Cp4.1LG04g07560 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g07560
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG04 : 4050854 .. 4052964 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTACTTCAACCAGCCTCCGCCTCCCGTCGGCGTTCCTCCGCCGCAAGGTAACATCTAAACCAATGCTCTTAGTTCTGATGCATTTTCTTGAATTTCTAAGGTTCAAATCGAACGGATCGTGTTGTATTTAAGTAAAAAACGATCTACTCTTTGTTTTCGTCTCGCTTTCGCGCTTCGATTTGACTGATTTCCGGCTTTGATTCTGTGAATGTCGATGATTTTAGGTTATCCGCCTGAAGGTTATCCGAAGGACGCTTATCCGCCTCCAGGACATCCGCCGCCGGCTGGTTATCCTCCTGCTGGTTATCCACAGGCAGGATATCCGCCTCCGGCTTATGGACCGGCGTACGGTCAACCTCCGCCTCAATATCAACAACAACGGCAAGAAGTTGGATTCCTCGAAGGCTGGTAAGTATTTGCTTCTATTTCGTTTTTGATCTTCCTTGATGCGATTTAAACTGCGTTTTTCGAATTGAAATTGAGGCGATGCGGCGGAGATTGTTAGTTTAGGAAATAGTGTTTGCGTTGGCTGTTAGTGTTAGTGGATTGATTGCTGTTTTGATGTTGAGGAATTTGGAAACCGTCGAGTCGTAAAAACTGACACAGGTTGGAAAGATATTGCTCACATGAACAGAGGCGCAGATTTCGTTGATTTGTCGAACCCTTTTTCGTTTCGGTGGAACAAAAAGTGCTTTTCGTTTTCTTTCCTTTTTCAAACAAAAAAAATGCGTTCCAGAAGGGTCTTTTTGTCATTTTTTAAACTTTGAATTTGTTTTTTAATGTTTATTTAAACCTCAATTTTTTTGAAATAAATTTTTTAGACTAACTATATACAAAATTAAAATTAATTTCGGTCCATTTTTTCGGAATATGTAGAACTAGATTCGAGCAATATTATAGTTAAACTCAGAGATGTCCACTGTCATTGTCTCCACTTCCCGTAAATTTCTCGATTTATTTTTGAAGGAATCTGACAATAGAATGTTTTGGAAATTTGTGTGGATTGAGTTCTTGCAACAAAAGTTCCTATATATTGTGATGTCCCACGTTGATTGGGGAGGAGAACAAACCACCATTTATAAGGGTGCGGAAACCTTCCCCTACATTTTAAAGCCTTGAGAGGAAGTCCAAATAGGATAATATCTGCTAGCGGTGAATCTTAGTCGTTACAAATGGTATCAGAGCCAAGTTTTGGACGATGTGCCAGCCTTCTCGCTGTTCCGCGAAAGGCGATAGACACGAGGTAGTGTGCCAGTAAGGACGCTGGCCCCAAAGGGGGTGGATTTGGGGCGGTCCCACATCGATTGGAGGAAGGAAAGAGTGCCAGCGAGGATGCTGGGCCCCGAAGGGGGGGTGGATTGTGATGTCCCACATTGGTTGAGGAGGAGAACAAACCACCGGTGTGAAAACCTTCCCCTAACAGACGCGTTTTAAAGATTAGTTTGAAATTTATTTCTATCCCTTCTCACATTTATAGTTTAAATAAAGATTTGAACGCGGAGCCGAACTTATTAAATCCGAACTTATTAAATGTAGCTCTTGGGTTGAATGATTTATTGAGATTCCATTTGATTGAGGTGATTCAAATGAAAAATTGGAATATGGAATATATAAGAGAAGTGTAGTTAGGAAGTAATTAAAAGTTTGTTTGTGAAATTGACAGTGTGGCTGCTCTTTGCTGTTGCTTCGTGTTGGATGCTTGCTTTTAAGAACATAAGCAGGAAGCTTTTTGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGATCATATGGTGTATGAAATGTTAATTTAATATCCAATGTCGCAATGGTTTTATCTCTATCTTTATATTCTTATTTATACCAACTCTACTTCTCTTCATATATCTTGAACCTTGCTCCTAAACTATATACATTTTCAGCATTTATTACCCTTCATTTACCTCATTTTTCTTATTATTTGTTTCTTTTCGGCTATGCTTTTCACTAGTGCATGTCATCTAGAAATTCAACGTAGTTAACACAAACCTAACTCAATTCCGAATAATTGAATCAGGAATAATATCATATCATTTTAGAGGTTCATGATTCAAGAATATGGTATCAAAGTTATGCCCTTAACTTAGCAA

mRNA sequence

ATGAGTTATCCGCCTGAAGGTTATCCGAAGGACGCTTATCCGCCTCCAGGACATCCGCCGCCGGCTGGTTATCCTCCTGCTGGTTATCCACAGGCAGGATATCCGCCTCCGGCTTATGGACCGGCGTACGGTCAACCTCCGCCTCAATATCAACAACAACGGCAAGAAGTTGGATTCCTCGAAGGCTGTGTGGCTGCTCTTTGCTGTTGCTTCGTGTTGGATGCTTGCTTTTAAGAACATAAGCAGGAAGCTTTTTGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGATCATATGGTGTATGAAATGTTAATTTAATATCCAATGTCGCAATGGTTTTATCTCTATCTTTATATTCTTATTTATACCAACTCTACTTCTCTTCATATATCTTGAACCTTGCTCCTAAACTATATACATTTTCAGCATTTATTACCCTTCATTTACCTCATTTTTCTTATTATTTGTTTCTTTTCGGCTATGCTTTTCACTAGTGCATGTCATCTAGAAATTCAACGTAGTTAACACAAACCTAACTCAATTCCGAATAATTGAATCAGGAATAATATCATATCATTTTAGAGGTTCATGATTCAAGAATATGGTATCAAAGTTATGCCCTTAACTTAGCAA

Coding sequence (CDS)

ATGAGTTATCCGCCTGAAGGTTATCCGAAGGACGCTTATCCGCCTCCAGGACATCCGCCGCCGGCTGGTTATCCTCCTGCTGGTTATCCACAGGCAGGATATCCGCCTCCGGCTTATGGACCGGCGTACGGTCAACCTCCGCCTCAATATCAACAACAACGGCAAGAAGTTGGATTCCTCGAAGGCTGTGTGGCTGCTCTTTGCTGTTGCTTCGTGTTGGATGCTTGCTTTTAA

Protein sequence

MSYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYGQPPPQYQQQRQEVGFLEGCVAALCCCFVLDACF
Homology
[Close]
BLAST of Cp4.1LG04g07560 vs. Swiss-Prot
Match: CYT1A_ARATH (Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thaliana GN=At2g41420 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-21
Identity = 56/83 (67.47%), Postives = 61/83 (73.49%), Query Frame = 1 

Query: 3  YPPEGYPKDAYPPPGHPPPA----GYPPAGYPQAGYP----PPAYGPAYGQPPPQYQQQR 62
          YPPEGYPKDAYPP G+PP      GYPP GYPQ GYP    PP Y P Y  PPPQ+QQQ+
Sbjct: 17 YPPEGYPKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYPPPYAPQY-PPPPQHQQQQ 76

Query: 63 QEVGFLEGCVAALCCCFVLDACF 78
             GFLEGC+AALCCC +LDACF
Sbjct: 77 SSPGFLEGCLAALCCCCLLDACF 98

[Close]
BLAST of Cp4.1LG04g07560 vs. Swiss-Prot
Match: CYT1B_ARATH (Cysteine-rich and transmembrane domain-containing protein B OS=Arabidopsis thaliana GN=At3g57160 PE=3 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 5.6e-17
Identity = 51/87 (58.62%), Postives = 55/87 (63.22%), Query Frame = 1 

Query: 2   SYPPEGYPKDAYPPPG-------HPPPAGYPPAGYPQAGYPPPAYG----PAYGQPPPQY 61
           +YP EG PKDAYPPPG       +PPP GYP  GYP  GYPP  Y     P  G PP Q 
Sbjct: 15  AYPAEGPPKDAYPPPGQPYPQQGYPPPQGYPQQGYPPQGYPPQGYPEQGYPQQGYPPQQQ 74

Query: 62  QQQRQEVGFLEGCVAALCCCFVLDACF 78
           QQQ+   G LEGC+AALCC  VLDACF
Sbjct: 75  QQQKHSPGMLEGCIAALCCYCVLDACF 101

[Close]
BLAST of Cp4.1LG04g07560 vs. Swiss-Prot
Match: OPSD_ALLSU (Rhodopsin (Fragment) OS=Alloteuthis subulata GN=RHO PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-06
Identity = 30/50 (60.00%), Postives = 32/50 (64.00%), Query Frame = 1 

Query: 2   SYPPEGYPKDAYPPPGHP--PPAGYPPAGYPQAGYPPPAYGPAYGQPPPQ 50
           +YPP+GYP   YPPP     PP GYPP GYP  GYPPP  GP    PPPQ
Sbjct: 382 AYPPQGYPPQGYPPPPPQGYPPQGYPPQGYPPQGYPPPPQGPPPQGPPPQ 431

[Close]
BLAST of Cp4.1LG04g07560 vs. Swiss-Prot
Match: OPSD_LOLFO (Rhodopsin OS=Loligo forbesi GN=RHO PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-06
Identity = 30/50 (60.00%), Postives = 32/50 (64.00%), Query Frame = 1 

Query: 2   SYPPEGYPKDAYPPPGHP--PPAGYPPAGYPQAGYPPPAYGPAYGQPPPQ 50
           +YPP+GYP   YPPP     PP GYPP GYP  GYPPP  GP    PPPQ
Sbjct: 389 AYPPQGYPPQGYPPPPPQGYPPQGYPPQGYPPQGYPPPPQGPPPQGPPPQ 438

[Close]
BLAST of Cp4.1LG04g07560 vs. TrEMBL
Match: A0A0A0K2W8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070830 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-23
Identity = 58/78 (74.36%), Postives = 66/78 (84.62%), Query Frame = 1 

Query: 3  YPPEGYP-KDAYPPPGHPPPAGYPPAGYPQAGYPPPA-YGPAYGQ-PPPQYQQQRQEVGF 62
          YPP+GYP KDAYPP G+PP  GYPPAGYP  GYPPP  YGPAYG  PPPQ+Q Q++EVGF
Sbjct: 20 YPPQGYPPKDAYPPQGYPPQGGYPPAGYPPQGYPPPPPYGPAYGHHPPPQHQNQKKEVGF 79

Query: 63 LEGCVAALCCCFVLDACF 78
          +EGC+AALCCCF+LD CF
Sbjct: 80 VEGCLAALCCCFMLDVCF 97

[Close]
BLAST of Cp4.1LG04g07560 vs. TrEMBL
Match: M0TKV1_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.4e-21
Identity = 56/75 (74.67%), Postives = 59/75 (78.67%), Query Frame = 1 

Query: 3  YPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYGQPPPQYQQQRQEVGFLEG 62
          YPPEGYPKDAYPPPG+ PP GYPPAGYPQ GYPPP Y P Y QPPP   QQ     FLEG
Sbjct: 19 YPPEGYPKDAYPPPGY-PPQGYPPAGYPQQGYPPPGYPPPYAQPPP--PQQSSGPSFLEG 78

Query: 63 CVAALCCCFVLDACF 78
          C+AALCCC +LDACF
Sbjct: 79 CLAALCCCCLLDACF 90

[Close]
BLAST of Cp4.1LG04g07560 vs. TrEMBL
Match: V4LQH8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017476mg PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 7.6e-21
Identity = 57/79 (72.15%), Postives = 62/79 (78.48%), Query Frame = 1 

Query: 3  YPPEGYPKDAYPPPGHPPPA----GYPPAGYPQAGYPPPAYGPAYGQPPPQYQQQRQEVG 62
          YPPEGYPKDAYPP G+PPP     GYPP GYPQ GYPPP Y P Y  PPPQ+QQQ+   G
Sbjct: 17 YPPEGYPKDAYPPQGYPPPGYPQQGYPPQGYPQQGYPPP-YAPQY-PPPPQHQQQQNSPG 76

Query: 63 FLEGCVAALCCCFVLDACF 78
          FLEGC+AALCCC +LDACF
Sbjct: 77 FLEGCLAALCCCCLLDACF 93

[Close]
BLAST of Cp4.1LG04g07560 vs. TrEMBL
Match: K4CX01_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.2e-20
Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = 1 

Query: 3  YPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYGQPPP-QYQQQRQEVGFLE 62
          YPPEGY KDAYPPPG+ P  GYPP GYPQ GYPPP Y P YG PPP Q+QQQ    G ++
Sbjct: 19 YPPEGYSKDAYPPPGY-PQQGYPPQGYPQQGYPPPQYAPQYGAPPPQQHQQQSSSTGLMQ 78

Query: 63 GCVAALCCCFVLDACF 78
          GC+AALCCC +LDACF
Sbjct: 79 GCLAALCCCCLLDACF 93

[Close]
BLAST of Cp4.1LG04g07560 vs. TrEMBL
Match: A0A0D3C5M4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.4e-20
Identity = 57/76 (75.00%), Postives = 62/76 (81.58%), Query Frame = 1 

Query: 3  YPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYGQPPPQYQQQRQ-EVGFLE 62
          YPPEGYPKDAYPP G+ PP GYPP GYPQ GYPPP Y P Y  PPPQ+QQQ+Q   GFLE
Sbjct: 17 YPPEGYPKDAYPPQGY-PPQGYPPQGYPQQGYPPP-YAPQY--PPPQHQQQQQGSPGFLE 76

Query: 63 GCVAALCCCFVLDACF 78
          GC+AALCCC +LDACF
Sbjct: 77 GCLAALCCCCLLDACF 88

[Close]
BLAST of Cp4.1LG04g07560 vs. TAIR10
Match: AT2G41420.1 (AT2G41420.1 proline-rich family protein)

HSP 1 Score: 102.8 bits (255), Expect = 9.5e-23
Identity = 56/83 (67.47%), Postives = 61/83 (73.49%), Query Frame = 1 

Query: 3  YPPEGYPKDAYPPPGHPPPA----GYPPAGYPQAGYP----PPAYGPAYGQPPPQYQQQR 62
          YPPEGYPKDAYPP G+PP      GYPP GYPQ GYP    PP Y P Y  PPPQ+QQQ+
Sbjct: 17 YPPEGYPKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYPPPYAPQY-PPPPQHQQQQ 76

Query: 63 QEVGFLEGCVAALCCCFVLDACF 78
             GFLEGC+AALCCC +LDACF
Sbjct: 77 SSPGFLEGCLAALCCCCLLDACF 98

[Close]
BLAST of Cp4.1LG04g07560 vs. TAIR10
Match: AT5G67600.1 (AT5G67600.1 unknown protein)

HSP 1 Score: 90.5 bits (223), Expect = 4.9e-19
Identity = 51/81 (62.96%), Postives = 56/81 (69.14%), Query Frame = 1 

Query: 3  YPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYG---PAYGQPPPQYQ---QQRQE 62
          Y  E +P  A PP G+PP  GYPPAGYP AGYPPP Y    PA G PPPQY    QQ+Q 
Sbjct: 2  YHQEQHPVGAPPPQGYPPKDGYPPAGYPPAGYPPPGYAQGYPAQGYPPPQYSQAPQQKQN 61

Query: 63 VGFLEGCVAALCCCFVLDACF 78
           G LEGC+AALCCC +LDACF
Sbjct: 62 AGMLEGCLAALCCCCLLDACF 82

[Close]
BLAST of Cp4.1LG04g07560 vs. TAIR10
Match: AT3G49845.1 (AT3G49845.1 unknown protein)

HSP 1 Score: 81.6 bits (200), Expect = 2.3e-16
Identity = 52/111 (46.85%), Postives = 61/111 (54.95%), Query Frame = 1 

Query: 4   PPEGYP-KDAYPPPGHPPPAGYPP-----AGYPQAGYPPPAYG-----PAYGQPPPQYQQ 63
           PP+GYP K+ YPP G+PPPAGYPP     AGYP AGYPPP  G     PA G PPPQY Q
Sbjct: 14  PPQGYPPKEGYPPAGYPPPAGYPPPQYPQAGYPPAGYPPPQQGYGQGYPAQGYPPPQYPQ 73

Query: 64  --------------------------QRQEVGFLEGCVAALCCCFVLDACF 78
                                     ++   GF+EGC+A LCCC +L+ACF
Sbjct: 74  GHPPQYPYQGPPPPHYGQAPPKNKKDKKDSGGFMEGCLAMLCCCVLLEACF 124

[Close]
BLAST of Cp4.1LG04g07560 vs. TAIR10
Match: AT5G17650.1 (AT5G17650.1 glycine/proline-rich protein)

HSP 1 Score: 50.4 bits (119), Expect = 5.6e-07
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 1 

Query: 4  PPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYGQPPPQY 51
          PP GYP  AYPP G  PPAGYPPAGYP AGYP   Y P++G P P +
Sbjct: 50 PPHGYPPVAYPPHGGYPPAGYPPAGYPPAGYPAHGY-PSHGYPRPSH 95

[Close]
BLAST of Cp4.1LG04g07560 vs. TAIR10
Match: AT4G33660.1 (AT4G33660.1 unknown protein)

HSP 1 Score: 48.9 bits (115), Expect = 1.6e-06
Identity = 35/76 (46.05%), Postives = 41/76 (53.95%), Query Frame = 1 

Query: 1  MSYPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYGQPPPQYQQQRQEVGFL 60
          MS P   YP   YP PG+ P    PP G P   YPPP        PPP      ++VGFL
Sbjct: 1  MSDPKYAYP---YPAPGNYPQGPPPPVGVPPQYYPPPP-------PPPPPPPPPRKVGFL 60

Query: 61 EGCVAALCCCFVLDAC 77
          EG +AALCCC ++D C
Sbjct: 61 EGLLAALCCCCLVDEC 66

[Close]
BLAST of Cp4.1LG04g07560 vs. NCBI nr
Match: gi|778724815|ref|XP_011658867.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22
Identity = 58/78 (74.36%), Postives = 66/78 (84.62%), Query Frame = 1 

Query: 3  YPPEGYP-KDAYPPPGHPPPAGYPPAGYPQAGYPPPA-YGPAYGQ-PPPQYQQQRQEVGF 62
          YPP+GYP KDAYPP G+PP  GYPPAGYP  GYPPP  YGPAYG  PPPQ+Q Q++EVGF
Sbjct: 20 YPPQGYPPKDAYPPQGYPPQGGYPPAGYPPQGYPPPPPYGPAYGHHPPPQHQNQKKEVGF 79

Query: 63 LEGCVAALCCCFVLDACF 78
          +EGC+AALCCCF+LD CF
Sbjct: 80 VEGCLAALCCCFMLDVCF 97

[Close]
BLAST of Cp4.1LG04g07560 vs. NCBI nr
Match: gi|659110097|ref|XP_008455047.1| (PREDICTED: CYSTM1 family protein A-like [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 7.5e-22
Identity = 59/79 (74.68%), Postives = 66/79 (83.54%), Query Frame = 1 

Query: 3  YPPEGYP-KDAYPPPGHPPPAGYPPAGYPQAGYPP-PAYGPAY-GQPPPQYQ-QQRQEVG 62
          YPP+GYP KDAYPP G+PP  GYPPAGYP  GYPP P YGPAY G PPPQYQ  Q++EVG
Sbjct: 20 YPPQGYPPKDAYPPQGYPPQGGYPPAGYPPQGYPPQPPYGPAYGGHPPPQYQNNQKKEVG 79

Query: 63 FLEGCVAALCCCFVLDACF 78
          F+EGC+AALCCCF+LD CF
Sbjct: 80 FVEGCLAALCCCFMLDVCF 98

[Close]
BLAST of Cp4.1LG04g07560 vs. NCBI nr
Match: gi|695046436|ref|XP_009411048.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Musa acuminata subsp. malaccensis])

HSP 1 Score: 108.6 bits (270), Expect = 4.9e-21
Identity = 56/75 (74.67%), Postives = 59/75 (78.67%), Query Frame = 1 

Query: 3  YPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYGQPPPQYQQQRQEVGFLEG 62
          YPPEGYPKDAYPPPG+ PP GYPPAGYPQ GYPPP Y P Y QPPP   QQ     FLEG
Sbjct: 19 YPPEGYPKDAYPPPGY-PPQGYPPAGYPQQGYPPPGYPPPYAQPPP--PQQSSGPSFLEG 78

Query: 63 CVAALCCCFVLDACF 78
          C+AALCCC +LDACF
Sbjct: 79 CLAALCCCCLLDACF 90

[Close]
BLAST of Cp4.1LG04g07560 vs. NCBI nr
Match: gi|567215464|ref|XP_006411407.1| (hypothetical protein EUTSA_v10017476mg [Eutrema salsugineum])

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-20
Identity = 57/79 (72.15%), Postives = 62/79 (78.48%), Query Frame = 1 

Query: 3  YPPEGYPKDAYPPPGHPPPA----GYPPAGYPQAGYPPPAYGPAYGQPPPQYQQQRQEVG 62
          YPPEGYPKDAYPP G+PPP     GYPP GYPQ GYPPP Y P Y  PPPQ+QQQ+   G
Sbjct: 17 YPPEGYPKDAYPPQGYPPPGYPQQGYPPQGYPQQGYPPP-YAPQY-PPPPQHQQQQNSPG 76

Query: 63 FLEGCVAALCCCFVLDACF 78
          FLEGC+AALCCC +LDACF
Sbjct: 77 FLEGCLAALCCCCLLDACF 93

[Close]
BLAST of Cp4.1LG04g07560 vs. NCBI nr
Match: gi|697166984|ref|XP_009592331.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Nicotiana tomentosiformis])

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-20
Identity = 55/76 (72.37%), Postives = 60/76 (78.95%), Query Frame = 1 

Query: 3  YPPEGYPKDAYPPPGHPPPAGYPPAGYPQAGYPPPAYGPAYGQPPPQYQQQRQ-EVGFLE 62
          YPPEGYPKDAYPPPG+P   GYPP GYPQ GYPP  Y P YG PPPQ QQQ+    GF+E
Sbjct: 19 YPPEGYPKDAYPPPGYPQQ-GYPPQGYPQQGYPPQGYPPQYGAPPPQQQQQQSGSTGFME 78

Query: 63 GCVAALCCCFVLDACF 78
          GC+AALCCC +LDACF
Sbjct: 79 GCLAALCCCCLLDACF 93

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g07560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CYT1A_ARATH1.7e-2167.47Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thali... [more]
CYT1B_ARATH5.6e-1758.62Cysteine-rich and transmembrane domain-containing protein B OS=Arabidopsis thali... [more]
OPSD_ALLSU2.0e-0660.00Rhodopsin (Fragment) OS=Alloteuthis subulata GN=RHO PE=1 SV=1[more]
OPSD_LOLFO2.0e-0660.00Rhodopsin OS=Loligo forbesi GN=RHO PE=1 SV=1[more]
BLAST of Cp4.1LG04g07560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K2W8_CUCSA8.1e-2374.36Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070830 PE=4 SV=1[more]
M0TKV1_MUSAM3.4e-2174.67Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
V4LQH8_EUTSA7.6e-2172.15Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017476mg PE=4 SV=1[more]
K4CX01_SOLLC2.2e-2069.74Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A0D3C5M4_BRAOL6.4e-2075.00Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
BLAST of Cp4.1LG04g07560 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G41420.19.5e-2367.47 proline-rich family protein[more]
AT5G67600.14.9e-1962.96 unknown protein[more]
AT3G49845.12.3e-1646.85 unknown protein[more]
AT5G17650.15.6e-0763.83 glycine/proline-rich protein[more]
AT4G33660.11.6e-0646.05 unknown protein[more]
BLAST of Cp4.1LG04g07560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778724815|ref|XP_011658867.1|1.2e-2274.36PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cuc... [more]
gi|659110097|ref|XP_008455047.1|7.5e-2274.68PREDICTED: CYSTM1 family protein A-like [Cucumis melo][more]
gi|695046436|ref|XP_009411048.1|4.9e-2174.67PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Musa acu... [more]
gi|567215464|ref|XP_006411407.1|1.1e-2072.15hypothetical protein EUTSA_v10017476mg [Eutrema salsugineum][more]
gi|697166984|ref|XP_009592331.1|1.1e-2072.37PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Nicotian... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR028144CYSTM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g07560.1Cp4.1LG04g07560.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028144Cysteine-rich transmembrane CYSTM domainPFAMPF12734CYSTMcoord: 25..77
score: 9.
NoneNo IPR availablePANTHERPTHR31568FAMILY NOT NAMEDcoord: 3..77
score: 6.7
NoneNo IPR availablePANTHERPTHR31568:SF3CYSTM1 FAMILY PROTEIN A-RELATEDcoord: 3..77
score: 6.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g07560CsaV3_7G007760Cucumber (Chinese Long) v3cpecucB0868
Cp4.1LG04g07560Carg16322Silver-seed gourdcarcpeB0639
Cp4.1LG04g07560Carg23041Silver-seed gourdcarcpeB1033
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g07560Cucurbita pepo (Zucchini)cpecpeB269
Cp4.1LG04g07560Cucurbita pepo (Zucchini)cpecpeB400
Cp4.1LG04g07560Cucumber (Gy14) v1cgycpeB0602
Cp4.1LG04g07560Cucurbita maxima (Rimu)cmacpeB154
Cp4.1LG04g07560Cucurbita maxima (Rimu)cmacpeB539
Cp4.1LG04g07560Cucurbita maxima (Rimu)cmacpeB749
Cp4.1LG04g07560Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g07560Cucurbita moschata (Rifu)cmocpeB321
Cp4.1LG04g07560Cucurbita moschata (Rifu)cmocpeB494
Cp4.1LG04g07560Cucurbita moschata (Rifu)cmocpeB703
Cp4.1LG04g07560Wild cucumber (PI 183967)cpecpiB697
Cp4.1LG04g07560Cucumber (Chinese Long) v2cpecuB695
Cp4.1LG04g07560Bottle gourd (USVL1VR-Ls)cpelsiB543
Cp4.1LG04g07560Bottle gourd (USVL1VR-Ls)cpelsiB548
Cp4.1LG04g07560Watermelon (Charleston Gray)cpewcgB590
Cp4.1LG04g07560Watermelon (97103) v1cpewmB665
Cp4.1LG04g07560Melon (DHL92) v3.5.1cpemeB604
Cp4.1LG04g07560Cucumber (Gy14) v2cgybcpeB969
Cp4.1LG04g07560Melon (DHL92) v3.6.1cpemedB715
Cp4.1LG04g07560Silver-seed gourdcarcpeB0409
Cp4.1LG04g07560Silver-seed gourdcarcpeB0529
Cp4.1LG04g07560Wax gourdcpewgoB0856