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| Name | MELO3C028581.2.1 |
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| Type | mRNA |
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| Organism | Cucumis melo (Melon (DHL92) v3.6.1) |
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| Description | cysteine-rich and transmembrane domain-containing protein A-like |
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| Location | chr01 : 894865 .. 895357 (-) |
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| Sequence length | 358 |
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The following sequences are available for this feature:
Gene sequence (with intron) Legend: five_prime_UTRexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. TAAAAAAGTCCGCATTCTTTATTCTTTGATTGTCTTTATAGTTTATAGAGCTCTCGTCTCTGTGTGTTTCCAACTAAGAAAATCAAAACAGAAGAAAGAAAATATGAGTAGTTACTACGCCCAACCACCGCCTCCCGTCGGCGTTCCTCCCCCGCAGGGTAACGTCTAAAAACCCTCACTCTTCACTTTTTTCCAATTCTTAGATCCAAATCCCATGGATCGTACTGTTCTTTTTTTCCGCAAAACTCATCTGCTAGCTAGTTGTTTGATTTGACCGATCTTGACGATTTTAGGTTATCCGCCGCAAGGATATCCTCCGAAGGACGCTTATCCGCCACAAGGATATCCACCGCAGGGTGGTTATCCACCTGCCGGTTATCCTCCGCAGGGATACCCGCCTCAGCCGCCGTATGGTCCGGCGTACGGTGGTCATCCTCCTCCGCAATATCAAAATAACCAAAAGAAAGAAGTTGGATTCGTCGAAGGGTGGTAA mRNA sequence TAAAAAAGTCCGCATTCTTTATTCTTTGATTGTCTTTATAGTTTATAGAGCTCTCGTCTCTGTGTGTTTCCAACTAAGAAAATCAAAACAGAAGAAAGAAAATATGAGTAGTTACTACGCCCAACCACCGCCTCCCGTCGGCGTTCCTCCCCCGCAGGGTTATCCGCCGCAAGGATATCCTCCGAAGGACGCTTATCCGCCACAAGGATATCCACCGCAGGGTGGTTATCCACCTGCCGGTTATCCTCCGCAGGGATACCCGCCTCAGCCGCCGTATGGTCCGGCGTACGGTGGTCATCCTCCTCCGCAATATCAAAATAACCAAAAGAAAGAAGTTGGATTCGTCGAAGGGTGGTAA Coding sequence (CDS) ATGAGTAGTTACTACGCCCAACCACCGCCTCCCGTCGGCGTTCCTCCCCCGCAGGGTTATCCGCCGCAAGGATATCCTCCGAAGGACGCTTATCCGCCACAAGGATATCCACCGCAGGGTGGTTATCCACCTGCCGGTTATCCTCCGCAGGGATACCCGCCTCAGCCGCCGTATGGTCCGGCGTACGGTGGTCATCCTCCTCCGCAATATCAAAATAACCAAAAGAAAGAAGTTGGATTCGTCGAAGGGTGGTAA Protein sequence MSSYYAQPPPPVGVPPPQGYPPQGYPPKDAYPPQGYPPQGGYPPAGYPPQGYPPQPPYGPAYGGHPPPQYQNNQKKEVGFVEGW
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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GO Assignments
This mRNA is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008150 |
biological_process |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0003674 |
molecular_function |
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
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| MELO3C028581.2.1.five_prime_UTR.1 | MELO3C028581.2.1.five_prime_UTR.1 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
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| MELO3C028581.2.1.exon.2 | MELO3C028581.2.1.exon.2 | exon |
| MELO3C028581.2.1.exon.1 | MELO3C028581.2.1.exon.1 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
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| MELO3C028581.2.1.CDS.2 | MELO3C028581.2.1.CDS.2 | CDS |
| MELO3C028581.2.1.CDS.1 | MELO3C028581.2.1.CDS.1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
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| MELO3C028581.2.1 | MELO3C028581.2.1-protein | polypeptide |
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | PRINTS | PR00239 | RHODOPSNTAIL | coord: 16..27
score: 94.44
coord: 41..53
score: 39.74 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..84 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 8..64 |
| None | No IPR available | PANTHER | PTHR31568:SF3 | CYSTEINE-RICH AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN A-RELATED | coord: 3..84 |
| None | No IPR available | PANTHER | PTHR31568 | FAMILY NOT NAMED | coord: 3..84 |
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