CsaV3_6G036630.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G036630.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRotundifolia-like protein
Locationchr6 : 20430574 .. 20431386 (+)
Sequence length183
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCAAGCAATGAACATTCGGGATTAGAATAAAACCACAAATTCTCGAACTCCTCATATTTCATCAACTAATATCATATTCACACACATCATAATATATTATATTATTATTTTACACTATTCCCAAACACAAAATCACAAAATCCCATCATTCTTTTTTATCACAATATTTAATTATTCCCACCCCCCCCAAAAAAAAAACCCATATATTATTACTATAAAAGAAAGAAACTCCCAATCCCCTCAAACCAAAACTTTCTCATTCTTCTCTCACAACTCCAAAACATCTTCTACTTCTACAAAACTAAATCCAGTCTCTCTTCTTCTTTCTCCTCTCTAAAAAAGTTCCAAACAAAAGGAAAAGGGCATTATAGTAAAATGACGGAAGAAAGAAGAAGGCTATGCAAGAGAACACCGTCGTCCGCTTGTAGTAGGAGATCGGGAACGGCGTCGTTTAAGCAGAGGTGTAGTTTGCTTGTGAAGGAACAAAGAGCTAGGTTTTACATTCTTCGCCGATGTGTCGTCATGCTCGTCTGTTGGAATTACTATGCTGACCCTTGATTTTTTTTTTCTTTTTTCTTTTTTGTATATAGTTTTATTAGCCAATACCCATTATTAACTTTGGAGGTTTTTTTTTCCTTTTCTTTTTGTTTTGTTTTTCTTTTTAATTTTTATATTGGCCTAGCTACCTGTGATTTGGAAAGAACAATTAGATATATTTTATAGTATATTCCTTTTAAAATTTTATACAAGTTTTGGTATATTTCAATATCACATCTCTTTCATTAATTAATATTATTCCCACTCTCTTTTTC

mRNA sequence

ATGACGGAAGAAAGAAGAAGGCTATGCAAGAGAACACCGTCGTCCGCTTGTAGTAGGAGATCGGGAACGGCGTCGTTTAAGCAGAGGTGTAGTTTGCTTGTGAAGGAACAAAGAGCTAGGTTTTACATTCTTCGCCGATGTGTCGTCATGCTCGTCTGTTGGAATTACTATGCTGACCCTTGA

Coding sequence (CDS)

ATGACGGAAGAAAGAAGAAGGCTATGCAAGAGAACACCGTCGTCCGCTTGTAGTAGGAGATCGGGAACGGCGTCGTTTAAGCAGAGGTGTAGTTTGCTTGTGAAGGAACAAAGAGCTAGGTTTTACATTCTTCGCCGATGTGTCGTCATGCTCGTCTGTTGGAATTACTATGCTGACCCTTGA

Protein sequence

MTEERRRLCKRTPSSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP
Homology
[Close]
BLAST of CsaV3_6G036630.1 vs. NCBI nr
Match: OAY38885.1 (hypothetical protein MANES_10G049900 [Manihot esculenta])

HSP 1 Score: 65.5 bits (158), Expect = 7.3e-08
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 0 

Query: 10 KRTPSSACSR--RSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
          K+  +S C+R  R    SF Q+CS LVKEQRA+FYILRRC+VML+CWN Y D
Sbjct: 2  KQENTSFCNRHVRDPCRSFGQKCSRLVKEQRAKFYILRRCIVMLICWNEYGD 53

[Close]
BLAST of CsaV3_6G036630.1 vs. NCBI nr
Match: PNT22514.1 (hypothetical protein POPTR_008G035900v3 [Populus trichocarpa])

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-07
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 0 

Query: 10 KRTPSSACSR--RSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP 61
          K+  +  CS+  R    SF +RCS LVKEQRARFYILRRCV MLVCW+ Y +P
Sbjct: 2  KQENTGFCSKHVRDPCRSFGRRCSSLVKEQRARFYILRRCVTMLVCWHDYGEP 54

[Close]
BLAST of CsaV3_6G036630.1 vs. NCBI nr
Match: PON42568.1 (DEVIL-like protein [Trema orientalis])

HSP 1 Score: 62.8 bits (151), Expect = 4.7e-07
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 17 CSR--RSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP 61
          C+R  R    SF +RCSLLVKEQRARFYILRRC+ ML+CW+   DP
Sbjct: 28 CTRHVRDPCRSFGRRCSLLVKEQRARFYILRRCITMLLCWHERGDP 73

[Close]
BLAST of CsaV3_6G036630.1 vs. NCBI nr
Match: AEX12455.1 (hypothetical protein 2_3237_01, partial [Pinus taeda] >AEX12456.1 hypothetical protein 2_3237_01, partial [Pinus taeda] >AEX12457.1 hypothetical protein 2_3237_01, partial [Pinus taeda] >AEX12458.1 hypothetical protein 2_3237_01, partial [Pinus taeda] >AEX12459.1 hypothetical protein 2_3237_01, partial [Pinus taeda])

HSP 1 Score: 62.0 bits (149), Expect = 8.1e-07
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 24 ASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
          +SF +RCS LVKEQRARFYI+RRCV ML+CWN Y D
Sbjct: 23 SSFTRRCSSLVKEQRARFYIMRRCVSMLLCWNKYGD 58

[Close]
BLAST of CsaV3_6G036630.1 vs. NCBI nr
Match: PON32315.1 (DEVIL-like protein [Parasponia andersonii])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 17 CSR--RSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP 61
          C+R  R    SF +RCSLLVK+QRARFYILRRC+ ML+CW+   DP
Sbjct: 20 CTRHVRDPCRSFGRRCSLLVKDQRARFYILRRCITMLLCWHERGDP 65

[Close]
BLAST of CsaV3_6G036630.1 vs. TAIR10
Match: AT2G39705.1 (ROTUNDIFOLIA like 8)

HSP 1 Score: 57.4 bits (137), Expect = 3.6e-09
Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 0 

Query: 7  RLCKRTPSSACSRRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCW-NYYAD 60
          R    + SS   ++ G  +F ++C+ LVKEQRARFYI+RRCV+ML+CW + Y+D
Sbjct: 33 RSSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRCVIMLICWRDNYSD 86

[Close]
BLAST of CsaV3_6G036630.1 vs. TAIR10
Match: AT3G55515.1 (ROTUNDIFOLIA like 7)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-08
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 19 RRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCW 55
          ++ G   F ++C  LVKEQRARFYI+RRCVVML+CW
Sbjct: 33 QKQGKYGFTRKCGRLVKEQRARFYIMRRCVVMLICW 68

[Close]
BLAST of CsaV3_6G036630.1 vs. TAIR10
Match: AT2G36985.1 (DVL family protein)

HSP 1 Score: 52.0 bits (123), Expect = 1.5e-07
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 25 SFKQRCSLLVKEQRARFYILRRCVVMLVCWN 56
          +F Q+CS +VK+QRA+FYILRRC+ MLVCW+
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWH 44

[Close]
BLAST of CsaV3_6G036630.1 vs. TAIR10
Match: AT2G29125.1 (ROTUNDIFOLIA like 2)

HSP 1 Score: 50.1 bits (118), Expect = 5.8e-07
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 28  QRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
           Q+ S L KEQ+ARFYI+RRCV MLVCW+ + D
Sbjct: 83  QKYSSLAKEQKARFYIMRRCVAMLVCWHKHGD 114

[Close]
BLAST of CsaV3_6G036630.1 vs. TAIR10
Match: AT1G53708.1 (ROTUNDIFOLIA like 9)

HSP 1 Score: 48.9 bits (115), Expect = 1.3e-06
Identity = 21/35 (60.00%), Postives = 24/35 (68.57%), Query Frame = 0 

Query: 25 SFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
          +F  +C+ LVKEQRAR YILRRC  ML CW    D
Sbjct: 13 AFTSKCASLVKEQRARLYILRRCATMLCCWYIQGD 47

[Close]
BLAST of CsaV3_6G036630.1 vs. TrEMBL
Match: tr|A0A2C9V3J5|A0A2C9V3J5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G049900 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.8e-08
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 0 

Query: 10 KRTPSSACSR--RSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYAD 60
          K+  +S C+R  R    SF Q+CS LVKEQRA+FYILRRC+VML+CWN Y D
Sbjct: 2  KQENTSFCNRHVRDPCRSFGQKCSRLVKEQRAKFYILRRCIVMLICWNEYGD 53

[Close]
BLAST of CsaV3_6G036630.1 vs. TrEMBL
Match: tr|B9HLH7|B9HLH7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G035900v3 PE=4 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-07
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 0 

Query: 10 KRTPSSACSR--RSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP 61
          K+  +  CS+  R    SF +RCS LVKEQRARFYILRRCV MLVCW+ Y +P
Sbjct: 2  KQENTGFCSKHVRDPCRSFGRRCSSLVKEQRARFYILRRCVTMLVCWHDYGEP 54

[Close]
BLAST of CsaV3_6G036630.1 vs. TrEMBL
Match: tr|A0A2P5B186|A0A2P5B186_9ROSA (DEVIL-like protein OS=Trema orientalis OX=63057 GN=TorDVL8 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-07
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 17 CSR--RSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYADP 61
          C+R  R    SF +RCSLLVKEQRARFYILRRC+ ML+CW+   DP
Sbjct: 28 CTRHVRDPCRSFGRRCSLLVKEQRARFYILRRCITMLLCWHERGDP 73

[Close]
BLAST of CsaV3_6G036630.1 vs. TrEMBL
Match: tr|M0TCK0|M0TCK0_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-07
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 19 RRSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWNYYA 59
          RRS T SF +RC+ LVKEQRARFYI+RRCVV+L+CW  Y+
Sbjct: 19 RRSMTQSFSRRCASLVKEQRARFYIMRRCVVLLICWRDYS 58

[Close]
BLAST of CsaV3_6G036630.1 vs. TrEMBL
Match: tr|A0A1S8ADH2|A0A1S8ADH2_CITLI (DVL family protein OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-07
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 0 

Query: 1  MTEERRRLCKRTPSSACSR--RSGTASFKQRCSLLVKEQRARFYILRRCVVMLVCWN--Y 60
          M  ++      T +  CS+  R    SF +RCS LVKEQRARFYILRRCVVMLVCW+   
Sbjct: 1  MNNKQENTAASTAAGFCSKHLRKPCRSFGRRCSSLVKEQRARFYILRRCVVMLVCWHDYE 60

The following BLAST results are available for this feature:
BLAST of CsaV3_6G036630.1 vs. NCBI nr
Match NameE-valueIdentityDescription
OAY38885.17.3e-0861.54hypothetical protein MANES_10G049900 [Manihot esculenta][more]
PNT22514.13.6e-0760.38hypothetical protein POPTR_008G035900v3 [Populus trichocarpa][more]
PON42568.14.7e-0765.22DEVIL-like protein [Trema orientalis][more]
AEX12455.18.1e-0775.00hypothetical protein 2_3237_01, partial [Pinus taeda] >AEX12456.1 hypothetical p... [more]
PON32315.11.1e-0663.04DEVIL-like protein [Parasponia andersonii][more]
BLAST of CsaV3_6G036630.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G39705.13.6e-0950.00ROTUNDIFOLIA like 8[more]
AT3G55515.12.3e-0863.89ROTUNDIFOLIA like 7[more]
AT2G36985.11.5e-0767.74DVL family protein[more]
AT2G29125.15.8e-0765.63ROTUNDIFOLIA like 2[more]
AT1G53708.11.3e-0660.00ROTUNDIFOLIA like 9[more]
BLAST of CsaV3_6G036630.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G036630.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2C9V3J5|A0A2C9V3J5_MANES4.8e-0861.54Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G049900 PE=4 SV=... [more]
tr|B9HLH7|B9HLH7_POPTR2.4e-0760.38Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G035900v3 PE=... [more]
tr|A0A2P5B186|A0A2P5B186_9ROSA3.1e-0765.22DEVIL-like protein OS=Trema orientalis OX=63057 GN=TorDVL8 PE=4 SV=1[more]
tr|M0TCK0|M0TCK0_MUSAM3.1e-0770.00Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1[more]
tr|A0A1S8ADH2|A0A1S8ADH2_CITLI4.1e-0754.69DVL family protein OS=Citrus limon OX=2708 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR012552DVL
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_6G036630CsaV3_6G036630gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G036630.1.exon1CsaV3_6G036630.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G036630.1.cds1CsaV3_6G036630.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_6G036630.1CsaV3_6G036630.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012552DVLPFAMPF08137DVLcoord: 35..53
e-value: 7.6E-13
score: 48.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR33102:SF3DVL13-RELATEDcoord: 9..59
NoneNo IPR availablePANTHERPTHR33102FAMILY NOT NAMEDcoord: 9..59