CsaV3_6G036630 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G036630
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Rotundifolia-like protein
Location	chr6 : 20430574 .. 20431386 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCAAGCAATGAACATTCGGGATTAGAATAAAACCACAAATTCTCGAACTCCTCATATTTCATCAACTAATATCATATTCACACACATCATAATATATTATATTATTATTTTACACTATTCCCAAACACAAAATCACAAAATCCCATCATTCTTTTTTATCACAATATTTAATTATTCCCACCCCCCCCAAAAAAAAAACCCATATATTATTACTATAAAAGAAAGAAACTCCCAATCCCCTCAAACCAAAACTTTCTCATTCTTCTCTCACAACTCCAAAACATCTTCTACTTCTACAAAACTAAATCCAGTCTCTCTTCTTCTTTCTCCTCTCTAAAAAAGTTCCAAACAAAAGGAAAAGGGCATTATAGTAAAATGACGGAAGAAAGAAGAAGGCTATGCAAGAGAACACCGTCGTCCGCTTGTAGTAGGAGATCGGGAACGGCGTCGTTTAAGCAGAGGTGTAGTTTGCTTGTGAAGGAACAAAGAGCTAGGTTTTACATTCTTCGCCGATGTGTCGTCATGCTCGTCTGTTGGAATTACTATGCTGACCCTTGATTTTTTTTTTCTTTTTTCTTTTTTGTATATAGTTTTATTAGCCAATACCCATTATTAACTTTGGAGGTTTTTTTTTCCTTTTCTTTTTGTTTTGTTTTTCTTTTTAATTTTTATATTGGCCTAGCTACCTGTGATTTGGAAAGAACAATTAGATATATTTTATAGTATATTCCTTTTAAAATTTTATACAAGTTTTGGTATATTTCAATATCACATCTCTTTCATTAATTAATATTATTCCCACTCTCTTTTTC

mRNA sequence

ATGACGGAAGAAAGAAGAAGGCTATGCAAGAGAACACCGTCGTCCGCTTGTAGTAGGAGATCGGGAACGGCGTCGTTTAAGCAGAGGTGTAGTTTGCTTGTGAAGGAACAAAGAGCTAGGTTTTACATTCTTCGCCGATGTGTCGTCATGCTCGTCTGTTGGAATTACTATGCTGACCCTTGA

Coding sequence (CDS)

ATGACGGAAGAAAGAAGAAGGCTATGCAAGAGAACACCGTCGTCCGCTTGTAGTAGGAGATCGGGAACGGCGTCGTTTAAGCAGAGGTGTAGTTTGCTTGTGAAGGAACAAAGAGCTAGGTTTTACATTCTTCGCCGATGTGTCGTCATGCTCGTCTGTTGGAATTACTATGCTGACCCTTGA

Protein sequence

MTEERRRLCKRTPSSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP

Homology

[Close]

BLAST of CsaV3_6G036630 vs. NCBI nr
Match: OAY38885.1 (hypothetical protein MANES_10G049900 [Manihot esculenta])

HSP 1 Score: 65.5 bits (158), Expect = 7.3e-08
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 10 KRTPSSACSR--RSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
          K+  +S C+R  R    SF Q+CS LVKEQRA+FYILRRC+VML+CWN Y D
Sbjct: 2  KQENTSFCNRHVRDPCRSFGQKCSRLVKEQRAKFYILRRCIVMLICWNEYGD 53

[Close]

BLAST of CsaV3_6G036630 vs. NCBI nr
Match: PNT22514.1 (hypothetical protein POPTR_008G035900v3 [Populus trichocarpa])

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-07
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 10 KRTPSSACSR--RSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP 61
          K+  +  CS+  R    SF +RCS LVKEQRARFYILRRCV MLVCW+ Y +P
Sbjct: 2  KQENTGFCSKHVRDPCRSFGRRCSSLVKEQRARFYILRRCVTMLVCWHDYGEP 54

[Close]

BLAST of CsaV3_6G036630 vs. NCBI nr
Match: PON42568.1 (DEVIL-like protein [Trema orientalis])

HSP 1 Score: 62.8 bits (151), Expect = 4.7e-07
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 17 CSR--RSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP 61
          C+R  R    SF +RCSLLVKEQRARFYILRRC+ ML+CW+   DP
Sbjct: 28 CTRHVRDPCRSFGRRCSLLVKEQRARFYILRRCITMLLCWHERGDP 73

[Close]

BLAST of CsaV3_6G036630 vs. NCBI nr
Match: AEX12455.1 (hypothetical protein 2_3237_01, partial [Pinus taeda] >AEX12456.1 hypothetical protein 2_3237_01, partial [Pinus taeda] >AEX12457.1 hypothetical protein 2_3237_01, partial [Pinus taeda] >AEX12458.1 hypothetical protein 2_3237_01, partial [Pinus taeda] >AEX12459.1 hypothetical protein 2_3237_01, partial [Pinus taeda])

HSP 1 Score: 62.0 bits (149), Expect = 8.1e-07
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 24 ASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
          +SF +RCS LVKEQRARFYI+RRCV ML+CWN Y D
Sbjct: 23 SSFTRRCSSLVKEQRARFYIMRRCVSMLLCWNKYGD 58

[Close]

BLAST of CsaV3_6G036630 vs. NCBI nr
Match: PON32315.1 (DEVIL-like protein [Parasponia andersonii])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 17 CSR--RSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP 61
          C+R  R    SF +RCSLLVK+QRARFYILRRC+ ML+CW+   DP
Sbjct: 20 CTRHVRDPCRSFGRRCSLLVKDQRARFYILRRCITMLLCWHERGDP 65

[Close]

BLAST of CsaV3_6G036630 vs. TAIR10
Match: AT2G39705.1 (ROTUNDIFOLIA like 8)

HSP 1 Score: 57.4 bits (137), Expect = 3.6e-09
Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 7  RLCKRTPSSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCW-NYYAD 60
          R    + SS   ++ G  +F ++C+ LVKEQRARFYI+RRCV+ML+CW + Y+D
Sbjct: 33 RSSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRCVIMLICWRDNYSD 86

[Close]

BLAST of CsaV3_6G036630 vs. TAIR10
Match: AT3G55515.1 (ROTUNDIFOLIA like 7)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-08
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 19 RRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCW 55
          ++ G   F ++C  LVKEQRARFYI+RRCVVML+CW
Sbjct: 33 QKQGKYGFTRKCGRLVKEQRARFYIMRRCVVMLICW 68

[Close]

BLAST of CsaV3_6G036630 vs. TAIR10
Match: AT2G36985.1 (DVL family protein)

HSP 1 Score: 52.0 bits (123), Expect = 1.5e-07
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 25 SFKQRCSLLVKEQRARFYILRRCVVMLVCWN 56
          +F Q+CS +VK+QRA+FYILRRC+ MLVCW+
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWH 44

[Close]

BLAST of CsaV3_6G036630 vs. TAIR10
Match: AT2G29125.1 (ROTUNDIFOLIA like 2)

HSP 1 Score: 50.1 bits (118), Expect = 5.8e-07
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 28  QRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
           Q+ S L KEQ+ARFYI+RRCV MLVCW+ + D
Sbjct: 83  QKYSSLAKEQKARFYIMRRCVAMLVCWHKHGD 114

[Close]

BLAST of CsaV3_6G036630 vs. TAIR10
Match: AT1G53708.1 (ROTUNDIFOLIA like 9)

HSP 1 Score: 48.9 bits (115), Expect = 1.3e-06
Identity = 21/35 (60.00%), Postives = 24/35 (68.57%), Query Frame = 0


Query: 25 SFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
          +F  +C+ LVKEQRAR YILRRC  ML CW    D
Sbjct: 13 AFTSKCASLVKEQRARLYILRRCATMLCCWYIQGD 47

[Close]

BLAST of CsaV3_6G036630 vs. TrEMBL
Match: tr|A0A2C9V3J5|A0A2C9V3J5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G049900 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.8e-08
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 10 KRTPSSACSR--RSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
          K+  +S C+R  R    SF Q+CS LVKEQRA+FYILRRC+VML+CWN Y D
Sbjct: 2  KQENTSFCNRHVRDPCRSFGQKCSRLVKEQRAKFYILRRCIVMLICWNEYGD 53

[Close]

BLAST of CsaV3_6G036630 vs. TrEMBL
Match: tr|B9HLH7|B9HLH7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G035900v3 PE=4 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-07
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 10 KRTPSSACSR--RSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP 61
          K+  +  CS+  R    SF +RCS LVKEQRARFYILRRCV MLVCW+ Y +P
Sbjct: 2  KQENTGFCSKHVRDPCRSFGRRCSSLVKEQRARFYILRRCVTMLVCWHDYGEP 54

[Close]

BLAST of CsaV3_6G036630 vs. TrEMBL
Match: tr|A0A2P5B186|A0A2P5B186_9ROSA (DEVIL-like protein OS=Trema orientalis OX=63057 GN=TorDVL8 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-07
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 17 CSR--RSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP 61
          C+R  R    SF +RCSLLVKEQRARFYILRRC+ ML+CW+   DP
Sbjct: 28 CTRHVRDPCRSFGRRCSLLVKEQRARFYILRRCITMLLCWHERGDP 73

[Close]

BLAST of CsaV3_6G036630 vs. TrEMBL
Match: tr|M0TCK0|M0TCK0_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-07
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 19 RRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYA 59
          RRS T SF +RC+ LVKEQRARFYI+RRCVV+L+CW  Y+
Sbjct: 19 RRSMTQSFSRRCASLVKEQRARFYIMRRCVVLLICWRDYS 58

[Close]

BLAST of CsaV3_6G036630 vs. TrEMBL
Match: tr|A0A1S8ADH2|A0A1S8ADH2_CITLI (DVL family protein OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-07
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 1  MTEERRRLCKRTPSSACSR--RSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWN--Y 60
          M  ++      T +  CS+  R    SF +RCS LVKEQRARFYILRRCVVMLVCW+   
Sbjct: 1  MNNKQENTAASTAAGFCSKHLRKPCRSFGRRCSSLVKEQRARFYILRRCVVMLVCWHDYE 60

The following BLAST results are available for this feature:

BLAST of CsaV3_6G036630 vs. NCBI nr


Match Name	E-value	Identity	Description
OAY38885.1	7.3e-08	61.54	hypothetical protein MANES_10G049900 [Manihot esculenta]	[more]
PNT22514.1	3.6e-07	60.38	hypothetical protein POPTR_008G035900v3 [Populus trichocarpa]	[more]
PON42568.1	4.7e-07	65.22	DEVIL-like protein [Trema orientalis]	[more]
AEX12455.1	8.1e-07	75.00	hypothetical protein 2_3237_01, partial [Pinus taeda] >AEX12456.1 hypothetical p...	[more]
PON32315.1	1.1e-06	63.04	DEVIL-like protein [Parasponia andersonii]	[more]

BLAST of CsaV3_6G036630 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G39705.1	3.6e-09	50.00	ROTUNDIFOLIA like 8	[more]
AT3G55515.1	2.3e-08	63.89	ROTUNDIFOLIA like 7	[more]
AT2G36985.1	1.5e-07	67.74	DVL family protein	[more]
AT2G29125.1	5.8e-07	65.63	ROTUNDIFOLIA like 2	[more]
AT1G53708.1	1.3e-06	60.00	ROTUNDIFOLIA like 9	[more]

BLAST of CsaV3_6G036630 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G036630 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2C9V3J5\|A0A2C9V3J5_MANES	4.8e-08	61.54	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G049900 PE=4 SV=...	[more]
tr\|B9HLH7\|B9HLH7_POPTR	2.4e-07	60.38	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G035900v3 PE=...	[more]
tr\|A0A2P5B186\|A0A2P5B186_9ROSA	3.1e-07	65.22	DEVIL-like protein OS=Trema orientalis OX=63057 GN=TorDVL8 PE=4 SV=1	[more]
tr\|M0TCK0\|M0TCK0_MUSAM	3.1e-07	70.00	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1	[more]
tr\|A0A1S8ADH2\|A0A1S8ADH2_CITLI	4.1e-07	54.69	DVL family protein OS=Citrus limon OX=2708 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012552	DVL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G036630.1	CsaV3_6G036630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 35..53 e-value: 7.6E-13 score: 48.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR33102:SF3	DVL13-RELATED	coord: 9..59
None	No IPR available	PANTHER	PTHR33102	FAMILY NOT NAMED	coord: 9..59

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G036630	Cucsa.137510	Cucumber (Gy14) v1	cgycucB205
CsaV3_6G036630	CmaCh15G004760	Cucurbita maxima (Rimu)	cmacucB0366
CsaV3_6G036630	CmoCh15G004850	Cucurbita moschata (Rifu)	cmocucB0362
CsaV3_6G036630	CmoCh04G026810	Cucurbita moschata (Rifu)	cmocucB0901
CsaV3_6G036630	Cp4.1LG01g24470	Cucurbita pepo (Zucchini)	cpecucB0571
CsaV3_6G036630	Cp4.1LG13g10050	Cucurbita pepo (Zucchini)	cpecucB0241
CsaV3_6G036630	Carg02420	Silver-seed gourd	carcucB0301
CsaV3_6G036630	Cla013753	Watermelon (97103) v1	cucwmB483
CsaV3_6G036630	MELO3C019818	Melon (DHL92) v3.5.1	cucmeB485
CsaV3_6G036630	ClCG08G007660	Watermelon (Charleston Gray)	cucwcgB516
CsaV3_6G036630	MELO3C019818.2	Melon (DHL92) v3.6.1	cucmedB475
CsaV3_6G036630	Cla97C08G150430	Watermelon (97103) v2	cucwmbB507
CsaV3_6G036630	Bhi04G001072	Wax gourd	cucwgoB610

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G036630	Wax gourd	cucwgoB585
CsaV3_6G036630	Silver-seed gourd	carcucB0727
CsaV3_6G036630	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G036630	Cucurbita maxima (Rimu)	cmacucB0909
CsaV3_6G036630	Wild cucumber (PI 183967)	cpicucB363
CsaV3_6G036630	Bottle gourd (USVL1VR-Ls)	cuclsiB510