Carg02420 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02420
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Rotundifolia-like protein
Location	Cucurbita_argyrosperma_scaffold_007 : 1673857 .. 1674048 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAAGAAAGAAGAAGGCTGTGCAGGGGGGAAGTACGCGACTCGTCGTCGGCTTGCAGTAGGAGATCAGCAACGGCGTCGTTTAAGCAGAGATGCAGTTTACTGGTGAAGGAGCAGAGAGCTAGGTTTTACATTCTTCGCCGATGTGTCGTCATGCTCGTGTGTTGGAATTACTATGCTGACCCTTGA

mRNA sequence

ATGATGGAAGAAAGAAGAAGGCTGTGCAGGGGGGAAGTACGCGACTCGTCGTCGGCTTGCAGTAGGAGATCAGCAACGGCGTCGTTTAAGCAGAGATGCAGTTTACTGGTGAAGGAGCAGAGAGCTAGGTTTTACATTCTTCGCCGATGTGTCGTCATGCTCGTGTGTTGGAATTACTATGCTGACCCTTGA

Coding sequence (CDS)

ATGATGGAAGAAAGAAGAAGGCTGTGCAGGGGGGAAGTACGCGACTCGTCGTCGGCTTGCAGTAGGAGATCAGCAACGGCGTCGTTTAAGCAGAGATGCAGTTTACTGGTGAAGGAGCAGAGAGCTAGGTTTTACATTCTTCGCCGATGTGTCGTCATGCTCGTGTGTTGGAATTACTATGCTGACCCTTGA

Protein sequence

MMEERRRLCRGEVRDSSSACSRRSATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP

Homology

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BLAST of Carg02420 vs. NCBI nr
Match: OAY38885.1 (hypothetical protein MANES_10G049900 [Manihot esculenta])

HSP 1 Score: 65.1 bits (157), Expect = 9.9e-08
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 14 RDSSSACSR--RSATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 63
          ++++S C+R  R    SF Q+CS LVKEQRA+FYILRRC+VML+CWN Y D
Sbjct: 3  QENTSFCNRHVRDPCRSFGQKCSRLVKEQRAKFYILRRCIVMLICWNEYGD 53

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BLAST of Carg02420 vs. NCBI nr
Match: PNT22514.1 (hypothetical protein POPTR_008G035900v3 [Populus trichocarpa])

HSP 1 Score: 62.8 bits (151), Expect = 4.9e-07
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 14 RDSSSACSR--RSATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP 64
          ++++  CS+  R    SF +RCS LVKEQRARFYILRRCV MLVCW+ Y +P
Sbjct: 3  QENTGFCSKHVRDPCRSFGRRCSSLVKEQRARFYILRRCVTMLVCWHDYGEP 54

[Close]

BLAST of Carg02420 vs. NCBI nr
Match: PON42568.1 (DEVIL-like protein [Trema orientalis])

HSP 1 Score: 62.0 bits (149), Expect = 8.3e-07
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 13 VRDSSSACSR--RSATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP 64
          V   ++ C+R  R    SF +RCSLLVKEQRARFYILRRC+ ML+CW+   DP
Sbjct: 21 VMKKNNFCTRHVRDPCRSFGRRCSLLVKEQRARFYILRRCITMLLCWHERGDP 73

[Close]

BLAST of Carg02420 vs. NCBI nr
Match: PIA26735.1 (hypothetical protein AQUCO_09000003v1 [Aquilegia coerulea])

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-06
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 15 DSSSACSR--RSATASFKQRCSLLVKEQRARFYILRRCVVMLVCWN 59
          DS+S C R  R    SF QRCS LVKEQR++FYILRRCV+MLVCW+
Sbjct: 6  DSTSFCCRNVRDPCRSFAQRCSRLVKEQRSKFYILRRCVIMLVCWH 51

[Close]

BLAST of Carg02420 vs. NCBI nr
Match: PSR98012.1 (hypothetical protein CEY00_Acc24600 [Actinidia chinensis var. chinensis])

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-06
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 15 DSSSACSRR--SATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 63
          +S+S C++R      SF +RCS LVK+QRARFYILRRCVVMLVCWN   D
Sbjct: 7  ESASFCNQRVWDPCRSFGRRCSRLVKDQRARFYILRRCVVMLVCWNDCGD 56

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BLAST of Carg02420 vs. TAIR10
Match: AT2G39705.1 (ROTUNDIFOLIA like 8)

HSP 1 Score: 57.8 bits (138), Expect = 2.9e-09
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 7  RLCRGEVRDSSSACSRRSATASFKQRCSLLVKEQRARFYILRRCVVMLVCW-NYYAD 63
          R+ R     SSS   ++    +F ++C+ LVKEQRARFYI+RRCV+ML+CW + Y+D
Sbjct: 30 RITRSSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRCVIMLICWRDNYSD 86

[Close]

BLAST of Carg02420 vs. TAIR10
Match: AT3G55515.1 (ROTUNDIFOLIA like 7)

HSP 1 Score: 51.6 bits (122), Expect = 2.0e-07
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 11 GEVRDSSSACSRRSATASFKQRCSLLVKEQRARFYILRRCVVMLVCW 58
          G   +++ +  ++     F ++C  LVKEQRARFYI+RRCVVML+CW
Sbjct: 22 GGALNTTRSSRQKQGKYGFTRKCGRLVKEQRARFYIMRRCVVMLICW 68

[Close]

BLAST of Carg02420 vs. TAIR10
Match: AT2G36985.1 (DVL family protein)

HSP 1 Score: 51.2 bits (121), Expect = 2.7e-07
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 28 SFKQRCSLLVKEQRARFYILRRCVVMLVCWN 59
          +F Q+CS +VK+QRA+FYILRRC+ MLVCW+
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWH 44

[Close]

BLAST of Carg02420 vs. TAIR10
Match: AT2G29125.1 (ROTUNDIFOLIA like 2)

HSP 1 Score: 48.9 bits (115), Expect = 1.3e-06
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 31  QRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 63
           Q+ S L KEQ+ARFYI+RRCV MLVCW+ + D
Sbjct: 83  QKYSSLAKEQKARFYIMRRCVAMLVCWHKHGD 114

[Close]

BLAST of Carg02420 vs. TAIR10
Match: AT1G53708.1 (ROTUNDIFOLIA like 9)

HSP 1 Score: 48.1 bits (113), Expect = 2.3e-06
Identity = 21/35 (60.00%), Postives = 24/35 (68.57%), Query Frame = 0


Query: 28 SFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 63
          +F  +C+ LVKEQRAR YILRRC  ML CW    D
Sbjct: 13 AFTSKCASLVKEQRARLYILRRCATMLCCWYIQGD 47

[Close]

BLAST of Carg02420 vs. TrEMBL
Match: tr|A0A2C9V3J5|A0A2C9V3J5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G049900 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.5e-08
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 14 RDSSSACSR--RSATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 63
          ++++S C+R  R    SF Q+CS LVKEQRA+FYILRRC+VML+CWN Y D
Sbjct: 3  QENTSFCNRHVRDPCRSFGQKCSRLVKEQRAKFYILRRCIVMLICWNEYGD 53

[Close]

BLAST of Carg02420 vs. TrEMBL
Match: tr|B9HLH7|B9HLH7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G035900v3 PE=4 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 3.2e-07
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 14 RDSSSACSR--RSATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP 64
          ++++  CS+  R    SF +RCS LVKEQRARFYILRRCV MLVCW+ Y +P
Sbjct: 3  QENTGFCSKHVRDPCRSFGRRCSSLVKEQRARFYILRRCVTMLVCWHDYGEP 54

[Close]

BLAST of Carg02420 vs. TrEMBL
Match: tr|A0A2P5B186|A0A2P5B186_9ROSA (DEVIL-like protein OS=Trema orientalis OX=63057 GN=TorDVL8 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-07
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 13 VRDSSSACSR--RSATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP 64
          V   ++ C+R  R    SF +RCSLLVKEQRARFYILRRC+ ML+CW+   DP
Sbjct: 21 VMKKNNFCTRHVRDPCRSFGRRCSLLVKEQRARFYILRRCITMLLCWHERGDP 73

[Close]

BLAST of Carg02420 vs. TrEMBL
Match: tr|M0TCK0|M0TCK0_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-07
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 22 RRSATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYA 62
          RRS T SF +RC+ LVKEQRARFYI+RRCVV+L+CW  Y+
Sbjct: 19 RRSMTQSFSRRCASLVKEQRARFYIMRRCVVLLICWRDYS 58

[Close]

BLAST of Carg02420 vs. TrEMBL
Match: tr|A0A2G5C619|A0A2G5C619_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_09000003v1 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.4e-07
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 15 DSSSACSR--RSATASFKQRCSLLVKEQRARFYILRRCVVMLVCWN 59
          DS+S C R  R    SF QRCS LVKEQR++FYILRRCV+MLVCW+
Sbjct: 6  DSTSFCCRNVRDPCRSFAQRCSRLVKEQRSKFYILRRCVIMLVCWH 51

The following BLAST results are available for this feature:

BLAST of Carg02420 vs. NCBI nr


Match Name	E-value	Identity	Description
OAY38885.1	9.9e-08	60.78	hypothetical protein MANES_10G049900 [Manihot esculenta]	[more]
PNT22514.1	4.9e-07	59.62	hypothetical protein POPTR_008G035900v3 [Populus trichocarpa]	[more]
PON42568.1	8.3e-07	58.49	DEVIL-like protein [Trema orientalis]	[more]
PIA26735.1	1.4e-06	67.39	hypothetical protein AQUCO_09000003v1 [Aquilegia coerulea]	[more]
PSR98012.1	1.4e-06	64.00	hypothetical protein CEY00_Acc24600 [Actinidia chinensis var. chinensis]	[more]

BLAST of Carg02420 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G39705.1	2.9e-09	49.12	ROTUNDIFOLIA like 8	[more]
AT3G55515.1	2.0e-07	48.94	ROTUNDIFOLIA like 7	[more]
AT2G36985.1	2.7e-07	67.74	DVL family protein	[more]
AT2G29125.1	1.3e-06	65.63	ROTUNDIFOLIA like 2	[more]
AT1G53708.1	2.3e-06	60.00	ROTUNDIFOLIA like 9	[more]

BLAST of Carg02420 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg02420 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2C9V3J5\|A0A2C9V3J5_MANES	6.5e-08	60.78	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G049900 PE=4 SV=...	[more]
tr\|B9HLH7\|B9HLH7_POPTR	3.2e-07	59.62	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G035900v3 PE=...	[more]
tr\|A0A2P5B186\|A0A2P5B186_9ROSA	5.5e-07	58.49	DEVIL-like protein OS=Trema orientalis OX=63057 GN=TorDVL8 PE=4 SV=1	[more]
tr\|M0TCK0\|M0TCK0_MUSAM	5.5e-07	70.00	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1	[more]
tr\|A0A2G5C619\|A0A2G5C619_AQUCA	9.4e-07	67.39	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_09000003v1 PE=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012552	DVL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02420-RA	Carg02420-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 38..56 e-value: 8.3E-13 score: 47.8
None	No IPR available	PANTHER	PTHR33102	FAMILY NOT NAMED	coord: 14..62
None	No IPR available	PANTHER	PTHR33102:SF3	DVL13-RELATED	coord: 14..62

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02420	Cla013753	Watermelon (97103) v1	carwmB0251
Carg02420	MELO3C019818	Melon (DHL92) v3.5.1	carmeB0270
Carg02420	ClCG08G007660	Watermelon (Charleston Gray)	carwcgB0262
Carg02420	Cucsa.137510	Cucumber (Gy14) v1	carcgyB0308
Carg02420	CmaCh15G004760	Cucurbita maxima (Rimu)	carcmaB0362
Carg02420	CmoCh04G026810	Cucurbita moschata (Rifu)	carcmoB0370
Carg02420	CmoCh15G004850	Cucurbita moschata (Rifu)	carcmoB0362
Carg02420	Cp4.1LG13g10050	Cucurbita pepo (Zucchini)	carcpeB0366
Carg02420	Cp4.1LG01g24470	Cucurbita pepo (Zucchini)	carcpeB0374
Carg02420	MELO3C019818.2	Melon (DHL92) v3.6.1	carmedB0281
Carg02420	CsaV3_6G036630	Cucumber (Chinese Long) v3	carcucB0301
Carg02420	Cla97C08G150430	Watermelon (97103) v2	carwmbB0277
Carg02420	Bhi04G001072	Wax gourd	carwgoB0350

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02420	Silver-seed gourd	carcarB184
Carg02420	Silver-seed gourd	carcarB306
Carg02420	Silver-seed gourd	carcarB309
Carg02420	Cucumber (Gy14) v2	carcgybB0282
Carg02420	Cucumber (Gy14) v2	carcgybB0285
Carg02420	Cucumber (Gy14) v1	carcgyB0318
Carg02420	Cucurbita maxima (Rimu)	carcmaB0370
Carg02420	Cucurbita maxima (Rimu)	carcmaB0374
Carg02420	Cucurbita moschata (Rifu)	carcmoB0366
Carg02420	Cucurbita pepo (Zucchini)	carcpeB0369
Carg02420	Wild cucumber (PI 183967)	carcpiB0299
Carg02420	Wild cucumber (PI 183967)	carcpiB0302
Carg02420	Cucumber (Chinese Long) v2	carcuB0295
Carg02420	Cucumber (Chinese Long) v2	carcuB0298
Carg02420	Cucumber (Chinese Long) v3	carcucB0298
Carg02420	Bottle gourd (USVL1VR-Ls)	carlsiB240
Carg02420	Bottle gourd (USVL1VR-Ls)	carlsiB244
Carg02420	Melon (DHL92) v3.5.1	carmeB0263
Carg02420	Melon (DHL92) v3.6.1	carmedB0274
Carg02420	Watermelon (Charleston Gray)	carwcgB0258
Carg02420	Watermelon (97103) v1	carwmB0255