CmaCh15G004760 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh15G004760
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Rotundifolia-like protein
Location	Cma_Chr15 : 2131932 .. 2132123 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAAGAAAGAAGAAGGCTGTGCAGAAGGGAAGTACGCGACTCGTCGTCGGCTTGCAGTAGGAGACCAGCAACGGCGTCGTTTAAGCAGAGATGCAGTTTACTGGTGAAGGAGCAGAGAGCTAGGTTTTACATTCTTCGCCGATGTGTCGTAATGCTCGTGTGTTGGAATTACTATGCTGACCCTTGA

mRNA sequence

ATGATGGAAGAAAGAAGAAGGCTGTGCAGAAGGGAAGTACGCGACTCGTCGTCGGCTTGCAGTAGGAGACCAGCAACGGCGTCGTTTAAGCAGAGATGCAGTTTACTGGTGAAGGAGCAGAGAGCTAGGTTTTACATTCTTCGCCGATGTGTCGTAATGCTCGTGTGTTGGAATTACTATGCTGACCCTTGA

Coding sequence (CDS)

ATGATGGAAGAAAGAAGAAGGCTGTGCAGAAGGGAAGTACGCGACTCGTCGTCGGCTTGCAGTAGGAGACCAGCAACGGCGTCGTTTAAGCAGAGATGCAGTTTACTGGTGAAGGAGCAGAGAGCTAGGTTTTACATTCTTCGCCGATGTGTCGTAATGCTCGTGTGTTGGAATTACTATGCTGACCCTTGA

Protein sequence

MMEERRRLCRREVRDSSSACSRRPATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP

Homology

[Close]

BLAST of CmaCh15G004760 vs. TrEMBL
Match: B9HLH7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s03580g PE=4 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-07
Identity = 34/63 (53.97%), Postives = 39/63 (61.90%), Query Frame = 1


Query: 1  MMEERRRLCRREVRDSSSACSRRPATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYY 60
          M +E    C + VRD            SF +RCS LVKEQRARFYILRRCV MLVCW+ Y
Sbjct: 1  MKQENTGFCSKHVRDPCR---------SFGRRCSSLVKEQRARFYILRRCVTMLVCWHDY 54

Query: 61 ADP 64
           +P
Sbjct: 61 GEP 54

[Close]

BLAST of CmaCh15G004760 vs. TrEMBL
Match: K7NN29_PINTA (Uncharacterized protein (Fragment) OS=Pinus taeda GN=2_3237_01 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-07
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 1


Query: 21 SRRPATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 63
          S  P  +SF +RCS LVKEQRARFYI+RRCV ML+CWN Y D
Sbjct: 17 SSGPVRSSFTRRCSSLVKEQRARFYIMRRCVSMLLCWNKYGD 58

[Close]

BLAST of CmaCh15G004760 vs. TrEMBL
Match: A0A0K9PXY3_ZOSMR (ROTUNDIFOLIA like 8 OS=Zostera marina GN=ZOSMA_13G01210 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-07
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1


Query: 24 PATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 63
          PA +SF ++CS LVKEQRA+FYI+RRCV MLVCW  Y D
Sbjct: 56 PANSSFSKKCSSLVKEQRAKFYIVRRCVTMLVCWRKYRD 94

[Close]

BLAST of CmaCh15G004760 vs. TrEMBL
Match: W9R2B1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025336 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-07
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 1


Query: 8  LCRREVRDSSSACSRRPATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 63
          L +     SSSA SRR    SF ++C+ LVKEQRARFYI+RRCV ML+CW  Y+D
Sbjct: 39 LVKNNSSSSSSAASRR--RCSFTRKCARLVKEQRARFYIMRRCVTMLICWRDYSD 91

[Close]

BLAST of CmaCh15G004760 vs. TrEMBL
Match: M5X652_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024599mg PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.7e-07
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 17 SSACSRRPATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 63
          SS+ SRR    SF ++C+ LVKEQRARFYI+RRCV ML+CWN Y+D
Sbjct: 52 SSSQSRR--RCSFSRKCAKLVKEQRARFYIVRRCVTMLICWNDYSD 95

[Close]

BLAST of CmaCh15G004760 vs. TAIR10
Match: AT2G39705.1 (AT2G39705.1 ROTUNDIFOLIA like 8)

HSP 1 Score: 57.0 bits (136), Expect = 4.9e-09
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 7  RLCRREVRDSSSACSRRPATASFKQRCSLLVKEQRARFYILRRCVVMLVCW-NYYAD 63
          R+ R     SSS   ++    +F ++C+ LVKEQRARFYI+RRCV+ML+CW + Y+D
Sbjct: 30 RITRSSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRCVIMLICWRDNYSD 86

[Close]

BLAST of CmaCh15G004760 vs. TAIR10
Match: AT2G29125.1 (AT2G29125.1 ROTUNDIFOLIA like 2)

HSP 1 Score: 53.5 bits (127), Expect = 5.4e-08
Identity = 30/57 (52.63%), Postives = 37/57 (64.91%), Query Frame = 1


Query: 6   RRLCRREVRDSSSACSRRPATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 63
           R   R+E R SSS+ S      S  Q+ S L KEQ+ARFYI+RRCV MLVCW+ + D
Sbjct: 64  RSFSRKERRSSSSSSS------SITQKYSSLAKEQKARFYIMRRCVAMLVCWHKHGD 114

[Close]

BLAST of CmaCh15G004760 vs. TAIR10
Match: AT3G55515.1 (AT3G55515.1 ROTUNDIFOLIA like 7)

HSP 1 Score: 52.8 bits (125), Expect = 9.2e-08
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 1


Query: 29 FKQRCSLLVKEQRARFYILRRCVVMLVCW 58
          F ++C  LVKEQRARFYI+RRCVVML+CW
Sbjct: 40 FTRKCGRLVKEQRARFYIMRRCVVMLICW 68

[Close]

BLAST of CmaCh15G004760 vs. TAIR10
Match: AT2G36985.1 (AT2G36985.1 DVL family protein)

HSP 1 Score: 51.6 bits (122), Expect = 2.0e-07
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 1


Query: 28 SFKQRCSLLVKEQRARFYILRRCVVMLVCWN 59
          +F Q+CS +VK+QRA+FYILRRC+ MLVCW+
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWH 44

[Close]

BLAST of CmaCh15G004760 vs. TAIR10
Match: AT3G14362.1 (AT3G14362.1 ROTUNDIFOLIA like 10)

HSP 1 Score: 48.1 bits (113), Expect = 2.3e-06
Identity = 21/35 (60.00%), Postives = 24/35 (68.57%), Query Frame = 1


Query: 28 SFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 63
          +F  +C  LVKEQRAR YILRRC  ML CW  + D
Sbjct: 13 AFTSKCVSLVKEQRARLYILRRCATMLCCWYIHGD 47

[Close]

BLAST of CmaCh15G004760 vs. NCBI nr
Match: gi|659113321|ref|XP_008456514.1| (PREDICTED: uncharacterized protein LOC103496443 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 54/63 (85.71%), Postives = 55/63 (87.30%), Query Frame = 1


Query: 1  MMEERRRLCRREVRDSSSACSRRPATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYY 60
          M EE RRLC+R    SSSACSRR  TASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYY
Sbjct: 1  MTEEGRRLCKRT---SSSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYY 60

Query: 61 ADP 64
          ADP
Sbjct: 61 ADP 60

[Close]

BLAST of CmaCh15G004760 vs. NCBI nr
Match: gi|719993720|ref|XP_010253964.1| (PREDICTED: uncharacterized protein LOC104595084 [Nelumbo nucifera])

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-08
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 1


Query: 17 SSACSR--RPATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP 64
          +S CSR  R    SF QRCS LVKEQRARFYILRRCV+MLVCWN   DP
Sbjct: 6  TSFCSRHLRDPCRSFGQRCSRLVKEQRARFYILRRCVIMLVCWNDCGDP 54

[Close]

BLAST of CmaCh15G004760 vs. NCBI nr
Match: gi|566182182|ref|XP_002311997.2| (hypothetical protein POPTR_0008s03580g [Populus trichocarpa])

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-07
Identity = 34/63 (53.97%), Postives = 39/63 (61.90%), Query Frame = 1


Query: 1  MMEERRRLCRREVRDSSSACSRRPATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYY 60
          M +E    C + VRD            SF +RCS LVKEQRARFYILRRCV MLVCW+ Y
Sbjct: 1  MKQENTGFCSKHVRDPCR---------SFGRRCSSLVKEQRARFYILRRCVTMLVCWHDY 54

Query: 61 ADP 64
           +P
Sbjct: 61 GEP 54

[Close]

BLAST of CmaCh15G004760 vs. NCBI nr
Match: gi|367066086|gb|AEX12455.1| (hypothetical protein 2_3237_01, partial [Pinus taeda])

HSP 1 Score: 62.8 bits (151), Expect = 2.5e-07
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 1


Query: 21 SRRPATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 63
          S  P  +SF +RCS LVKEQRARFYI+RRCV ML+CWN Y D
Sbjct: 17 SSGPVRSSFTRRCSSLVKEQRARFYIMRRCVSMLLCWNKYGD 58

[Close]

BLAST of CmaCh15G004760 vs. NCBI nr
Match: gi|703099220|ref|XP_010096589.1| (hypothetical protein L484_025336 [Morus notabilis])

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-07
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 1


Query: 8  LCRREVRDSSSACSRRPATASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 63
          L +     SSSA SRR    SF ++C+ LVKEQRARFYI+RRCV ML+CW  Y+D
Sbjct: 39 LVKNNSSSSSSAASRR--RCSFTRKCARLVKEQRARFYIMRRCVTMLICWRDYSD 91

The following BLAST results are available for this feature:

BLAST of CmaCh15G004760 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh15G004760 vs. TrEMBL


Match Name	E-value	Identity	Description
B9HLH7_POPTR	1.3e-07	53.97	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s03580g PE=4 SV=2	[more]
K7NN29_PINTA	1.8e-07	69.05	Uncharacterized protein (Fragment) OS=Pinus taeda GN=2_3237_01 PE=4 SV=1	[more]
A0A0K9PXY3_ZOSMR	2.3e-07	69.23	ROTUNDIFOLIA like 8 OS=Zostera marina GN=ZOSMA_13G01210 PE=4 SV=1	[more]
W9R2B1_9ROSA	2.3e-07	58.18	Uncharacterized protein OS=Morus notabilis GN=L484_025336 PE=4 SV=1	[more]
M5X652_PRUPE	6.7e-07	65.22	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024599mg PE=4 SV=1	[more]

BLAST of CmaCh15G004760 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G39705.1	4.9e-09	49.12	ROTUNDIFOLIA like 8	[more]
AT2G29125.1	5.4e-08	52.63	ROTUNDIFOLIA like 2	[more]
AT3G55515.1	9.2e-08	75.86	ROTUNDIFOLIA like 7	[more]
AT2G36985.1	2.0e-07	67.74	DVL family protein	[more]
AT3G14362.1	2.3e-06	60.00	ROTUNDIFOLIA like 10	[more]

BLAST of CmaCh15G004760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113321\|ref\|XP_008456514.1\|	1.3e-19	85.71	PREDICTED: uncharacterized protein LOC103496443 [Cucumis melo]	[more]
gi\|719993720\|ref\|XP_010253964.1\|	1.0e-08	71.43	PREDICTED: uncharacterized protein LOC104595084 [Nelumbo nucifera]	[more]
gi\|566182182\|ref\|XP_002311997.2\|	1.9e-07	53.97	hypothetical protein POPTR_0008s03580g [Populus trichocarpa]	[more]
gi\|367066086\|gb\|AEX12455.1\|	2.5e-07	69.05	hypothetical protein 2_3237_01, partial [Pinus taeda]	[more]
gi\|703099220\|ref\|XP_010096589.1\|	3.3e-07	58.18	hypothetical protein L484_025336 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012552	DVL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G004760.1	CmaCh15G004760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 38..56 score: 1.0
None	No IPR available	PANTHER	PTHR33102	FAMILY NOT NAMED	coord: 28..62 score: 7.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh15G004760	Cucsa.137510	Cucumber (Gy14) v1	cgycmaB0382
CmaCh15G004760	Cla013753	Watermelon (97103) v1	cmawmB258
CmaCh15G004760	MELO3C019818	Melon (DHL92) v3.5.1	cmameB273
CmaCh15G004760	ClCG08G007660	Watermelon (Charleston Gray)	cmawcgB271
CmaCh15G004760	CmoCh15G004850	Cucurbita moschata (Rifu)	cmacmoB287
CmaCh15G004760	CmoCh04G026810	Cucurbita moschata (Rifu)	cmacmoB308
CmaCh15G004760	Cp4.1LG13g10050	Cucurbita pepo (Zucchini)	cmacpeB305
CmaCh15G004760	Cp4.1LG01g24470	Cucurbita pepo (Zucchini)	cmacpeB317
CmaCh15G004760	MELO3C019818.2	Melon (DHL92) v3.6.1	cmamedB313
CmaCh15G004760	CsaV3_6G036630	Cucumber (Chinese Long) v3	cmacucB0366
CmaCh15G004760	Cla97C08G150430	Watermelon (97103) v2	cmawmbB317
CmaCh15G004760	Bhi04G001072	Wax gourd	cmawgoB0399
CmaCh15G004760	Carg02420	Silver-seed gourd	carcmaB0362

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh15G004760	Silver-seed gourd	carcmaB0961
CmaCh15G004760	Silver-seed gourd	carcmaB1163
CmaCh15G004760	Cucumber (Chinese Long) v3	cmacucB0359
CmaCh15G004760	Cucurbita maxima (Rimu)	cmacmaB324
CmaCh15G004760	Cucumber (Gy14) v1	cgycmaB0848
CmaCh15G004760	Watermelon (97103) v1	cmawmB267
CmaCh15G004760	Cucurbita moschata (Rifu)	cmacmoB305
CmaCh15G004760	Wild cucumber (PI 183967)	cmacpiB309
CmaCh15G004760	Wild cucumber (PI 183967)	cmacpiB318
CmaCh15G004760	Cucumber (Chinese Long) v2	cmacuB305
CmaCh15G004760	Cucumber (Chinese Long) v2	cmacuB312
CmaCh15G004760	Melon (DHL92) v3.5.1	cmameB263
CmaCh15G004760	Watermelon (Charleston Gray)	cmawcgB263
CmaCh15G004760	Cucurbita pepo (Zucchini)	cmacpeB313
CmaCh15G004760	Bottle gourd (USVL1VR-Ls)	cmalsiB279
CmaCh15G004760	Bottle gourd (USVL1VR-Ls)	cmalsiB295
CmaCh15G004760	Cucumber (Gy14) v2	cgybcmaB615
CmaCh15G004760	Cucumber (Gy14) v2	cgybcmaB744
CmaCh15G004760	Melon (DHL92) v3.6.1	cmamedB297