Cla97C08G150430.1 (mRNA) Watermelon (97103) v2

Overview
NameCla97C08G150430.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionROTUNDIFOLIA like 8
LocationCla97Chr08 : 18879638 .. 18879820 (+)
Sequence length183
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGAAGAAAGAAGAAGGCTATGCAAGAGGGAATCATCGGCTTGCAGTAGGAGATCATCGGGAACGGCGTCGTTTAAGCAGAGGTGCAGTTTGCTTGTGAAGGAGCAGAGAGCGAGGTTTTACATTCTTCGCCGATGTGTCGTCATGCTCGTCTGTTGGAATTACTATGCTGACCCTTGA

mRNA sequence

ATGAGTGAAGAAAGAAGAAGGCTATGCAAGAGGGAATCATCGGCTTGCAGTAGGAGATCATCGGGAACGGCGTCGTTTAAGCAGAGGTGCAGTTTGCTTGTGAAGGAGCAGAGAGCGAGGTTTTACATTCTTCGCCGATGTGTCGTCATGCTCGTCTGTTGGAATTACTATGCTGACCCTTGA

Coding sequence (CDS)

ATGAGTGAAGAAAGAAGAAGGCTATGCAAGAGGGAATCATCGGCTTGCAGTAGGAGATCATCGGGAACGGCGTCGTTTAAGCAGAGGTGCAGTTTGCTTGTGAAGGAGCAGAGAGCGAGGTTTTACATTCTTCGCCGATGTGTCGTCATGCTCGTCTGTTGGAATTACTATGCTGACCCTTGA

Protein sequence

MSEERRRLCKRESSACSRRSSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP
Homology
[Close]
BLAST of Cla97C08G150430.1 vs. NCBI nr
Match: PNT22514.1 (hypothetical protein POPTR_008G035900v3 [Populus trichocarpa])

HSP 1 Score: 62.4 bits (150), Expect = 6.1e-07
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 25 SFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP 61
          SF +RCS LVKEQRARFYILRRCV MLVCW+ Y +P
Sbjct: 19 SFGRRCSSLVKEQRARFYILRRCVTMLVCWHDYGEP 54

[Close]
BLAST of Cla97C08G150430.1 vs. NCBI nr
Match: XP_023737243.1 (uncharacterized protein LOC111885195 [Lactuca sativa] >PLY71137.1 hypothetical protein LSAT_9X64901 [Lactuca sativa])

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-06
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 2  SEERRRLCKRESSACSRRSSGTAS-----FKQRCSLLVKEQRARFYILRRCVVMLVCWNY 60
          S+  ++L K+ S + SR SS T+S     F ++C+ LVKEQRARFYI+RRCV MLVCW  
Sbjct: 21 SDNNQKLSKKGSISRSRSSSATSSHRRCTFTRKCARLVKEQRARFYIMRRCVSMLVCWRD 80

[Close]
BLAST of Cla97C08G150430.1 vs. NCBI nr
Match: AEX12455.1 (hypothetical protein 2_3237_01, partial [Pinus taeda] >AEX12456.1 hypothetical protein 2_3237_01, partial [Pinus taeda] >AEX12457.1 hypothetical protein 2_3237_01, partial [Pinus taeda] >AEX12458.1 hypothetical protein 2_3237_01, partial [Pinus taeda] >AEX12459.1 hypothetical protein 2_3237_01, partial [Pinus taeda])

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-06
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 24 ASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
          +SF +RCS LVKEQRARFYI+RRCV ML+CWN Y D
Sbjct: 23 SSFTRRCSSLVKEQRARFYIMRRCVSMLLCWNKYGD 58

[Close]
BLAST of Cla97C08G150430.1 vs. NCBI nr
Match: KMZ59212.1 (ROTUNDIFOLIA like 8 [Zostera marina])

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-06
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 25 SFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
          SF +RCS LVKEQRARFYI+RRC++ML+CW  Y D
Sbjct: 58 SFARRCSSLVKEQRARFYIMRRCIIMLICWREYPD 92

[Close]
BLAST of Cla97C08G150430.1 vs. NCBI nr
Match: OAY38611.1 (hypothetical protein MANES_10G028700 [Manihot esculenta])

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-06
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 0 

Query: 4  ERRRLCKRESSACSRRSSGT----------ASFKQRCSLLVKEQRARFYILRRCVVMLVC 60
          E+ +L K+E S+ S RSS +          +SF ++C+ LVKEQRARFYI+RRCV ML+C
Sbjct: 19 EKWKLSKKEGSSRSSRSSTSPLMKNSSQRRSSFTRKCARLVKEQRARFYIMRRCVAMLIC 78

[Close]
BLAST of Cla97C08G150430.1 vs. TrEMBL
Match: tr|B9HLH7|B9HLH7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G035900v3 PE=4 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 4.0e-07
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 25 SFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP 61
          SF +RCS LVKEQRARFYILRRCV MLVCW+ Y +P
Sbjct: 19 SFGRRCSSLVKEQRARFYILRRCVTMLVCWHDYGEP 54

[Close]
BLAST of Cla97C08G150430.1 vs. TrEMBL
Match: tr|A0A2J6K821|A0A2J6K821_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_9X64901 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.9e-07
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 2  SEERRRLCKRESSACSRRSSGTAS-----FKQRCSLLVKEQRARFYILRRCVVMLVCWNY 60
          S+  ++L K+ S + SR SS T+S     F ++C+ LVKEQRARFYI+RRCV MLVCW  
Sbjct: 21 SDNNQKLSKKGSISRSRSSSATSSHRRCTFTRKCARLVKEQRARFYIMRRCVSMLVCWRD 80

[Close]
BLAST of Cla97C08G150430.1 vs. TrEMBL
Match: tr|K7NN29|K7NN29_PINTA (Uncharacterized protein (Fragment) OS=Pinus taeda OX=3352 GN=2_3237_01 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.0e-07
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 24 ASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
          +SF +RCS LVKEQRARFYI+RRCV ML+CWN Y D
Sbjct: 23 SSFTRRCSSLVKEQRARFYIMRRCVSMLLCWNKYGD 58

[Close]
BLAST of Cla97C08G150430.1 vs. TrEMBL
Match: tr|A0A1S8ADH2|A0A1S8ADH2_CITLI (DVL family protein OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 25 SFKQRCSLLVKEQRARFYILRRCVVMLVCWN--YYADP 61
          SF +RCS LVKEQRARFYILRRCVVMLVCW+   Y DP
Sbjct: 27 SFGRRCSSLVKEQRARFYILRRCVVMLVCWHDYEYCDP 64

[Close]
BLAST of Cla97C08G150430.1 vs. TrEMBL
Match: tr|A0A0K9NT44|A0A0K9NT44_ZOSMR (ROTUNDIFOLIA like 8 OS=Zostera marina OX=29655 GN=ZOSMA_6G01450 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-06
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 25 SFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
          SF +RCS LVKEQRARFYI+RRC++ML+CW  Y D
Sbjct: 58 SFARRCSSLVKEQRARFYIMRRCIIMLICWREYPD 92

[Close]
BLAST of Cla97C08G150430.1 vs. TAIR10
Match: AT2G39705.1 (ROTUNDIFOLIA like 8)

HSP 1 Score: 56.2 bits (134), Expect = 7.9e-09
Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 0 

Query: 7  RLCKRESSACSRRSSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCW-NYYAD 60
          R     SS+ + +  G  +F ++C+ LVKEQRARFYI+RRCV+ML+CW + Y+D
Sbjct: 33 RSSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRCVIMLICWRDNYSD 86

[Close]
BLAST of Cla97C08G150430.1 vs. TAIR10
Match: AT3G55515.1 (ROTUNDIFOLIA like 7)

HSP 1 Score: 56.2 bits (134), Expect = 7.9e-09
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 17 SRRSSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCW 55
          SR+  G   F ++C  LVKEQRARFYI+RRCVVML+CW
Sbjct: 31 SRQKQGKYGFTRKCGRLVKEQRARFYIMRRCVVMLICW 68

[Close]
BLAST of Cla97C08G150430.1 vs. TAIR10
Match: AT2G36985.1 (DVL family protein)

HSP 1 Score: 51.6 bits (122), Expect = 1.9e-07
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 25 SFKQRCSLLVKEQRARFYILRRCVVMLVCWN 56
          +F Q+CS +VK+QRA+FYILRRC+ MLVCW+
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWH 44

[Close]
BLAST of Cla97C08G150430.1 vs. TAIR10
Match: AT2G29125.1 (ROTUNDIFOLIA like 2)

HSP 1 Score: 49.3 bits (116), Expect = 9.7e-07
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 28  QRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
           Q+ S L KEQ+ARFYI+RRCV MLVCW+ + D
Sbjct: 83  QKYSSLAKEQKARFYIMRRCVAMLVCWHKHGD 114

[Close]
BLAST of Cla97C08G150430.1 vs. TAIR10
Match: AT1G53708.1 (ROTUNDIFOLIA like 9)

HSP 1 Score: 48.1 bits (113), Expect = 2.2e-06
Identity = 21/35 (60.00%), Postives = 24/35 (68.57%), Query Frame = 0 

Query: 25 SFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
          +F  +C+ LVKEQRAR YILRRC  ML CW    D
Sbjct: 13 AFTSKCASLVKEQRARLYILRRCATMLCCWYIQGD 47

The following BLAST results are available for this feature:
BLAST of Cla97C08G150430.1 vs. NCBI nr
Match NameE-valueIdentityDescription
PNT22514.16.1e-0777.78hypothetical protein POPTR_008G035900v3 [Populus trichocarpa][more]
XP_023737243.11.0e-0653.97uncharacterized protein LOC111885195 [Lactuca sativa] >PLY71137.1 hypothetical p... [more]
AEX12455.11.4e-0675.00hypothetical protein 2_3237_01, partial [Pinus taeda] >AEX12456.1 hypothetical p... [more]
KMZ59212.12.3e-0671.43ROTUNDIFOLIA like 8 [Zostera marina][more]
OAY38611.12.3e-0650.00hypothetical protein MANES_10G028700 [Manihot esculenta][more]
BLAST of Cla97C08G150430.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|B9HLH7|B9HLH7_POPTR4.0e-0777.78Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G035900v3 PE=... [more]
tr|A0A2J6K821|A0A2J6K821_LACSA6.9e-0753.97Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_9X64901 PE=4 SV=1[more]
tr|K7NN29|K7NN29_PINTA9.0e-0775.00Uncharacterized protein (Fragment) OS=Pinus taeda OX=3352 GN=2_3237_01 PE=4 SV=1[more]
tr|A0A1S8ADH2|A0A1S8ADH2_CITLI1.2e-0678.95DVL family protein OS=Citrus limon OX=2708 PE=4 SV=1[more]
tr|A0A0K9NT44|A0A0K9NT44_ZOSMR1.5e-0671.43ROTUNDIFOLIA like 8 OS=Zostera marina OX=29655 GN=ZOSMA_6G01450 PE=4 SV=1[more]
BLAST of Cla97C08G150430.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C08G150430.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G39705.17.9e-0950.00ROTUNDIFOLIA like 8[more]
AT3G55515.17.9e-0965.79ROTUNDIFOLIA like 7[more]
AT2G36985.11.9e-0767.74DVL family protein[more]
AT2G29125.19.7e-0765.63ROTUNDIFOLIA like 2[more]
AT1G53708.12.2e-0660.00ROTUNDIFOLIA like 9[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR012552DVL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C08G150430Cla97C08G150430gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C08G150430.1.exon.1Cla97C08G150430.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C08G150430.1.CDS.1Cla97C08G150430.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C08G150430.1Cla97C08G150430.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012552DVLPFAMPF08137DVLcoord: 35..53
e-value: 7.6E-13
score: 48.0
NoneNo IPR availablePANTHERPTHR33102:SF3DVL13-RELATEDcoord: 6..59
NoneNo IPR availablePANTHERPTHR33102FAMILY NOT NAMEDcoord: 6..59