Cp4.1LG01g24470 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g24470
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRotundifolia-like protein
LocationCp4.1LG01 : 18938450 .. 18938656 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGAAGAAAGAAGAAGGCTGTGCAAGAGGGAAGTGAGAGGCTCATCGTCTTCAACCTGCTGCAGTAGTAGGAGGAGGAGATCGGGAACGGCGTCGTTTAAGCAGAGATGCAGTTTGCTTGTTAAGGAACAGAGAGCAAGGTTTTACATCCTCCGCCGATGTGTCGTCATGCTCGTCTGCTGGCATTACTACGCCGACCCTTAA

mRNA sequence

ATGATGGAAGAAAGAAGAAGGCTGTGCAAGAGGGAAGTGAGAGGCTCATCGTCTTCAACCTGCTGCAGTAGTAGGAGGAGGAGATCGGGAACGGCGTCGTTTAAGCAGAGATGCAGTTTGCTTGTTAAGGAACAGAGAGCAAGGTTTTACATCCTCCGCCGATGTGTCGTCATGCTCGTCTGCTGGCATTACTACGCCGACCCTTAA

Coding sequence (CDS)

ATGATGGAAGAAAGAAGAAGGCTGTGCAAGAGGGAAGTGAGAGGCTCATCGTCTTCAACCTGCTGCAGTAGTAGGAGGAGGAGATCGGGAACGGCGTCGTTTAAGCAGAGATGCAGTTTGCTTGTTAAGGAACAGAGAGCAAGGTTTTACATCCTCCGCCGATGTGTCGTCATGCTCGTCTGCTGGCATTACTACGCCGACCCTTAA

Protein sequence

MMEERRRLCKREVRGSSSSTCCSSRRRRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWHYYADP
Homology
[Close]
BLAST of Cp4.1LG01g24470 vs. TrEMBL
Match: B9HLH7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s03580g PE=4 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-07
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1 

Query: 24 SRRRRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWHYYADP 69
          S+  R    SF +RCS LVKEQRARFYILRRCV MLVCWH Y +P
Sbjct: 10 SKHVRDPCRSFGRRCSSLVKEQRARFYILRRCVTMLVCWHDYGEP 54

[Close]
BLAST of Cp4.1LG01g24470 vs. TrEMBL
Match: A0A0A0KQA4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182670 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-07
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 1 

Query: 2  MEERRRLCKREVRG---SSSSTCCSSRRRRSGTASFKQRCSLLVKEQRARFYILRRCVVM 61
          MEE+ +L K+       SSSS+C   R       SF ++C+ LVKEQRARFYI+RRCV M
Sbjct: 22 MEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRKCAKLVKEQRARFYIMRRCVTM 81

Query: 62 LVCWHYYAD 68
          L+CWH Y D
Sbjct: 82 LICWHNYND 90

[Close]
BLAST of Cp4.1LG01g24470 vs. TrEMBL
Match: A0A0D2S6S2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G021600 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-07
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 1 

Query: 2  MEERRRLCKREVRGSSSSTCCSSRRRRSG---------TASFKQRCSLLVKEQRARFYIL 61
          ++E+ +L K+E   SSSS+  SSRR RS            +F ++C+ LVKEQRARFYI+
Sbjct: 19 LDEKWKLSKKETSSSSSSS--SSRRSRSSFIVKNSSNKRCAFTRKCARLVKEQRARFYIM 78

Query: 62 RRCVVMLVCWHYYAD 68
          RRCV ML+CW  Y D
Sbjct: 79 RRCVTMLICWRDYTD 91

[Close]
BLAST of Cp4.1LG01g24470 vs. TrEMBL
Match: A0A059ADQ2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01236 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-07
Identity = 39/75 (52.00%), Postives = 50/75 (66.67%), Query Frame = 1 

Query: 3  EERRRLCKREV--RGSSSSTCCSSRRRRS---GTAS-----FKQRCSLLVKEQRARFYIL 62
          +E+ +L K+E   R  SSS+ CSS    S   G+AS     F +RC+ LV+EQRARFYI+
Sbjct: 14 DEKWKLSKKESSSRSRSSSSSCSSSSTSSIMKGSASRRRCAFTRRCARLVREQRARFYIV 73

Query: 63 RRCVVMLVCWHYYAD 68
          RRCV ML+CWH Y D
Sbjct: 74 RRCVTMLICWHEYGD 88

[Close]
BLAST of Cp4.1LG01g24470 vs. TrEMBL
Match: A5BGF1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024942 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.2e-07
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 1 

Query: 2  MEERRRLCKREVRGSSSSTCCSSRRRRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVC 61
          ++E+ +L K+E   S SST    R       SF ++C+ LVKEQRARFYI+RRCV ML+C
Sbjct: 16 LDEKWKLSKKEGSRSRSSTSPLMRNSSQRRCSFTRKCASLVKEQRARFYIVRRCVTMLIC 75

Query: 62 WHYYAD 68
          W  Y+D
Sbjct: 76 WREYSD 81

[Close]
BLAST of Cp4.1LG01g24470 vs. TAIR10
Match: AT2G39705.1 (AT2G39705.1 ROTUNDIFOLIA like 8)

HSP 1 Score: 57.0 bits (136), Expect = 5.3e-09
Identity = 29/66 (43.94%), Postives = 47/66 (71.21%), Query Frame = 1 

Query: 2  MEERRRLCKRE-----VRGSSSSTCCSSRRRRSGTASFKQRCSLLVKEQRARFYILRRCV 61
          ++E+ +L K++     +  SSS++  S   ++ G  +F ++C+ LVKEQRARFYI+RRCV
Sbjct: 15 LDEKWKLSKKDGGASRITRSSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRCV 74

Query: 62 VMLVCW 63
          +ML+CW
Sbjct: 75 IMLICW 80

[Close]
BLAST of Cp4.1LG01g24470 vs. TAIR10
Match: AT3G55515.1 (AT3G55515.1 ROTUNDIFOLIA like 7)

HSP 1 Score: 54.7 bits (130), Expect = 2.6e-08
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1 

Query: 7  RLCKREVRGSSSSTCCSSR--RRRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCW 63
          +L K+E  G +     ++R  R++ G   F ++C  LVKEQRARFYI+RRCVVML+CW
Sbjct: 11 QLSKKESLGDNGGALNTTRSSRQKQGKYGFTRKCGRLVKEQRARFYIMRRCVVMLICW 68

[Close]
BLAST of Cp4.1LG01g24470 vs. TAIR10
Match: AT2G36985.1 (AT2G36985.1 DVL family protein)

HSP 1 Score: 53.5 bits (127), Expect = 5.8e-08
Identity = 22/31 (70.97%), Postives = 28/31 (90.32%), Query Frame = 1 

Query: 33 SFKQRCSLLVKEQRARFYILRRCVVMLVCWH 64
          +F Q+CS +VK+QRA+FYILRRC+ MLVCWH
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWH 44

[Close]
BLAST of Cp4.1LG01g24470 vs. TAIR10
Match: AT2G29125.1 (AT2G29125.1 ROTUNDIFOLIA like 2)

HSP 1 Score: 53.1 bits (126), Expect = 7.6e-08
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 1 

Query: 16  SSSSTCCSSRRRRSGTAS---FKQRCSLLVKEQRARFYILRRCVVMLVCWHYYAD 68
           SS S   S + RRS ++S     Q+ S L KEQ+ARFYI+RRCV MLVCWH + D
Sbjct: 60  SSISRSFSRKERRSSSSSSSSITQKYSSLAKEQKARFYIMRRCVAMLVCWHKHGD 114

[Close]
BLAST of Cp4.1LG01g24470 vs. TAIR10
Match: AT5G59510.1 (AT5G59510.1 ROTUNDIFOLIA like 5)

HSP 1 Score: 50.4 bits (119), Expect = 4.9e-07
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1 

Query: 10  KREVRGSSSSTCCSSRRRRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWHYYA 67
           K  V  SS+S C  SR      AS  ++C  + KE ++RFYI++RCV+MLVCWH +A
Sbjct: 85  KCPVDTSSTSKCSISRSLSQKGASVTRKCRNMAKEHKSRFYIMKRCVLMLVCWHKHA 141

[Close]
BLAST of Cp4.1LG01g24470 vs. NCBI nr
Match: gi|659113321|ref|XP_008456514.1| (PREDICTED: uncharacterized protein LOC103496443 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 7.6e-18
Identity = 54/68 (79.41%), Postives = 57/68 (83.82%), Query Frame = 1 

Query: 1  MMEERRRLCKREVRGSSSSTCCSSRRRRSGTASFKQRCSLLVKEQRARFYILRRCVVMLV 60
          M EE RRLCKR     +SS+ CS   RRSGTASFKQRCSLLVKEQRARFYILRRCVVMLV
Sbjct: 1  MTEEGRRLCKR-----TSSSACS---RRSGTASFKQRCSLLVKEQRARFYILRRCVVMLV 60

Query: 61 CWHYYADP 69
          CW+YYADP
Sbjct: 61 CWNYYADP 60

[Close]
BLAST of Cp4.1LG01g24470 vs. NCBI nr
Match: gi|657996031|ref|XP_008390376.1| (PREDICTED: uncharacterized protein LOC103452634 [Malus domestica])

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-08
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 1 

Query: 11 REVRGSSSSTCCSSRRRRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWHYYADP 69
          ++ +GSSS      RR R    SF +RCS+LVKEQRARFYILRRCV ML+CWH   DP
Sbjct: 2  KQGQGSSSRNNFCCRRVREPCRSFGRRCSMLVKEQRARFYILRRCVTMLICWHERGDP 59

[Close]
BLAST of Cp4.1LG01g24470 vs. NCBI nr
Match: gi|694448961|ref|XP_009350239.1| (PREDICTED: uncharacterized protein LOC103941774 [Pyrus x bretschneideri])

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-08
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 1 

Query: 14 RGSSSSTCCSSRRRRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWHYYADP 69
          +GSSS      RR R    SF +RCS+LVKEQRARFYILRRCV ML+CWH   DP
Sbjct: 29 QGSSSRNNFCCRRVREPCRSFGRRCSMLVKEQRARFYILRRCVTMLLCWHERGDP 83

[Close]
BLAST of Cp4.1LG01g24470 vs. NCBI nr
Match: gi|719993720|ref|XP_010253964.1| (PREDICTED: uncharacterized protein LOC104595084 [Nelumbo nucifera])

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07
Identity = 34/51 (66.67%), Postives = 36/51 (70.59%), Query Frame = 1 

Query: 18 SSTCCSSRRRRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWHYYADP 69
          S T   SR  R    SF QRCS LVKEQRARFYILRRCV+MLVCW+   DP
Sbjct: 4  SGTSFCSRHLRDPCRSFGQRCSRLVKEQRARFYILRRCVIMLVCWNDCGDP 54

[Close]
BLAST of Cp4.1LG01g24470 vs. NCBI nr
Match: gi|566182182|ref|XP_002311997.2| (hypothetical protein POPTR_0008s03580g [Populus trichocarpa])

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-07
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1 

Query: 24 SRRRRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWHYYADP 69
          S+  R    SF +RCS LVKEQRARFYILRRCV MLVCWH Y +P
Sbjct: 10 SKHVRDPCRSFGRRCSSLVKEQRARFYILRRCVTMLVCWHDYGEP 54

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g24470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g24470 vs. TrEMBL
Match NameE-valueIdentityDescription
B9HLH7_POPTR1.1e-0768.89Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s03580g PE=4 SV=2[more]
A0A0A0KQA4_CUCSA1.4e-0752.17Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182670 PE=4 SV=1[more]
A0A0D2S6S2_GOSRA2.5e-0749.33Uncharacterized protein OS=Gossypium raimondii GN=B456_013G021600 PE=4 SV=1[more]
A0A059ADQ2_EUCGR3.2e-0752.00Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01236 PE=4 SV=1[more]
A5BGF1_VITVI4.2e-0750.00Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024942 PE=4 SV=1[more]
BLAST of Cp4.1LG01g24470 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G39705.15.3e-0943.94 ROTUNDIFOLIA like 8[more]
AT3G55515.12.6e-0850.00 ROTUNDIFOLIA like 7[more]
AT2G36985.15.8e-0870.97 DVL family protein[more]
AT2G29125.17.6e-0854.55 ROTUNDIFOLIA like 2[more]
AT5G59510.14.9e-0747.37 ROTUNDIFOLIA like 5[more]
BLAST of Cp4.1LG01g24470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659113321|ref|XP_008456514.1|7.6e-1879.41PREDICTED: uncharacterized protein LOC103496443 [Cucumis melo][more]
gi|657996031|ref|XP_008390376.1|1.4e-0860.34PREDICTED: uncharacterized protein LOC103452634 [Malus domestica][more]
gi|694448961|ref|XP_009350239.1|2.5e-0863.64PREDICTED: uncharacterized protein LOC103941774 [Pyrus x bretschneideri][more]
gi|719993720|ref|XP_010253964.1|1.2e-0766.67PREDICTED: uncharacterized protein LOC104595084 [Nelumbo nucifera][more]
gi|566182182|ref|XP_002311997.2|1.6e-0768.89hypothetical protein POPTR_0008s03580g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012552DVL
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g24470.1Cp4.1LG01g24470.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012552DVLPFAMPF08137DVLcoord: 43..61
score: 1.2
NoneNo IPR availablePANTHERPTHR33102FAMILY NOT NAMEDcoord: 16..67
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g24470Cucsa.137510Cucumber (Gy14) v1cgycpeB0372
Cp4.1LG01g24470CmaCh15G004760Cucurbita maxima (Rimu)cmacpeB317
Cp4.1LG01g24470CmoCh15G004850Cucurbita moschata (Rifu)cmocpeB279
Cp4.1LG01g24470CmoCh04G026810Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g24470Cla013753Watermelon (97103) v1cpewmB395
Cp4.1LG01g24470MELO3C019818Melon (DHL92) v3.5.1cpemeB396
Cp4.1LG01g24470ClCG08G007660Watermelon (Charleston Gray)cpewcgB417
Cp4.1LG01g24470MELO3C019818.2Melon (DHL92) v3.6.1cpemedB461
Cp4.1LG01g24470CsaV3_6G036630Cucumber (Chinese Long) v3cpecucB0571
Cp4.1LG01g24470Bhi04G001072Wax gourdcpewgoB0527
Cp4.1LG01g24470Carg02420Silver-seed gourdcarcpeB0374
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g24470Cp4.1LG13g10050Cucurbita pepo (Zucchini)cpecpeB199
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g24470Silver-seed gourdcarcpeB0965
Cp4.1LG01g24470Silver-seed gourdcarcpeB1176
Cp4.1LG01g24470Cucumber (Chinese Long) v3cpecucB0527
Cp4.1LG01g24470Wax gourdcpewgoB0560
Cp4.1LG01g24470Cucurbita pepo (Zucchini)cpecpeB038
Cp4.1LG01g24470Cucurbita pepo (Zucchini)cpecpeB075
Cp4.1LG01g24470Cucurbita pepo (Zucchini)cpecpeB379
Cp4.1LG01g24470Cucurbita pepo (Zucchini)cpecpeB384
Cp4.1LG01g24470Cucurbita pepo (Zucchini)cpecpeB407
Cp4.1LG01g24470Cucumber (Gy14) v1cgycpeB0316
Cp4.1LG01g24470Cucumber (Gy14) v1cgycpeB0807
Cp4.1LG01g24470Cucurbita maxima (Rimu)cmacpeB435
Cp4.1LG01g24470Cucurbita maxima (Rimu)cmacpeB663
Cp4.1LG01g24470Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g24470Cucurbita maxima (Rimu)cmacpeB734
Cp4.1LG01g24470Cucurbita maxima (Rimu)cmacpeB877
Cp4.1LG01g24470Cucurbita moschata (Rifu)cmocpeB401
Cp4.1LG01g24470Cucurbita moschata (Rifu)cmocpeB615
Cp4.1LG01g24470Cucurbita moschata (Rifu)cmocpeB687
Cp4.1LG01g24470Cucurbita moschata (Rifu)cmocpeB814
Cp4.1LG01g24470Wild cucumber (PI 183967)cpecpiB387
Cp4.1LG01g24470Wild cucumber (PI 183967)cpecpiB425
Cp4.1LG01g24470Wild cucumber (PI 183967)cpecpiB463
Cp4.1LG01g24470Cucumber (Chinese Long) v2cpecuB427
Cp4.1LG01g24470Cucumber (Chinese Long) v2cpecuB387
Cp4.1LG01g24470Cucumber (Chinese Long) v2cpecuB462
Cp4.1LG01g24470Bottle gourd (USVL1VR-Ls)cpelsiB324
Cp4.1LG01g24470Bottle gourd (USVL1VR-Ls)cpelsiB365
Cp4.1LG01g24470Bottle gourd (USVL1VR-Ls)cpelsiB382
Cp4.1LG01g24470Watermelon (Charleston Gray)cpewcgB386
Cp4.1LG01g24470Watermelon (Charleston Gray)cpewcgB398
Cp4.1LG01g24470Watermelon (97103) v1cpewmB438
Cp4.1LG01g24470Watermelon (97103) v1cpewmB450
Cp4.1LG01g24470Melon (DHL92) v3.5.1cpemeB385
Cp4.1LG01g24470Cucumber (Gy14) v2cgybcpeB211
Cp4.1LG01g24470Cucumber (Gy14) v2cgybcpeB635
Cp4.1LG01g24470Cucumber (Gy14) v2cgybcpeB800
Cp4.1LG01g24470Melon (DHL92) v3.6.1cpemedB446
Cp4.1LG01g24470Silver-seed gourdcarcpeB0679