CsaV3_6G006410 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G006410
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTubulin-specific chaperone A
Locationchr6 : 5351683 .. 5354610 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTCATCTTGTATTGATTCACAAATCATCCACGTGTAGTGACTAAATTCTAAAATATGTGACTATTCAATCTCTGAGATGAAAAATTCCATCAAATTAAGTCTTAAATTACTTTAATTCATGCGCTATTAACTTTGGTTTATTTTAGTGTCACACTCTTGAAAAGAAACTACTAGCTTCATTCCAAAGAGAAAACTAACAGGGTCAATTTTTTTGAAGGACCAAAGAGACATTTTCAAATCTGAAAGTACCAAAGAATCTACCAATTATTGTGGCAGCTCTGCGGTTGGCTCAAGTATTCTCACTTTAAAGTTCTTCTTCTTCACGGGAAAAAACACCTCCCACGCTCTCTCTCTGCGCGCCGCTCAACTTGCCGGATCTCCCTCTCACTCTAGCGATTATCTCTCTCGCCGGACGTCGACTCCCAGCTGTGCACGTACGAACTCCCTCCCGGCCGCGTTTCTTCCGTCTATACCGCCAAACCCGAGCACTGGTTTTTCTGGCTCGCCCCCTGCTATTCTTTGCGCCGCTGGGTCTTATCGTCGCTATTCTCACCGGATCTTGGCTTTGGGGTAAGATTTATTTGATGTGGTTGGGTTTTGTGGAAGATTTTTGAACACCCATTGAACGTTGGCTTCTTCAAATTAGTGATACCCTTAGATGTTCGGTTTGATGCTAAATTTACTCATGATTTTGAAATGCTAGAATTCGAATTAGAAGAATGTTAGTGGGCTGCTCACGAAGTTAAGACGAACTTTTGCAGTGTTGGGTAATTTTAGTGAGTTTTCATAGAGTGTTATTGAATACCCATAATTTTTTTTTTACCCAAATTGATTGACGTTCTTCGTGTTTCGGCTTTAGATTCAAAATTTGGAGAACATTAATGTACTATCCAGCGGGTTACGATTAATGTTGGGAAGATTTTGGTTAAAACGAAGTGGGTAGAGCTTATAATCCCATAAGATCAAGCCATTGACAGTGGGTGGTTTATTTGTAAGTTGTTTGGGATCGGGATGATACTTGAGGGTGTCTGTACACTCTGTAGTTTGGATATCGTAAGTCCTAGAAATGAAAACTTCACCTCTTTTTCAGGAGTGGTTAATCAATTATTTAACAGCCCCTACTCCCTTGTTTTAGAAAAGTGTTTTTAGATAGTGTCTTGTCATAGATCCAGGTTAGAAAGATAATCTGAAATGGCTTATGACAACTTACCTCCATGATACAAGAAATTTCGTGGAAAAGCTGACGTTGAGAACATGCTCCCAGTCTGAATTTTCAATAGCATCCAGGGGTTTAAGATAGAATGTGTACTAATTAATTACCATGAATTCCCACGACCCTTAACAAACTTTAAGAATATGATAACATTGTTTCATAATGGAGCCCCAATTTTCATGCTTTTATGGGAACTGAGAAGCAAAATATTGTCTCTCTTAGAAGCTTCAATTCGGTGAATTAGGTTTATCCTAACTGGGAGACTTGTGGATTCCAAATCCATGATAAATGCTTTTGGTGATAGGTCAGTATGGCTACTGTAAAGAACCTTAAAATTAAGACAGCTACCTGCAAACGCATTCTCAAGGAGTTGTTTTCTTATGAGAAGGAGGTTGAGAGAGAAGCTGCCAAAACTGCTGACATGAAAGAAAAAGGTGCTGACCCTTATGACCTTAAACAACAGGTATGTAAGTAGTGGGTTGTATTCTTAATAATCAAAACTTCAAAAGTTGATAATTATTTGCTTTGACTGCTTGTGGATTTGTTTGTGCCATCTGAAGACCTTAAATAGAAATTCTTAGACATTCAAAAATATAAATTTTTTACCTTAAACAACAGGTATGTAAATGATTTGCATTCTTAATAATCAAAAGTTTGTATGATTATTGTCTGCTTGACTGCTTGTGGATTTGTTTGTGCCATCATTGAGTGAATATATTAAGAAGGATTTTAGCCATTCAAAACCTTTTAATAGACAGAAATCTCCAACATTACACAATAGGAACAATCAAATTTGTGAGCTTAAAGATAAGCGTTTTAAACTAAAAAAAAGAATAATAATATTGTTGAATTTGGAACTTAGAGATGGTTTTCAGGGTAGGACTTTAGCAATTGTTTTTAAGCCTTTAAATTTCTTGTTGCCGTTGAACTTTATTCTAGATATAGAATCAAAACGACTAAAATTTTATTTAGGATAATGGAGATTGGATGTAATGCCATCATCATACAAATCTTCTTCTTCAATTGGTTAAGTATTTTATTACGATTTTACAATTAGCATTCTCATTATAATTAGGAAAATGTGCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTAGAGTTTGCCTTAGCTGATCTGAAAGATGCCCTGGTATCAATAATCATTACCTTCACTTTTCATTCTTCCCATTCTTGCACTTCTGAGGAAAGCTTGATATGAAGGTTATCTGAATAATCATTTTTTCATCTTCTTCATCTACAGGCTGAACTGGAAAAATCAACACAAGAGAAAGGTCCAGAGTTCGACGATGCTCGGAGTACAATCAACGATGTTGAAAGTTTCCTAAAGCCAATAGAGGAATTGTGTAGTGGGTCTGTCACCGCCTGATTGTTTTCAGAAGTTATAATTCAAACTATTGCTTTATTACAGTATTAGTTTTCAATGTTTGGTTTTTGGATGTTATGGTTATACTTTGGAAAGAGTTTCTTCTTCTGTTCTTCATTACTATCACCCAAGTGTAAGACTAAACTCTTCTTCTGTTCTACGTAAGCGTTAATGATGATTAATATGAGAGTTTGGTAACTAAAATAAAT

mRNA sequence

ATGGCTACTGTAAAGAACCTTAAAATTAAGACAGCTACCTGCAAACGCATTCTCAAGGAGTTGTTTTCTTATGAGAAGGAGGTTGAGAGAGAAGCTGCCAAAACTGCTGACATGAAAGAAAAAGGTGCTGACCCTTATGACCTTAAACAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTAGAGTTTGCCTTAGCTGATCTGAAAGATGCCCTGGCTGAACTGGAAAAATCAACACAAGAGAAAGGTCCAGAGTTCGACGATGCTCGGAGTACAATCAACGATGTTGAAAGTTTCCTAAAGCCAATAGAGGAATTGTGTAGTGGGTCTGTCACCGCCTGA

Coding sequence (CDS)

ATGGCTACTGTAAAGAACCTTAAAATTAAGACAGCTACCTGCAAACGCATTCTCAAGGAGTTGTTTTCTTATGAGAAGGAGGTTGAGAGAGAAGCTGCCAAAACTGCTGACATGAAAGAAAAAGGTGCTGACCCTTATGACCTTAAACAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTAGAGTTTGCCTTAGCTGATCTGAAAGATGCCCTGGCTGAACTGGAAAAATCAACACAAGAGAAAGGTCCAGAGTTCGACGATGCTCGGAGTACAATCAACGATGTTGAAAGTTTCCTAAAGCCAATAGAGGAATTGTGTAGTGGGTCTGTCACCGCCTGA

Protein sequence

MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEELCSGSVTA
Homology
[Close]
BLAST of CsaV3_6G006410 vs. NCBI nr
Match: XP_004145016.1 (PREDICTED: tubulin-folding cofactor A [Cucumis sativus] >XP_011656707.1 PREDICTED: tubulin-folding cofactor A [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 3.1e-58
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEELCSGSVT 120
           MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEELCSGSVT
Sbjct: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEELCSGSVT 120

Query: 121 A 122
           A
Sbjct: 121 A 121

[Close]
BLAST of CsaV3_6G006410 vs. NCBI nr
Match: KGN46266.1 (hypothetical protein Csa_6G078610 [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 3.1e-58
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 129 MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 188

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEELCSGSVT 120
           MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEELCSGSVT
Sbjct: 189 MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEELCSGSVT 248

Query: 121 A 122
           A
Sbjct: 249 A 249

[Close]
BLAST of CsaV3_6G006410 vs. NCBI nr
Match: XP_008460084.1 (PREDICTED: tubulin-folding cofactor A [Cucumis melo] >XP_008460085.1 PREDICTED: tubulin-folding cofactor A [Cucumis melo])

HSP 1 Score: 208.0 bits (528), Expect = 1.8e-50
Identity = 106/113 (93.81%), Postives = 111/113 (98.23%), Query Frame = 0 

Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRILKELFSYEKEVEREA+KTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREASKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEE 114
           MVPDCHKRLE ALADLK+ALA+LEKST+EKGPEFDDARSTIND+ESFLKP EE
Sbjct: 61  MVPDCHKRLEVALADLKEALADLEKSTEEKGPEFDDARSTINDIESFLKPTEE 113

[Close]
BLAST of CsaV3_6G006410 vs. NCBI nr
Match: XP_022155762.1 (tubulin-folding cofactor A [Momordica charantia])

HSP 1 Score: 193.0 bits (489), Expect = 6.1e-46
Identity = 99/113 (87.61%), Postives = 108/113 (95.58%), Query Frame = 0 

Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATV+NLKIKTATCKRI+KEL SYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVRNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEE 114
           M+PDCHKRLE +LADLK ALAELE+STQEKGPEFD+ARSTI++VE+FLK  EE
Sbjct: 61  MIPDCHKRLEASLADLKGALAELEESTQEKGPEFDNARSTISEVENFLKTTEE 113

[Close]
BLAST of CsaV3_6G006410 vs. NCBI nr
Match: XP_023006149.1 (tubulin-folding cofactor A [Cucurbita maxima] >XP_023006150.1 tubulin-folding cofactor A [Cucurbita maxima] >XP_023006151.1 tubulin-folding cofactor A [Cucurbita maxima] >XP_023006152.1 tubulin-folding cofactor A [Cucurbita maxima])

HSP 1 Score: 190.7 bits (483), Expect = 3.0e-45
Identity = 100/113 (88.50%), Postives = 103/113 (91.15%), Query Frame = 0 

Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRI+KEL SYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEE 114
           MVPDCHKRLE ALADLK  L ELEKSTQ KGPEFDDARS I ++ESFLK  EE
Sbjct: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE 113

[Close]
BLAST of CsaV3_6G006410 vs. TAIR10
Match: AT2G30410.1 (tubulin folding cofactor A (KIESEL))

HSP 1 Score: 166.4 bits (420), Expect = 1.1e-41
Identity = 82/105 (78.10%), Postives = 96/105 (91.43%), Query Frame = 0 

Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT++NLKIKT+TCKRI+KEL SYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 60

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVE 106
           M+PDCHKRLE ALADLK  LAELE++ +++GPE +DA+ T+ DVE
Sbjct: 61  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVE 105

[Close]
BLAST of CsaV3_6G006410 vs. Swiss-Prot
Match: sp|O04350|TBCA_ARATH (Tubulin-folding cofactor A OS=Arabidopsis thaliana OX=3702 GN=TFCA PE=1 SV=2)

HSP 1 Score: 166.4 bits (420), Expect = 2.0e-40
Identity = 82/105 (78.10%), Postives = 96/105 (91.43%), Query Frame = 0 

Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT++NLKIKT+TCKRI+KEL SYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 60

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVE 106
           M+PDCHKRLE ALADLK  LAELE++ +++GPE +DA+ T+ DVE
Sbjct: 61  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVE 105

[Close]
BLAST of CsaV3_6G006410 vs. Swiss-Prot
Match: sp|P80585|TBCA_CHICK (Tubulin-specific chaperone A OS=Gallus gallus OX=9031 GN=TBCA PE=1 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 5.5e-14
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 0 

Query: 4   VKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           ++ +KIKT   KR+ KE   YEKE +++  K   MK +  D Y +K+Q  +L ESRMM+P
Sbjct: 6   LRQIKIKTGVVKRLAKEKVMYEKEAKQQEEKIEKMKAEACDDYGIKKQAEILQESRMMIP 65

Query: 64  DCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVE 106
           DC +RLE A ADL   L E EK  +E   E+ +ARS +  V+
Sbjct: 66  DCQRRLEIAHADLTQ-LLENEKELEE-AEEYKEARSILESVK 105

[Close]
BLAST of CsaV3_6G006410 vs. Swiss-Prot
Match: sp|O75347|TBCA_HUMAN (Tubulin-specific chaperone A OS=Homo sapiens OX=9606 GN=TBCA PE=1 SV=3)

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-13
Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = 0 

Query: 4   VKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           V+ +KIKT   KR++KE   YEKE +++  K   M+ +  + YD+K+Q  +L ESRMM+P
Sbjct: 6   VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIP 65

Query: 64  DCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVE 106
           DC +RLE A  DL+  L E EK  +E   E+ +AR  ++ V+
Sbjct: 66  DCQRRLEAAYLDLQRIL-ENEKDLEE-AEEYKEARLVLDSVK 105

[Close]
BLAST of CsaV3_6G006410 vs. Swiss-Prot
Match: sp|Q6PEC1|TBCA_RAT (Tubulin-specific chaperone A OS=Rattus norvegicus OX=10116 GN=Tbca PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-13
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 4   VKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           V+ +KIKT   KR++KE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMM+P
Sbjct: 6   VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65

Query: 64  DCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVE 106
           DC +RLE A  DL+  L E EK  +E   E+ +AR  ++ V+
Sbjct: 66  DCQRRLEAAYTDLRQIL-ESEKDLEE-AEEYKEARIVLDSVK 105

[Close]
BLAST of CsaV3_6G006410 vs. Swiss-Prot
Match: sp|P48428|TBCA_MOUSE (Tubulin-specific chaperone A OS=Mus musculus OX=10090 GN=Tbca PE=1 SV=3)

HSP 1 Score: 74.7 bits (182), Expect = 7.9e-13
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 4   VKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           V+ +KIKT   +R++KE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMM+P
Sbjct: 6   VRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65

Query: 64  DCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVE 106
           DC +RLE A  DL+  L E EK  +E   E+ +AR  ++ V+
Sbjct: 66  DCQRRLEAAYTDLQQIL-ESEKDLEE-AEEYKEARVVLDSVK 105

[Close]
BLAST of CsaV3_6G006410 vs. TrEMBL
Match: tr|A0A0A0KER0|A0A0A0KER0_CUCSA (Tubulin-specific chaperone A OS=Cucumis sativus OX=3659 GN=Csa_6G078610 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.1e-58
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 129 MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 188

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEELCSGSVT 120
           MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEELCSGSVT
Sbjct: 189 MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEELCSGSVT 248

Query: 121 A 122
           A
Sbjct: 249 A 249

[Close]
BLAST of CsaV3_6G006410 vs. TrEMBL
Match: tr|A0A1S3CBQ5|A0A1S3CBQ5_CUCME (Tubulin-specific chaperone A OS=Cucumis melo OX=3656 GN=LOC103499001 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.2e-50
Identity = 106/113 (93.81%), Postives = 111/113 (98.23%), Query Frame = 0 

Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRILKELFSYEKEVEREA+KTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREASKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEE 114
           MVPDCHKRLE ALADLK+ALA+LEKST+EKGPEFDDARSTIND+ESFLKP EE
Sbjct: 61  MVPDCHKRLEVALADLKEALADLEKSTEEKGPEFDDARSTINDIESFLKPTEE 113

[Close]
BLAST of CsaV3_6G006410 vs. TrEMBL
Match: tr|A0A0B0MLK3|A0A0B0MLK3_GOSAR (Tubulin-specific chaperone A OS=Gossypium arboreum OX=29729 GN=F383_26345 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 5.1e-41
Identity = 90/112 (80.36%), Postives = 101/112 (90.18%), Query Frame = 0 

Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATV+NLKIKT+TCKRILKEL SYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVRNLKIKTSTCKRILKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIE 113
           MVPDCHKRLE +LADLK  LAELE++ +++GPEF+DARSTI +VE   +  E
Sbjct: 61  MVPDCHKRLEASLADLKATLAELEEANEKEGPEFEDARSTITEVEKLFQTTE 112

[Close]
BLAST of CsaV3_6G006410 vs. TrEMBL
Match: tr|A0A2P5YEY3|A0A2P5YEY3_GOSBA (Tubulin-specific chaperone A OS=Gossypium barbadense OX=3634 GN=GOBAR_AA06454 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 5.1e-41
Identity = 90/112 (80.36%), Postives = 101/112 (90.18%), Query Frame = 0 

Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATV+NLKIKT+TCKRILKEL SYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVRNLKIKTSTCKRILKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIE 113
           MVPDCHKRLE +LADLK  LAELE++ +++GPEF+DARSTI +VE   +  E
Sbjct: 61  MVPDCHKRLEASLADLKATLAELEEANEKEGPEFEDARSTITEVEKLFQTTE 112

[Close]
BLAST of CsaV3_6G006410 vs. TrEMBL
Match: tr|A0A1U8PW82|A0A1U8PW82_GOSHI (Tubulin-specific chaperone A OS=Gossypium hirsutum OX=3635 GN=LOC107963369 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.1e-40
Identity = 89/112 (79.46%), Postives = 101/112 (90.18%), Query Frame = 0 

Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATV+NLKIKT+TCKRI+KEL SYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIE 113
           MVPDCHKRLE +LADLK  LAELE++ +++GPEF+DARSTI +VE   +  E
Sbjct: 61  MVPDCHKRLEASLADLKATLAELEEANEKEGPEFEDARSTITEVEKLFQTTE 112

The following BLAST results are available for this feature:
BLAST of CsaV3_6G006410 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004145016.13.1e-58100.00PREDICTED: tubulin-folding cofactor A [Cucumis sativus] >XP_011656707.1 PREDICTE... [more]
KGN46266.13.1e-58100.00hypothetical protein Csa_6G078610 [Cucumis sativus][more]
XP_008460084.11.8e-5093.81PREDICTED: tubulin-folding cofactor A [Cucumis melo] >XP_008460085.1 PREDICTED: ... [more]
XP_022155762.16.1e-4687.61tubulin-folding cofactor A [Momordica charantia][more]
XP_023006149.13.0e-4588.50tubulin-folding cofactor A [Cucurbita maxima] >XP_023006150.1 tubulin-folding co... [more]
BLAST of CsaV3_6G006410 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G30410.11.1e-4178.10tubulin folding cofactor A (KIESEL)[more]
BLAST of CsaV3_6G006410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O04350|TBCA_ARATH2.0e-4078.10Tubulin-folding cofactor A OS=Arabidopsis thaliana OX=3702 GN=TFCA PE=1 SV=2[more]
sp|P80585|TBCA_CHICK5.5e-1444.12Tubulin-specific chaperone A OS=Gallus gallus OX=9031 GN=TBCA PE=1 SV=2[more]
sp|O75347|TBCA_HUMAN2.7e-1342.16Tubulin-specific chaperone A OS=Homo sapiens OX=9606 GN=TBCA PE=1 SV=3[more]
sp|Q6PEC1|TBCA_RAT2.7e-1342.16Tubulin-specific chaperone A OS=Rattus norvegicus OX=10116 GN=Tbca PE=1 SV=1[more]
sp|P48428|TBCA_MOUSE7.9e-1341.18Tubulin-specific chaperone A OS=Mus musculus OX=10090 GN=Tbca PE=1 SV=3[more]
BLAST of CsaV3_6G006410 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KER0|A0A0A0KER0_CUCSA2.1e-58100.00Tubulin-specific chaperone A OS=Cucumis sativus OX=3659 GN=Csa_6G078610 PE=3 SV=... [more]
tr|A0A1S3CBQ5|A0A1S3CBQ5_CUCME1.2e-5093.81Tubulin-specific chaperone A OS=Cucumis melo OX=3656 GN=LOC103499001 PE=3 SV=1[more]
tr|A0A0B0MLK3|A0A0B0MLK3_GOSAR5.1e-4180.36Tubulin-specific chaperone A OS=Gossypium arboreum OX=29729 GN=F383_26345 PE=3 S... [more]
tr|A0A2P5YEY3|A0A2P5YEY3_GOSBA5.1e-4180.36Tubulin-specific chaperone A OS=Gossypium barbadense OX=3634 GN=GOBAR_AA06454 PE... [more]
tr|A0A1U8PW82|A0A1U8PW82_GOSHI1.1e-4079.46Tubulin-specific chaperone A OS=Gossypium hirsutum OX=3635 GN=LOC107963369 PE=3 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007021tubulin complex assembly
GO:0007023post-chaperonin tubulin folding pathway
Vocabulary: Molecular Function
TermDefinition
GO:0048487beta-tubulin binding
Vocabulary: INTERPRO
TermDefinition
IPR036126TBCA_sf
IPR004226TBCA
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007023 post-chaperonin tubulin folding pathway
biological_process GO:0007021 tubulin complex assembly
cellular_component GO:0045298 tubulin complex
cellular_component GO:0005829 cytosol
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005874 microtubule
molecular_function GO:0048487 beta-tubulin binding
molecular_function GO:0051082 unfolded protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G006410.1CsaV3_6G006410.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 66..89
NoneNo IPR availableGENE3DG3DSA:1.20.58.90coord: 1..113
e-value: 5.1E-42
score: 144.5
IPR004226Tubulin binding cofactor APFAMPF02970TBCAcoord: 7..87
e-value: 5.1E-27
score: 93.9
IPR004226Tubulin binding cofactor APANTHERPTHR21500TUBULIN-SPECIFIC CHAPERONE Acoord: 2..109
IPR004226Tubulin binding cofactor APRODOMPD010430coord: 10..102
e-value: 2.0E-29
score: 315.0
IPR036126Tubulin binding cofactor A superfamilySUPERFAMILYSSF46988Tubulin chaperone cofactor Acoord: 3..104

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G006410CSPI06G06100Wild cucumber (PI 183967)cpicucB364
CsaV3_6G006410Cucsa.362540Cucumber (Gy14) v1cgycucB556
CsaV3_6G006410CmaCh17G000510Cucurbita maxima (Rimu)cmacucB0441
CsaV3_6G006410CmoCh17G000500Cucurbita moschata (Rifu)cmocucB0434
CsaV3_6G006410Cp4.1LG12g00440Cucurbita pepo (Zucchini)cpecucB0167
CsaV3_6G006410CsGy6G006080Cucumber (Gy14) v2cgybcucB298
CsaV3_6G006410Carg10183Silver-seed gourdcarcucB0263
CsaV3_6G006410Cla006982Watermelon (97103) v1cucwmB562
CsaV3_6G006410MELO3C022478Melon (DHL92) v3.5.1cucmeB444
CsaV3_6G006410ClCG06G000640Watermelon (Charleston Gray)cucwcgB497
CsaV3_6G006410Lsi09G018810Bottle gourd (USVL1VR-Ls)cuclsiB424
CsaV3_6G006410MELO3C022478.2Melon (DHL92) v3.6.1cucmedB435
CsaV3_6G006410Cla97C06G109870Watermelon (97103) v2cucwmbB487
CsaV3_6G006410Bhi12G002259Wax gourdcucwgoB561
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G006410Cucumber (Chinese Long) v3cuccucB137
CsaV3_6G006410Silver-seed gourdcarcucB0654
CsaV3_6G006410Silver-seed gourdcarcucB1129
CsaV3_6G006410Silver-seed gourdcarcucB1004
CsaV3_6G006410Silver-seed gourdcarcucB1128
CsaV3_6G006410Cucumber (Gy14) v2cgybcucB142
CsaV3_6G006410Cucumber (Gy14) v1cgycucB398
CsaV3_6G006410Cucurbita maxima (Rimu)cmacucB0313
CsaV3_6G006410Cucurbita maxima (Rimu)cmacucB0996
CsaV3_6G006410Cucurbita maxima (Rimu)cmacucB1065
CsaV3_6G006410Cucurbita maxima (Rimu)cmacucB1075
CsaV3_6G006410Cucurbita moschata (Rifu)cmocucB0308
CsaV3_6G006410Cucurbita moschata (Rifu)cmocucB0980
CsaV3_6G006410Cucurbita moschata (Rifu)cmocucB1047
CsaV3_6G006410Cucurbita moschata (Rifu)cmocucB1057
CsaV3_6G006410Cucurbita pepo (Zucchini)cpecucB0396
CsaV3_6G006410Cucurbita pepo (Zucchini)cpecucB0785
CsaV3_6G006410Cucurbita pepo (Zucchini)cpecucB1077
CsaV3_6G006410Wild cucumber (PI 183967)cpicucB178
CsaV3_6G006410Bottle gourd (USVL1VR-Ls)cuclsiB491
CsaV3_6G006410Melon (DHL92) v3.5.1cucmeB506
CsaV3_6G006410Melon (DHL92) v3.6.1cucmedB493
CsaV3_6G006410Watermelon (Charleston Gray)cucwcgB490
CsaV3_6G006410Watermelon (97103) v1cucwmB517
CsaV3_6G006410Watermelon (97103) v2cucwmbB478
CsaV3_6G006410Wax gourdcucwgoB572