CsaV3_7G007760 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G007760
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	cysteine-rich and transmembrane domain-containing protein A-like
Location	chr7 : 4829773 .. 4831338 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAGAAAAATAATATAATATGGATAAATAATAATAAACTCAAATTTAAAATGAATATAAAAAGACATAAAAAAGTCCGCATTCTTTATTCCTTTTTTTTGGTTGTCTTCCTCTTCATAGTTTATAGAGCTCTCTCGTCTCTCCGTTTTCCAAACTAAGAAAATCAAAACAGAAGAAAGTATGACTAGTTACTACGCACAGCCACCGCCTCCCGTCGGCGTTCCTCCCCCCCAGGGTAACCTCTACAAACCCTCACTCTTCACTTTTTTTCCATTTCTTAGACGATCCATATCATATCCCAAGGATCTTACTGTTTTTTCCCCCCTAAAACTCATCTGCTACTTGTTTTCATCTCCTTTACGCGCTTTTATTTGACCGATCTTGACGATTTTAATTAGGTTATCCACCGCAAGGATATCCTCCGAAGGACGCTTATCCCCCGCAAGGATATCCACCGCAGGGCGGTTATCCACCTGCCGGTTATCCTCCGCAGGGATACCCGCCTCCGCCGCCGTATGGTCCGGCGTACGGTCATCATCCTCCTCCGCAACATCAAAACCAAAAGAAAGAAGTTGGATTCGTCGAAGGCTGGTAAGTCGTCTCTGCTTCTGTTTTAACGTACGTCAACTCTTACGTAGTGGATTTCGCGGCGGCGAAGTACGGATACGGTGAGGAAATGAGGTGATTGGATGGATTTGGTCTAGGAATTTTTGTTTTGTTGTTGAGGAATGTGGAAGCGATCGAAATCGGTAATGGGCTGACACAGGGTGGAAAGTTCTTTTCTCACATGAACATTACCGCAATTTTTGGGTCTTCTTTCCACCTTTTCTTCTTTTTCTATAAAATATACTTTTCTTATTCAAAACATTATTTTTAAAATACTAAAATCATCCCAAATATTTTTCTATAAAACGTAAATATTCGTTTGTTGTTTATATTATATTCACGTAGGTATAAAAATATCATTGAAAAAGAAATTATATCGATGGAAATTTAGTTTCATTTATTACTCTATTTTACGTTTCTAGCCAATAGTTTTTAGGAATTGATGTATTTTGTACCTAAAGTTCTAATTTCATAACAATTTTAATAGTTAGTTAGGATGTTGCATTGGAGAATAATAACTTGAAAGGGTAAAAAAAACTATTTTTCCAAAAACAAAATTAGGTATGATCACAAATTTCACTTTCCCTCCCAATTTTGATAATTACTACATAGTTTGATGTTATATTATGATGATGATGATGATGATAAAGAAGATCTGAATTTGGGTTTGTAAATTTTGCAGTTTGGCTGCGCTTTGTTGCTGCTTTATGTTGGATGTTTGCTTTTGATTGATGAACACAATGTATAAGGAGGGAGGGGTTGCTTTTTGATTGATGAAATTGCCTACACAATTTGAACTTAAATCTTCATCATCTTCATTTTTCTTTCTTTGTCAGTGTGTAATATCCAATCCATTGTTTCTATATCCTCATTTGTAACTTATTATTGCTTTCGCCAAAACAATATGTTATACATTTTTAACATTTAATTATTAATTCTCTCTATTTTTGTTTTGGATTG

mRNA sequence

ATGACTAGTTACTACGCACAGCCACCGCCTCCCGTCGGCGTTCCTCCCCCCCAGGGTTATCCACCGCAAGGATATCCTCCGAAGGACGCTTATCCCCCGCAAGGATATCCACCGCAGGGCGGTTATCCACCTGCCGGTTATCCTCCGCAGGGATACCCGCCTCCGCCGCCGTATGGTCCGGCGTACGGTCATCATCCTCCTCCGCAACATCAAAACCAAAAGAAAGAAGTTGGATTCGTCGAAGGCTGTTTGGCTGCGCTTTGTTGCTGCTTTATGTTGGATGTTTGCTTTTGA

Coding sequence (CDS)

ATGACTAGTTACTACGCACAGCCACCGCCTCCCGTCGGCGTTCCTCCCCCCCAGGGTTATCCACCGCAAGGATATCCTCCGAAGGACGCTTATCCCCCGCAAGGATATCCACCGCAGGGCGGTTATCCACCTGCCGGTTATCCTCCGCAGGGATACCCGCCTCCGCCGCCGTATGGTCCGGCGTACGGTCATCATCCTCCTCCGCAACATCAAAACCAAAAGAAAGAAGTTGGATTCGTCGAAGGCTGTTTGGCTGCGCTTTGTTGCTGCTTTATGTTGGATGTTTGCTTTTGA

Protein sequence

MTSYYAQPPPPVGVPPPQGYPPQGYPPKDAYPPQGYPPQGGYPPAGYPPQGYPPPPPYGPAYGHHPPPQHQNQKKEVGFVEGCLAALCCCFMLDVCF

Homology

[Close]

BLAST of CsaV3_7G007760 vs. NCBI nr
Match: XP_011658867.1 (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cucumis sativus] >KGN43843.1 hypothetical protein Csa_7G070830 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-12
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MTSYYAQPPPPVGVPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MTSYYAQPPPPVGVPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MTSYYAQPPPPVGVPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXHQNQKKEVGFVEGCLAALCCCFMLDVCF 98
          XXXXXXXXXHQNQKKEVGFVEGCLAALCCCFMLDVCF
Sbjct: 61 XXXXXXXXXHQNQKKEVGFVEGCLAALCCCFMLDVCF 97

[Close]

BLAST of CsaV3_7G007760 vs. NCBI nr
Match: XP_008455047.1 (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 5.6e-10
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MTSYYAQPPPPVGVPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          M+SYYAQPPPPVGVPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MSSYYAQPPPPVGVPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXHQ-NQKKEVGFVEGCLAALCCCFMLDVCF 98
          XX XXXXX +Q NQKKEVGFVEGCLAALCCCFMLDVCF
Sbjct: 61 XXGXXXXXQYQNNQKKEVGFVEGCLAALCCCFMLDVCF 98

[Close]

BLAST of CsaV3_7G007760 vs. NCBI nr
Match: XP_022952198.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita moschata])

HSP 1 Score: 63.9 bits (154), Expect = 3.4e-07
Identity = 88/95 (92.63%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 3  SYYAQPPPPVGVPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 62
          SYY QPPPPVGVPPP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 2  SYYNQPPPPVGVPPP--QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 61

Query: 63 XXXXXXXHQNQKKEVGFVEGCLAALCCCFMLDVCF 98
          XXXXXXX  NQKKEVGFVEGCLAALCCCF+LDVCF
Sbjct: 62 XXXXXXXXSNQKKEVGFVEGCLAALCCCFVLDVCF 94

[Close]

BLAST of CsaV3_7G007760 vs. NCBI nr
Match: XP_023553865.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.9 bits (154), Expect = 3.4e-07
Identity = 88/95 (92.63%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 3  SYYAQPPPPVGVPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 62
          SYY QPPPPVGVPPP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 2  SYYNQPPPPVGVPPP--QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 61

Query: 63 XXXXXXXHQNQKKEVGFVEGCLAALCCCFMLDVCF 98
          XXXXXXX  NQKKEVGFVEGCLAALCCCF+LDVCF
Sbjct: 62 XXXXXXXXSNQKKEVGFVEGCLAALCCCFVLDVCF 94

[Close]

BLAST of CsaV3_7G007760 vs. NCBI nr
Match: XP_022972438.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita maxima])

HSP 1 Score: 63.5 bits (153), Expect = 4.5e-07
Identity = 84/95 (88.42%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 3  SYYAQPPPPVGVPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 62
          SYY QPPPPVGVPPP       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 2  SYYNQPPPPVGVPPP------QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 61

Query: 63 XXXXXXXHQNQKKEVGFVEGCLAALCCCFMLDVCF 98
          XXXXXXX  NQKKEVGFVEGCLAALCCCF+LDVCF
Sbjct: 62 XXXXXXXXXNQKKEVGFVEGCLAALCCCFVLDVCF 90

[Close]

BLAST of CsaV3_7G007760 vs. TAIR10
Match: AT2G32190.1 (unknown protein)

HSP 1 Score: 41.6 bits (96), Expect = 3.3e-04
Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 0


Query: 71 QNQKKEVGFVEGCLAALCCCFMLDVCF 98
          + + K  GF++GCLAA+CCC +LD CF
Sbjct: 45 ETKSKGDGFLKGCLAAMCCCCVLDACF 71

[Close]

BLAST of CsaV3_7G007760 vs. TAIR10
Match: AT2G32210.1 (unknown protein)

HSP 1 Score: 41.6 bits (96), Expect = 3.3e-04
Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 0


Query: 71 QNQKKEVGFVEGCLAALCCCFMLDVCF 98
          + + K  GF++GCLAA+CCC +LD CF
Sbjct: 45 ETKSKGDGFLKGCLAAMCCCCVLDACF 71

[Close]

BLAST of CsaV3_7G007760 vs. TAIR10
Match: AT3G49845.1 (unknown protein)

HSP 1 Score: 41.6 bits (96), Expect = 3.3e-04
Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 0


Query: 71  QNQKKEVGFVEGCLAALCCCFMLDVCF 98
           +++K   GF+EGCLA LCCC +L+ CF
Sbjct: 98  KDKKDSGGFMEGCLAMLCCCVLLEACF 124

[Close]

BLAST of CsaV3_7G007760 vs. TAIR10
Match: AT5G04080.1 (unknown protein)

HSP 1 Score: 41.6 bits (96), Expect = 3.3e-04
Identity = 15/25 (60.00%), Postives = 21/25 (84.00%), Query Frame = 0


Query: 73 QKKEVGFVEGCLAALCCCFMLDVCF 98
          QK + GF+EGCL ALCCC++ ++CF
Sbjct: 39 QKGDRGFIEGCLFALCCCWICEMCF 63

[Close]

BLAST of CsaV3_7G007760 vs. TAIR10
Match: AT1G05340.1 (unknown protein)

HSP 1 Score: 41.2 bits (95), Expect = 4.3e-04
Identity = 15/27 (55.56%), Postives = 20/27 (74.07%), Query Frame = 0


Query: 71 QNQKKEVGFVEGCLAALCCCFMLDVCF 98
          + + K  GF +GCLAA+CCC  LD+CF
Sbjct: 46 ETKSKGDGFFKGCLAAMCCCCALDICF 72

[Close]

BLAST of CsaV3_7G007760 vs. TrEMBL
Match: tr|A0A0A0K2W8|A0A0A0K2W8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070830 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-12
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MTSYYAQPPPPVGVPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MTSYYAQPPPPVGVPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MTSYYAQPPPPVGVPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXHQNQKKEVGFVEGCLAALCCCFMLDVCF 98
          XXXXXXXXXHQNQKKEVGFVEGCLAALCCCFMLDVCF
Sbjct: 61 XXXXXXXXXHQNQKKEVGFVEGCLAALCCCFMLDVCF 97

[Close]

BLAST of CsaV3_7G007760 vs. TrEMBL
Match: tr|A0A1S3BZZ2|A0A1S3BZZ2_CUCME (cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo OX=3656 GN=LOC103495315 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.7e-10
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MTSYYAQPPPPVGVPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          M+SYYAQPPPPVGVPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MSSYYAQPPPPVGVPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXHQ-NQKKEVGFVEGCLAALCCCFMLDVCF 98
          XX XXXXX +Q NQKKEVGFVEGCLAALCCCFMLDVCF
Sbjct: 61 XXGXXXXXQYQNNQKKEVGFVEGCLAALCCCFMLDVCF 98

The following BLAST results are available for this feature:

BLAST of CsaV3_7G007760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658867.1	1.6e-12	100.00	PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cuc...	[more]
XP_008455047.1	5.6e-10	94.90	PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cuc...	[more]
XP_022952198.1	3.4e-07	92.63	cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita m...	[more]
XP_023553865.1	3.4e-07	92.63	cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita p...	[more]
XP_022972438.1	4.5e-07	88.42	cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita m...	[more]

BLAST of CsaV3_7G007760 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32190.1	3.3e-04	55.56	unknown protein	[more]
AT2G32210.1	3.3e-04	55.56	unknown protein	[more]
AT3G49845.1	3.3e-04	55.56	unknown protein	[more]
AT5G04080.1	3.3e-04	60.00	unknown protein	[more]
AT1G05340.1	4.3e-04	55.56	unknown protein	[more]

BLAST of CsaV3_7G007760 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G007760 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K2W8\|A0A0A0K2W8_CUCSA	1.0e-12	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070830 PE=4 SV=1	[more]
tr\|A0A1S3BZZ2\|A0A1S3BZZ2_CUCME	3.7e-10	94.90	cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G007760.1	CsaV3_7G007760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00239	RHODOPSNTAIL	coord: 16..27 score: 94.44 coord: 41..53 score: 39.74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..64
None	No IPR available	PANTHER	PTHR31568	FAMILY NOT NAMED	coord: 3..97
None	No IPR available	PANTHER	PTHR31568:SF3	CYSTEINE-RICH AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN A-RELATED	coord: 3..97

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G007760	CSPI07G06790	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G007760	Cucsa.219080	Cucumber (Gy14) v1	cgycucB342
CsaV3_7G007760	CmaCh11G016960	Cucurbita maxima (Rimu)	cmacucB0171
CsaV3_7G007760	CmoCh11G014230	Cucurbita moschata (Rifu)	cmocucB0160
CsaV3_7G007760	Cp4.1LG04g07560	Cucurbita pepo (Zucchini)	cpecucB0868
CsaV3_7G007760	Cp4.1LG15g04340	Cucurbita pepo (Zucchini)	cpecucB0323
CsaV3_7G007760	CsGy7G006310	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G007760	Carg16322	Silver-seed gourd	carcucB0490
CsaV3_7G007760	Carg23041	Silver-seed gourd	carcucB0770
CsaV3_7G007760	Cla001610	Watermelon (97103) v1	cucwmB635
CsaV3_7G007760	MELO3C018526	Melon (DHL92) v3.5.1	cucmeB548
CsaV3_7G007760	Lsi03G005930	Bottle gourd (USVL1VR-Ls)	cuclsiB555
CsaV3_7G007760	MELO3C028581.2	Melon (DHL92) v3.6.1	cucmedB536

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G007760	Cucumber (Chinese Long) v3	cuccucB100
CsaV3_7G007760	Cucumber (Chinese Long) v3	cuccucB188
CsaV3_7G007760	Silver-seed gourd	carcucB0329
CsaV3_7G007760	Cucumber (Gy14) v2	cgybcucB198
CsaV3_7G007760	Cucumber (Gy14) v1	cgycucB540
CsaV3_7G007760	Cucurbita maxima (Rimu)	cmacucB0057
CsaV3_7G007760	Cucurbita maxima (Rimu)	cmacucB0232
CsaV3_7G007760	Cucurbita maxima (Rimu)	cmacucB0414
CsaV3_7G007760	Cucurbita maxima (Rimu)	cmacucB0589
CsaV3_7G007760	Cucurbita maxima (Rimu)	cmacucB0639
CsaV3_7G007760	Cucurbita maxima (Rimu)	cmacucB0918
CsaV3_7G007760	Cucurbita maxima (Rimu)	cmacucB0959
CsaV3_7G007760	Cucurbita moschata (Rifu)	cmocucB0409
CsaV3_7G007760	Cucurbita moschata (Rifu)	cmocucB0623
CsaV3_7G007760	Cucurbita moschata (Rifu)	cmocucB0910
CsaV3_7G007760	Cucurbita moschata (Rifu)	cmocucB0949
CsaV3_7G007760	Cucurbita pepo (Zucchini)	cpecucB0141
CsaV3_7G007760	Cucurbita pepo (Zucchini)	cpecucB0582
CsaV3_7G007760	Cucurbita pepo (Zucchini)	cpecucB0736
CsaV3_7G007760	Cucurbita pepo (Zucchini)	cpecucB0995
CsaV3_7G007760	Wild cucumber (PI 183967)	cpicucB123
CsaV3_7G007760	Wild cucumber (PI 183967)	cpicucB248
CsaV3_7G007760	Bottle gourd (USVL1VR-Ls)	cuclsiB554
CsaV3_7G007760	Bottle gourd (USVL1VR-Ls)	cuclsiB573
CsaV3_7G007760	Melon (DHL92) v3.5.1	cucmeB581
CsaV3_7G007760	Melon (DHL92) v3.5.1	cucmeB569
CsaV3_7G007760	Melon (DHL92) v3.5.1	cucmeB585
CsaV3_7G007760	Melon (DHL92) v3.6.1	cucmedB555
CsaV3_7G007760	Melon (DHL92) v3.6.1	cucmedB572
CsaV3_7G007760	Watermelon (Charleston Gray)	cucwcgB556
CsaV3_7G007760	Watermelon (Charleston Gray)	cucwcgB572
CsaV3_7G007760	Watermelon (Charleston Gray)	cucwcgB601
CsaV3_7G007760	Watermelon (97103) v1	cucwmB602
CsaV3_7G007760	Watermelon (97103) v1	cucwmB607
CsaV3_7G007760	Watermelon (97103) v2	cucwmbB537
CsaV3_7G007760	Watermelon (97103) v2	cucwmbB550
CsaV3_7G007760	Watermelon (97103) v2	cucwmbB577
CsaV3_7G007760	Wax gourd	cucwgoB674
CsaV3_7G007760	Wax gourd	cucwgoB686
CsaV3_7G007760	Wax gourd	cucwgoB702