSVGP IAVLAVI+ILGV+AG++GRLCSGR + G
Sbjct: 1   MSTPLDQQQPPPMEVTQQVYTAHTGHGSVGPFIAVLAVITILGVLAGMVGRLCSGRRIMG 60

Query: 61  YGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPL--GGPPEIKQGA 120
           +G  YD E WVE+KC+SCLDG +DPPP PP           +PV EPL   GP EIK+  
Sbjct: 61  HG-QYDFEGWVERKCSSCLDGRVDPPPAPPAD---------IPVAEPLEETGPQEIKEEE 120

Query: 121 DDKRENLQSAA 122
            ++ ++   A+
Sbjct: 121 QEQSKHKSHAS 121

BLAST of CmoCh19G006400 vs. NCBI nr
Match: gi|1009115432|ref|XP_015874226.1| (PREDICTED: transcription factor RBF1-like [Ziziphus jujuba])

HSP 1 Score: 125.6 bits (314), Expect = 6.4e-26
Identity = 72/128 (56.25%), Postives = 90/128 (70.31%), Query Frame = 1

Query: 2   STPVDQLQPPP--------TAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGY 61
           +TP+DQ +PPP        T HSG+GSVGPVIAVLAVI+ILGVIAG+IGRLCSGRP+ G+
Sbjct: 3   TTPIDQ-EPPPMAMTQQAYTTHSGHGSVGPVIAVLAVITILGVIAGMIGRLCSGRPIMGH 62

Query: 62  GAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDA---VPVVEPLGGPPEIKQGA 119
           G  YD E WVE+KC++CLDG +DPPPPPP     PP   +   VPV  P+    EIK+  
Sbjct: 63  G-QYDFEAWVERKCSTCLDGRVDPPPPPP----RPPANTSGGEVPVAMPVEIQQEIKEEE 122

BLAST of CmoCh19G006400 vs. NCBI nr
Match: gi|764548062|ref|XP_011459753.1| (PREDICTED: uncharacterized protein LOC105350079 [Fragaria vesca subsp. vesca])

HSP 1 Score: 124.0 bits (310), Expect = 1.9e-25
Identity = 62/107 (57.94%), Postives = 78/107 (72.90%), Query Frame = 1

Query: 5   VDQLQPPP------------TAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFG 64
           ++QLQPPP            T HSG+GSVGP+IAVLAVI++LGVIAG+IGRLCSGR + G
Sbjct: 1   MEQLQPPPPPAPVYATQQAYTTHSGHGSVGPLIAVLAVITVLGVIAGMIGRLCSGRRIMG 60

Query: 65  YGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEP 100
           +G HYD E W+EKKC+SC+DG +  PPPPPPH+     ++ VP  EP
Sbjct: 61  HGQHYDFEAWLEKKCSSCIDGRI-APPPPPPHIPATASVEEVPAAEP 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K6N4_CUCSA8.7e-5484.21Uncharacterized protein OS=Cucumis sativus GN=Csa_7G074850 PE=4 SV=1[more]
A0A067KPY1_JATCU9.0e-2754.20Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04879 PE=4 SV=1[more]
A0A061E7I4_THECC2.9e-2561.68Uncharacterized protein OS=Theobroma cacao GN=TCM_007002 PE=4 SV=1[more]
A5BS04_VITVI6.5e-2558.82Peroxidase OS=Vitis vinifera GN=VITISV_035943 PE=3 SV=1[more]
A0A0D2VAC4_GOSRA2.7e-2364.84Uncharacterized protein OS=Gossypium raimondii GN=B456_013G040900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G26520.16.0e-1443.48 unknown protein[more]
AT3G57500.11.0e-1345.12 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659110987|ref|XP_008455516.1|3.0e-5585.82PREDICTED: putative bifunctional UDP-N-acetylglucosamine transferase and deubiqu... [more]
gi|700188719|gb|KGN43952.1|1.2e-5384.21hypothetical protein Csa_7G074850 [Cucumis sativus][more]
gi|802598804|ref|XP_012072449.1|1.3e-2654.20PREDICTED: uncharacterized protein LOC105634230 [Jatropha curcas][more]
gi|1009115432|ref|XP_015874226.1|6.4e-2656.25PREDICTED: transcription factor RBF1-like [Ziziphus jujuba][more]
gi|764548062|ref|XP_011459753.1|1.9e-2557.94PREDICTED: uncharacterized protein LOC105350079 [Fragaria vesca subsp. vesca][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0000723 telomere maintenance
biological_process GO:0044710 single-organism metabolic process
biological_process GO:1902589 single-organism organelle organization
biological_process GO:0008150 biological_process
cellular_component GO:0005815 microtubule organizing center
cellular_component GO:0000922 spindle pole
cellular_component GO:0044430 cytoskeletal part
cellular_component GO:0015630 microtubule cytoskeleton
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G006400.1CmoCh19G006400.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33429FAMILY NOT NAMEDcoord: 1..108
score: 1.2
NoneNo IPR availablePANTHERPTHR33429:SF5SUBFAMILY NOT NAMEDcoord: 1..108
score: 1.2

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh19G006400CmoCh11G013450Cucurbita moschata (Rifu)cmocmoB110