MELO3C028581.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C028581.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptioncysteine-rich and transmembrane domain-containing protein A-like
Locationchr01 : 894865 .. 895357 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAAAAAGTCCGCATTCTTTATTCTTTGATTGTCTTTATAGTTTATAGAGCTCTCGTCTCTGTGTGTTTCCAACTAAGAAAATCAAAACAGAAGAAAGAAAATATGAGTAGTTACTACGCCCAACCACCGCCTCCCGTCGGCGTTCCTCCCCCGCAGGGTAACGTCTAAAAACCCTCACTCTTCACTTTTTTCCAATTCTTAGATCCAAATCCCATGGATCGTACTGTTCTTTTTTTCCGCAAAACTCATCTGCTAGCTAGTTGTTTGATTTGACCGATCTTGACGATTTTAGGTTATCCGCCGCAAGGATATCCTCCGAAGGACGCTTATCCGCCACAAGGATATCCACCGCAGGGTGGTTATCCACCTGCCGGTTATCCTCCGCAGGGATACCCGCCTCAGCCGCCGTATGGTCCGGCGTACGGTGGTCATCCTCCTCCGCAATATCAAAATAACCAAAAGAAAGAAGTTGGATTCGTCGAAGGGTGGTAA

mRNA sequence

TAAAAAAGTCCGCATTCTTTATTCTTTGATTGTCTTTATAGTTTATAGAGCTCTCGTCTCTGTGTGTTTCCAACTAAGAAAATCAAAACAGAAGAAAGAAAATATGAGTAGTTACTACGCCCAACCACCGCCTCCCGTCGGCGTTCCTCCCCCGCAGGGTTATCCGCCGCAAGGATATCCTCCGAAGGACGCTTATCCGCCACAAGGATATCCACCGCAGGGTGGTTATCCACCTGCCGGTTATCCTCCGCAGGGATACCCGCCTCAGCCGCCGTATGGTCCGGCGTACGGTGGTCATCCTCCTCCGCAATATCAAAATAACCAAAAGAAAGAAGTTGGATTCGTCGAAGGGTGGTAA

Coding sequence (CDS)

ATGAGTAGTTACTACGCCCAACCACCGCCTCCCGTCGGCGTTCCTCCCCCGCAGGGTTATCCGCCGCAAGGATATCCTCCGAAGGACGCTTATCCGCCACAAGGATATCCACCGCAGGGTGGTTATCCACCTGCCGGTTATCCTCCGCAGGGATACCCGCCTCAGCCGCCGTATGGTCCGGCGTACGGTGGTCATCCTCCTCCGCAATATCAAAATAACCAAAAGAAAGAAGTTGGATTCGTCGAAGGGTGGTAA

Protein sequence

MSSYYAQPPPPVGVPPPQGYPPQGYPPKDAYPPQGYPPQGGYPPAGYPPQGYPPQPPYGPAYGGHPPPQYQNNQKKEVGFVEGW
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028581.2.1MELO3C028581.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00239RHODOPSNTAILcoord: 16..27
score: 94.44
coord: 41..53
score: 39.74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..64
NoneNo IPR availablePANTHERPTHR31568:SF3CYSTEINE-RICH AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN A-RELATEDcoord: 3..84
NoneNo IPR availablePANTHERPTHR31568FAMILY NOT NAMEDcoord: 3..84

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C028581.2CsaV3_7G007760Cucumber (Chinese Long) v3cucmedB536
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C028581.2Cucumber (Gy14) v2cgybmedB465
MELO3C028581.2Cucumber (Gy14) v1cgymedB377
MELO3C028581.2Cucurbita maxima (Rimu)cmamedB106
MELO3C028581.2Cucurbita maxima (Rimu)cmamedB331
MELO3C028581.2Cucurbita maxima (Rimu)cmamedB535
MELO3C028581.2Cucurbita maxima (Rimu)cmamedB754
MELO3C028581.2Cucurbita maxima (Rimu)cmamedB809
MELO3C028581.2Cucurbita moschata (Rifu)cmomedB091
MELO3C028581.2Cucurbita moschata (Rifu)cmomedB317
MELO3C028581.2Cucurbita moschata (Rifu)cmomedB523
MELO3C028581.2Cucurbita moschata (Rifu)cmomedB751
MELO3C028581.2Cucurbita pepo (Zucchini)cpemedB103
MELO3C028581.2Cucurbita pepo (Zucchini)cpemedB220
MELO3C028581.2Cucurbita pepo (Zucchini)cpemedB263
MELO3C028581.2Cucurbita pepo (Zucchini)cpemedB457
MELO3C028581.2Cucurbita pepo (Zucchini)cpemedB715
MELO3C028581.2Wild cucumber (PI 183967)cpimedB523
MELO3C028581.2Cucumber (Chinese Long) v2cumedB509
MELO3C028581.2Melon (DHL92) v3.6.1medmedB080
MELO3C028581.2Melon (DHL92) v3.6.1medmedB094
MELO3C028581.2Bottle gourd (USVL1VR-Ls)lsimedB260
MELO3C028581.2Bottle gourd (USVL1VR-Ls)lsimedB265
MELO3C028581.2Watermelon (Charleston Gray)medwcgB184
MELO3C028581.2Watermelon (Charleston Gray)medwcgB192
MELO3C028581.2Watermelon (97103) v1medwmB214
MELO3C028581.2Watermelon (97103) v1medwmB232
MELO3C028581.2Silver-seed gourdcarmedB0189
MELO3C028581.2Silver-seed gourdcarmedB0306
MELO3C028581.2Silver-seed gourdcarmedB0463
MELO3C028581.2Silver-seed gourdcarmedB0737
MELO3C028581.2Cucumber (Chinese Long) v3cucmedB101
MELO3C028581.2Cucumber (Chinese Long) v3cucmedB269
MELO3C028581.2Cucumber (Chinese Long) v3cucmedB275
MELO3C028581.2Watermelon (97103) v2medwmbB160
MELO3C028581.2Watermelon (97103) v2medwmbB166
MELO3C028581.2Watermelon (97103) v2medwmbB190
MELO3C028581.2Wax gourdmedwgoB200
MELO3C028581.2Wax gourdmedwgoB225
MELO3C028581.2Wax gourdmedwgoB228