Cla97C08G150430 (gene) Watermelon (97103) v2

Overview
NameCla97C08G150430
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionROTUNDIFOLIA like 8
LocationCla97Chr08 : 18879638 .. 18879820 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGAAGAAAGAAGAAGGCTATGCAAGAGGGAATCATCGGCTTGCAGTAGGAGATCATCGGGAACGGCGTCGTTTAAGCAGAGGTGCAGTTTGCTTGTGAAGGAGCAGAGAGCGAGGTTTTACATTCTTCGCCGATGTGTCGTCATGCTCGTCTGTTGGAATTACTATGCTGACCCTTGA

mRNA sequence

ATGAGTGAAGAAAGAAGAAGGCTATGCAAGAGGGAATCATCGGCTTGCAGTAGGAGATCATCGGGAACGGCGTCGTTTAAGCAGAGGTGCAGTTTGCTTGTGAAGGAGCAGAGAGCGAGGTTTTACATTCTTCGCCGATGTGTCGTCATGCTCGTCTGTTGGAATTACTATGCTGACCCTTGA

Coding sequence (CDS)

ATGAGTGAAGAAAGAAGAAGGCTATGCAAGAGGGAATCATCGGCTTGCAGTAGGAGATCATCGGGAACGGCGTCGTTTAAGCAGAGGTGCAGTTTGCTTGTGAAGGAGCAGAGAGCGAGGTTTTACATTCTTCGCCGATGTGTCGTCATGCTCGTCTGTTGGAATTACTATGCTGACCCTTGA

Protein sequence

MSEERRRLCKRESSACSRRSSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP
Homology
[Close]
BLAST of Cla97C08G150430 vs. NCBI nr
Match: PNT22514.1 (hypothetical protein POPTR_008G035900v3 [Populus trichocarpa])

HSP 1 Score: 62.4 bits (150), Expect = 6.1e-07
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 25 SFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP 61
          SF +RCS LVKEQRARFYILRRCV MLVCW+ Y +P
Sbjct: 19 SFGRRCSSLVKEQRARFYILRRCVTMLVCWHDYGEP 54

[Close]
BLAST of Cla97C08G150430 vs. NCBI nr
Match: XP_023737243.1 (uncharacterized protein LOC111885195 [Lactuca sativa] >PLY71137.1 hypothetical protein LSAT_9X64901 [Lactuca sativa])

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-06
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 2  SEERRRLCKRESSACSRRSSGTAS-----FKQRCSLLVKEQRARFYILRRCVVMLVCWNY 60
          S+  ++L K+ S + SR SS T+S     F ++C+ LVKEQRARFYI+RRCV MLVCW  
Sbjct: 21 SDNNQKLSKKGSISRSRSSSATSSHRRCTFTRKCARLVKEQRARFYIMRRCVSMLVCWRD 80

[Close]
BLAST of Cla97C08G150430 vs. NCBI nr
Match: AEX12455.1 (hypothetical protein 2_3237_01, partial [Pinus taeda] >AEX12456.1 hypothetical protein 2_3237_01, partial [Pinus taeda] >AEX12457.1 hypothetical protein 2_3237_01, partial [Pinus taeda] >AEX12458.1 hypothetical protein 2_3237_01, partial [Pinus taeda] >AEX12459.1 hypothetical protein 2_3237_01, partial [Pinus taeda])

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-06
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 24 ASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
          +SF +RCS LVKEQRARFYI+RRCV ML+CWN Y D
Sbjct: 23 SSFTRRCSSLVKEQRARFYIMRRCVSMLLCWNKYGD 58

[Close]
BLAST of Cla97C08G150430 vs. NCBI nr
Match: KMZ59212.1 (ROTUNDIFOLIA like 8 [Zostera marina])

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-06
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 25 SFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
          SF +RCS LVKEQRARFYI+RRC++ML+CW  Y D
Sbjct: 58 SFARRCSSLVKEQRARFYIMRRCIIMLICWREYPD 92

[Close]
BLAST of Cla97C08G150430 vs. NCBI nr
Match: OAY38611.1 (hypothetical protein MANES_10G028700 [Manihot esculenta])

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-06
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 0 

Query: 4  ERRRLCKRESSACSRRSSGT----------ASFKQRCSLLVKEQRARFYILRRCVVMLVC 60
          E+ +L K+E S+ S RSS +          +SF ++C+ LVKEQRARFYI+RRCV ML+C
Sbjct: 19 EKWKLSKKEGSSRSSRSSTSPLMKNSSQRRSSFTRKCARLVKEQRARFYIMRRCVAMLIC 78

[Close]
BLAST of Cla97C08G150430 vs. TrEMBL
Match: tr|B9HLH7|B9HLH7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G035900v3 PE=4 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 4.0e-07
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 25 SFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP 61
          SF +RCS LVKEQRARFYILRRCV MLVCW+ Y +P
Sbjct: 19 SFGRRCSSLVKEQRARFYILRRCVTMLVCWHDYGEP 54

[Close]
BLAST of Cla97C08G150430 vs. TrEMBL
Match: tr|A0A2J6K821|A0A2J6K821_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_9X64901 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.9e-07
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 2  SEERRRLCKRESSACSRRSSGTAS-----FKQRCSLLVKEQRARFYILRRCVVMLVCWNY 60
          S+  ++L K+ S + SR SS T+S     F ++C+ LVKEQRARFYI+RRCV MLVCW  
Sbjct: 21 SDNNQKLSKKGSISRSRSSSATSSHRRCTFTRKCARLVKEQRARFYIMRRCVSMLVCWRD 80

[Close]
BLAST of Cla97C08G150430 vs. TrEMBL
Match: tr|K7NN29|K7NN29_PINTA (Uncharacterized protein (Fragment) OS=Pinus taeda OX=3352 GN=2_3237_01 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.0e-07
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 24 ASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
          +SF +RCS LVKEQRARFYI+RRCV ML+CWN Y D
Sbjct: 23 SSFTRRCSSLVKEQRARFYIMRRCVSMLLCWNKYGD 58

[Close]
BLAST of Cla97C08G150430 vs. TrEMBL
Match: tr|A0A1S8ADH2|A0A1S8ADH2_CITLI (DVL family protein OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 25 SFKQRCSLLVKEQRARFYILRRCVVMLVCWN--YYADP 61
          SF +RCS LVKEQRARFYILRRCVVMLVCW+   Y DP
Sbjct: 27 SFGRRCSSLVKEQRARFYILRRCVVMLVCWHDYEYCDP 64

[Close]
BLAST of Cla97C08G150430 vs. TrEMBL
Match: tr|A0A0K9NT44|A0A0K9NT44_ZOSMR (ROTUNDIFOLIA like 8 OS=Zostera marina OX=29655 GN=ZOSMA_6G01450 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-06
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 25 SFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
          SF +RCS LVKEQRARFYI+RRC++ML+CW  Y D
Sbjct: 58 SFARRCSSLVKEQRARFYIMRRCIIMLICWREYPD 92

[Close]
BLAST of Cla97C08G150430 vs. TAIR10
Match: AT2G39705.1 (ROTUNDIFOLIA like 8)

HSP 1 Score: 56.2 bits (134), Expect = 7.9e-09
Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 0 

Query: 7  RLCKRESSACSRRSSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCW-NYYAD 60
          R     SS+ + +  G  +F ++C+ LVKEQRARFYI+RRCV+ML+CW + Y+D
Sbjct: 33 RSSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRCVIMLICWRDNYSD 86

[Close]
BLAST of Cla97C08G150430 vs. TAIR10
Match: AT3G55515.1 (ROTUNDIFOLIA like 7)

HSP 1 Score: 56.2 bits (134), Expect = 7.9e-09
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 17 SRRSSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCW 55
          SR+  G   F ++C  LVKEQRARFYI+RRCVVML+CW
Sbjct: 31 SRQKQGKYGFTRKCGRLVKEQRARFYIMRRCVVMLICW 68

[Close]
BLAST of Cla97C08G150430 vs. TAIR10
Match: AT2G36985.1 (DVL family protein)

HSP 1 Score: 51.6 bits (122), Expect = 1.9e-07
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 25 SFKQRCSLLVKEQRARFYILRRCVVMLVCWN 56
          +F Q+CS +VK+QRA+FYILRRC+ MLVCW+
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWH 44

[Close]
BLAST of Cla97C08G150430 vs. TAIR10
Match: AT2G29125.1 (ROTUNDIFOLIA like 2)

HSP 1 Score: 49.3 bits (116), Expect = 9.7e-07
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 28  QRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
           Q+ S L KEQ+ARFYI+RRCV MLVCW+ + D
Sbjct: 83  QKYSSLAKEQKARFYIMRRCVAMLVCWHKHGD 114

[Close]
BLAST of Cla97C08G150430 vs. TAIR10
Match: AT1G53708.1 (ROTUNDIFOLIA like 9)

HSP 1 Score: 48.1 bits (113), Expect = 2.2e-06
Identity = 21/35 (60.00%), Postives = 24/35 (68.57%), Query Frame = 0 

Query: 25 SFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
          +F  +C+ LVKEQRAR YILRRC  ML CW    D
Sbjct: 13 AFTSKCASLVKEQRARLYILRRCATMLCCWYIQGD 47

The following BLAST results are available for this feature:
BLAST of Cla97C08G150430 vs. NCBI nr
Match NameE-valueIdentityDescription
PNT22514.16.1e-0777.78hypothetical protein POPTR_008G035900v3 [Populus trichocarpa][more]
XP_023737243.11.0e-0653.97uncharacterized protein LOC111885195 [Lactuca sativa] >PLY71137.1 hypothetical p... [more]
AEX12455.11.4e-0675.00hypothetical protein 2_3237_01, partial [Pinus taeda] >AEX12456.1 hypothetical p... [more]
KMZ59212.12.3e-0671.43ROTUNDIFOLIA like 8 [Zostera marina][more]
OAY38611.12.3e-0650.00hypothetical protein MANES_10G028700 [Manihot esculenta][more]
BLAST of Cla97C08G150430 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|B9HLH7|B9HLH7_POPTR4.0e-0777.78Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G035900v3 PE=... [more]
tr|A0A2J6K821|A0A2J6K821_LACSA6.9e-0753.97Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_9X64901 PE=4 SV=1[more]
tr|K7NN29|K7NN29_PINTA9.0e-0775.00Uncharacterized protein (Fragment) OS=Pinus taeda OX=3352 GN=2_3237_01 PE=4 SV=1[more]
tr|A0A1S8ADH2|A0A1S8ADH2_CITLI1.2e-0678.95DVL family protein OS=Citrus limon OX=2708 PE=4 SV=1[more]
tr|A0A0K9NT44|A0A0K9NT44_ZOSMR1.5e-0671.43ROTUNDIFOLIA like 8 OS=Zostera marina OX=29655 GN=ZOSMA_6G01450 PE=4 SV=1[more]
BLAST of Cla97C08G150430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C08G150430 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G39705.17.9e-0950.00ROTUNDIFOLIA like 8[more]
AT3G55515.17.9e-0965.79ROTUNDIFOLIA like 7[more]
AT2G36985.11.9e-0767.74DVL family protein[more]
AT2G29125.19.7e-0765.63ROTUNDIFOLIA like 2[more]
AT1G53708.12.2e-0660.00ROTUNDIFOLIA like 9[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012552DVL
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0048367 shoot system development
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C08G150430.1Cla97C08G150430.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012552DVLPFAMPF08137DVLcoord: 35..53
e-value: 7.6E-13
score: 48.0
NoneNo IPR availablePANTHERPTHR33102:SF3DVL13-RELATEDcoord: 6..59
NoneNo IPR availablePANTHERPTHR33102FAMILY NOT NAMEDcoord: 6..59

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C08G150430Cla013753Watermelon (97103) v1wmwmbB100
Cla97C08G150430MELO3C019818Melon (DHL92) v3.5.1mewmbB307
Cla97C08G150430ClCG08G007660Watermelon (Charleston Gray)wcgwmbB336
Cla97C08G150430Cucsa.137510Cucumber (Gy14) v1cgywmbB231
Cla97C08G150430CmaCh15G004760Cucurbita maxima (Rimu)cmawmbB317
Cla97C08G150430CmoCh15G004850Cucurbita moschata (Rifu)cmowmbB300
Cla97C08G150430CmoCh04G026810Cucurbita moschata (Rifu)cmowmbB762
Cla97C08G150430MELO3C019818.2Melon (DHL92) v3.6.1medwmbB296
Cla97C08G150430Carg02420Silver-seed gourdcarwmbB0277
Cla97C08G150430CsaV3_6G036630Cucumber (Chinese Long) v3cucwmbB507
Cla97C08G150430Bhi04G001072Wax gourdwgowmbB330
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C08G150430Wild cucumber (PI 183967)cpiwmbB425
Cla97C08G150430Wild cucumber (PI 183967)cpiwmbB515
Cla97C08G150430Cucumber (Chinese Long) v3cucwmbB421
Cla97C08G150430Cucumber (Chinese Long) v2cuwmbB247
Cla97C08G150430Cucumber (Chinese Long) v2cuwmbB404
Cla97C08G150430Cucumber (Chinese Long) v2cuwmbB489
Cla97C08G150430Bottle gourd (USVL1VR-Ls)lsiwmbB245
Cla97C08G150430Bottle gourd (USVL1VR-Ls)lsiwmbB300
Cla97C08G150430Bottle gourd (USVL1VR-Ls)lsiwmbB448
Cla97C08G150430Melon (DHL92) v3.6.1medwmbB066
Cla97C08G150430Melon (DHL92) v3.5.1mewmbB071
Cla97C08G150430Melon (DHL92) v3.5.1mewmbB358
Cla97C08G150430Watermelon (Charleston Gray)wcgwmbB052
Cla97C08G150430Watermelon (Charleston Gray)wcgwmbB205
Cla97C08G150430Watermelon (Charleston Gray)wcgwmbB244
Cla97C08G150430Watermelon (97103) v1wmwmbB072
Cla97C08G150430Watermelon (97103) v1wmwmbB223
Cla97C08G150430Watermelon (97103) v1wmwmbB303
Cla97C08G150430Wax gourdwgowmbB541
Cla97C08G150430Watermelon (97103) v2wmbwmbB057
Cla97C08G150430Watermelon (97103) v2wmbwmbB127
Cla97C08G150430Watermelon (97103) v2wmbwmbB143
Cla97C08G150430Silver-seed gourdcarwmbB0257
Cla97C08G150430Silver-seed gourdcarwmbB0713
Cla97C08G150430Silver-seed gourdcarwmbB0881
Cla97C08G150430Cucumber (Gy14) v2cgybwmbB386
Cla97C08G150430Cucumber (Gy14) v2cgybwmbB465
Cla97C08G150430Cucumber (Gy14) v1cgywmbB535
Cla97C08G150430Cucurbita maxima (Rimu)cmawmbB277
Cla97C08G150430Cucurbita maxima (Rimu)cmawmbB435
Cla97C08G150430Cucurbita maxima (Rimu)cmawmbB703
Cla97C08G150430Cucurbita maxima (Rimu)cmawmbB787
Cla97C08G150430Cucurbita maxima (Rimu)cmawmbB788
Cla97C08G150430Cucurbita moschata (Rifu)cmowmbB259
Cla97C08G150430Cucurbita moschata (Rifu)cmowmbB761
Cla97C08G150430Cucurbita moschata (Rifu)cmowmbB845