Cucsa.362540 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.362540
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionTubulin-specific chaperone A
Locationscaffold03611 : 379355 .. 380825 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GACCAAAGAGACATTTTCAAATCTGAAAGTACCAAAGAATCTACCAATTATTGTGGCAGCTCTGCGGTTGGCTCAAGTATTCTCACTTTAAAGTTCTTCTTCTTCACGGGAAAAAaCACCTCCCACGCTCTCTCTCTGCGCGCCGCTCAACTTGCCGGATCTCCCTCTCACTCTAGCGATTATCTCTCTCGCCGGACGTCGACTCCCAGCTGTGCACGTACGAACTCCCTCCCGGCCGCGTTTCTTCCGTCTATACCGCCAAACCCGAGCACTGGTTTTTCTGGCTCGCCCCCTGCTATTCTTTGCGCCGCTGGGTCTTATCGTCGCTATTCTCACCGGATCTTGGCTTTGGGGTAAGATTTATTTGATGTGGTTGGGTTTTGTGGAAGATTTTTGAACACCCATTGAACGTTGGCTTCTTCAAATTAGTGATACCCTTAGATGTTCGGTTTGATGCTAAATTTACTCATGATTTTGAAATGCTAGAATTCGAATTAGAAGAATGTTAGTGGGCTGCTCACGAAGTTAAGACGAACTTTTGCAGTGTTGGGTAATTTTAGTGAGTTTTCATAGAGTGTTATTGAATACCCATAATTTTTTTTTtACCCAAATTGATTGACGTTCTTCGTGTTTCGGCTTTAGATTCAAAATTTGGAGAACATTAATGTACTATCCAGCGGGTTACGATTAATGTTGGGAAGATTTTGGTTAAAACGAAGTGGGTAGAGCTTATAATCCCATAAGATCAAGCCATTGACAGTGGGTGGTTTATTTGTAAGTTGTTTGGGATCGGGATGATACTTGAGGGTGTCTGTACACTCTGTAGTTTGGATATCGTAAGTCCTAGAAATGAAAACTTCACCTCTTTTTCAGGAGTGGTTAATCAATTATTTAACAGCCCCTACTCCCTTGTTTTAGAAAAGTGTTTTTAGATAGTGTCTTGTCATAGATCCAGGTTAGAAAGATAATCTGAAATGGCTTATGACAACTTACCTCCATGATACAAGAAATTTCGTGGAAAAGCTGACGTTGAGAACATGCTCCCAGTCTGAATTTTCAATAGCATCCAGGGGTTTAAGATAGAATGTGTACTAATTAATTACCATGAATTCCCACGACCCTTAACAAACTTTAAGAATATGATAACATTGTTTCATAATGGAGCCCCAATTTTCATGCTTTTATGGGAACTGAGAAGCAAAATATTGTCTCTCTTAGAAGCTTCAATTCGGTGAATTAGGTTTATCCTAACTGGGAGACTTGTGGATTCCAAATCCATGATAAATGCTTTTGGTGATAGGTCAGTATGGCTACTGTAAAGAACCTTAAAATTAAGACAGCTACCTGCAAACGCATTCTCAAGGAGTTGTTTTCTTATGAGAAGGAGGTTGAGAGAGAAGCTGCCAAAACTGCTGACATGAAAGAAAAAGGTGCTGACCCTTATGACCTTAAACAACAGGTATGTAAGTAG

mRNA sequence

GACCAAAGAGACATTTTCAAATCTGAAAGTACCAAAGAATCTACCAATTATTGTGGCAGCTCTGCGGTTGGCTCAAGTATTCTCACTTTAAAGTTCTTCTTCTTCACGGGAAAAAACACCTCCCACGCTCTCTCTCTGCGCGCCGCTCAACTTGCCGGATCTCCCTCTCACTCTAGCGATTATCTCTCTCGCCGGACGTCGACTCCCAGCTGTGCACGTACGAACTCCCTCCCGGCCGCGTTTCTTCCGTCTATACCGCCAAACCCGAGCACTGGTTTTTCTGGCTCGCCCCCTGCTATTCTTTGCGCCGCTGGGTCTTATCGTCGCTATTCTCACCGGATCTTGGCTTTGGGTATGGCTACTGTAAAGAACCTTAAAATTAAGACAGCTACCTGCAAACGCATTCTCAAGGAGTTGTTTTCTTATGAGAAGGAGGTTGAGAGAGAAGCTGCCAAAACTGCTGACATGAAAGAAAAAGGTGCTGACCCTTATGACCTTAAACAACAGGTATGTAAGTAG

Coding sequence (CDS)

GACCAAAGAGACATTTTCAAATCTGAAAGTACCAAAGAATCTACCAATTATTGTGGCAGCTCTGCGGTTGGCTCAAGTATTCTCACTTTAAAGTTCTTCTTCTTCACGGGAAAAAaCACCTCCCACGCTCTCTCTCTGCGCGCCGCTCAACTTGCCGGATCTCCCTCTCACTCTAGCGATTATCTCTCTCGCCGGACGTCGACTCCCAGCTGTGCACGTACGAACTCCCTCCCGGCCGCGTTTCTTCCGTCTATACCGCCAAACCCGAGCACTGGTTTTTCTGGCTCGCCCCCTGCTATTCTTTGCGCCGCTGGGTCTTATCGTCGCTATTCTCACCGGATCTTGGCTTTGGGTATGGCTACTGTAAAGAACCTTAAAATTAAGACAGCTACCTGCAAACGCATTCTCAAGGAGTTGTTTTCTTATGAGAAGGAGGTTGAGAGAGAAGCTGCCAAAACTGCTGACATGAAAGAAAAAGGTGCTGACCCTTATGACCTTAAACAACAGGTATGTAAGTAG

Protein sequence

DQRDIFKSESTKESTNYCGSSAVGSSILTLKFFFFTGKNTSHALSLRAAQLAGSPSHSSDYLSRRTSTPSCARTNSLPAAFLPSIPPNPSTGFSGSPPAILCAAGSYRRYSHRILALGMATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQVCK*
Homology
[Close]
BLAST of Cucsa.362540 vs. Swiss-Prot
Match: TBCA_ARATH (Tubulin-folding cofactor A OS=Arabidopsis thaliana GN=TFCA PE=1 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 6.0e-19
Identity = 45/51 (88.24%), Postives = 50/51 (98.04%), Query Frame = 1 

Query: 119 MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQ 170
           MAT++NLKIKT+TCKRI+KEL SYEKEVEREAAKTADMK+KGADPYDLKQQ
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQ 51

[Close]
BLAST of Cucsa.362540 vs. TrEMBL
Match: A0A0A0KER0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078610 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.3e-89
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1 

Query: 1   DQRDIFKSESTKESTNYCGSSAVGSSILTLKFFFFTGKNTSHALSLRAAQLAGSPSHSSD 60
           DQRDIFKSESTKESTNYCGSSAVGSSILTLKFFFFTGKNTSHALSLRAAQLAGSPSHSSD
Sbjct: 11  DQRDIFKSESTKESTNYCGSSAVGSSILTLKFFFFTGKNTSHALSLRAAQLAGSPSHSSD 70

Query: 61  YLSRRTSTPSCARTNSLPAAFLPSIPPNPSTGFSGSPPAILCAAGSYRRYSHRILALGMA 120
           YLSRRTSTPSCARTNSLPAAFLPSIPPNPSTGFSGSPPAILCAAGSYRRYSHRILALGMA
Sbjct: 71  YLSRRTSTPSCARTNSLPAAFLPSIPPNPSTGFSGSPPAILCAAGSYRRYSHRILALGMA 130

Query: 121 TVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQ 170
           TVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQ
Sbjct: 131 TVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQ 179

[Close]
BLAST of Cucsa.362540 vs. TrEMBL
Match: A0A0B0MLK3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_26345 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-17
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1 

Query: 119 MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQ 170
           MATV+NLKIKT+TCKRILKEL SYEKEVEREAAKTADMKEKGADPYDLKQQ
Sbjct: 1   MATVRNLKIKTSTCKRILKELHSYEKEVEREAAKTADMKEKGADPYDLKQQ 51

[Close]
BLAST of Cucsa.362540 vs. TrEMBL
Match: A0A0D2TRL2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G347600 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-17
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 1 

Query: 119 MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQ 170
           MATV+NLKIKT+TCKRI+KEL SYEKEVEREAAKTADMKEKGADPYDLKQQ
Sbjct: 1   MATVRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQ 51

[Close]
BLAST of Cucsa.362540 vs. TrEMBL
Match: M4M6P8_GOSAR (Tubulin-specific chaperone A OS=Gossypium arboreum PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-17
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 1 

Query: 119 MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQ 170
           MATV+NLKIKT+TCKRI+KEL SYEKEVEREAAKTADMKEKGADPYDLKQQ
Sbjct: 1   MATVRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQ 51

[Close]
BLAST of Cucsa.362540 vs. TrEMBL
Match: A0A067E691_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g038806mg PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.0e-17
Identity = 46/51 (90.20%), Postives = 50/51 (98.04%), Query Frame = 1 

Query: 119 MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQ 170
           MATV+NLKIKT+TCKR++KEL SYEKEVEREAAKTADMKEKGADPYDLKQQ
Sbjct: 51  MATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQ 101

[Close]
BLAST of Cucsa.362540 vs. TAIR10
Match: AT2G30410.1 (AT2G30410.1 tubulin folding cofactor A (KIESEL))

HSP 1 Score: 95.5 bits (236), Expect = 3.4e-20
Identity = 45/51 (88.24%), Postives = 50/51 (98.04%), Query Frame = 1 

Query: 119 MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQ 170
           MAT++NLKIKT+TCKRI+KEL SYEKEVEREAAKTADMK+KGADPYDLKQQ
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQ 51

[Close]
BLAST of Cucsa.362540 vs. NCBI nr
Match: gi|700191062|gb|KGN46266.1| (hypothetical protein Csa_6G078610 [Cucumis sativus])

HSP 1 Score: 337.0 bits (863), Expect = 1.9e-89
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1 

Query: 1   DQRDIFKSESTKESTNYCGSSAVGSSILTLKFFFFTGKNTSHALSLRAAQLAGSPSHSSD 60
           DQRDIFKSESTKESTNYCGSSAVGSSILTLKFFFFTGKNTSHALSLRAAQLAGSPSHSSD
Sbjct: 11  DQRDIFKSESTKESTNYCGSSAVGSSILTLKFFFFTGKNTSHALSLRAAQLAGSPSHSSD 70

Query: 61  YLSRRTSTPSCARTNSLPAAFLPSIPPNPSTGFSGSPPAILCAAGSYRRYSHRILALGMA 120
           YLSRRTSTPSCARTNSLPAAFLPSIPPNPSTGFSGSPPAILCAAGSYRRYSHRILALGMA
Sbjct: 71  YLSRRTSTPSCARTNSLPAAFLPSIPPNPSTGFSGSPPAILCAAGSYRRYSHRILALGMA 130

Query: 121 TVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQ 170
           TVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQ
Sbjct: 131 TVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQ 179

[Close]
BLAST of Cucsa.362540 vs. NCBI nr
Match: gi|449454548|ref|XP_004145016.1| (PREDICTED: tubulin-folding cofactor A [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 4.6e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 

Query: 119 MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQ 170
           MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQ
Sbjct: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQ 51

[Close]
BLAST of Cucsa.362540 vs. NCBI nr
Match: gi|659120230|ref|XP_008460084.1| (PREDICTED: tubulin-folding cofactor A [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 1.0e-18
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 

Query: 119 MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQ 170
           MATVKNLKIKTATCKRILKELFSYEKEVEREA+KTADMKEKGADPYDLKQQ
Sbjct: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREASKTADMKEKGADPYDLKQQ 51

[Close]
BLAST of Cucsa.362540 vs. NCBI nr
Match: gi|969996509|ref|XP_015063482.1| (PREDICTED: tubulin-folding cofactor A [Solanum pennellii])

HSP 1 Score: 98.2 bits (243), Expect = 1.5e-17
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1 

Query: 119 MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQ 170
           MATV+NLKIKT+TCKRILKEL SYEKEVEREAAKTADMKEKGADPYDLKQQ
Sbjct: 1   MATVRNLKIKTSTCKRILKELHSYEKEVEREAAKTADMKEKGADPYDLKQQ 51

[Close]
BLAST of Cucsa.362540 vs. NCBI nr
Match: gi|729306821|ref|XP_010528691.1| (PREDICTED: tubulin-folding cofactor A isoform X1 [Tarenaya hassleriana])

HSP 1 Score: 98.2 bits (243), Expect = 1.5e-17
Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 111 SHRILALGMATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQ 170
           S  I+++ MAT++NLKIKT+TCKRI+KEL SYEKEVEREAAKTADMKEKGADPYDLKQQ
Sbjct: 27  SVEIVSVIMATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQ 85

The following BLAST results are available for this feature:
BLAST of Cucsa.362540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TBCA_ARATH6.0e-1988.24Tubulin-folding cofactor A OS=Arabidopsis thaliana GN=TFCA PE=1 SV=2[more]
BLAST of Cucsa.362540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KER0_CUCSA1.3e-89100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078610 PE=4 SV=1[more]
A0A0B0MLK3_GOSAR1.0e-1794.12Uncharacterized protein OS=Gossypium arboreum GN=F383_26345 PE=4 SV=1[more]
A0A0D2TRL2_GOSRA2.3e-1792.16Uncharacterized protein OS=Gossypium raimondii GN=B456_007G347600 PE=4 SV=1[more]
M4M6P8_GOSAR2.3e-1792.16Tubulin-specific chaperone A OS=Gossypium arboreum PE=2 SV=1[more]
A0A067E691_CITSI3.0e-1790.20Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g038806mg PE=4 S... [more]
BLAST of Cucsa.362540 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G30410.13.4e-2088.24 tubulin folding cofactor A (KIESEL)[more]
BLAST of Cucsa.362540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191062|gb|KGN46266.1|1.9e-89100.00hypothetical protein Csa_6G078610 [Cucumis sativus][more]
gi|449454548|ref|XP_004145016.1|4.6e-19100.00PREDICTED: tubulin-folding cofactor A [Cucumis sativus][more]
gi|659120230|ref|XP_008460084.1|1.0e-1898.04PREDICTED: tubulin-folding cofactor A [Cucumis melo][more]
gi|969996509|ref|XP_015063482.1|1.5e-1794.12PREDICTED: tubulin-folding cofactor A [Solanum pennellii][more]
gi|729306821|ref|XP_010528691.1|1.5e-1781.36PREDICTED: tubulin-folding cofactor A isoform X1 [Tarenaya hassleriana][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004226TBCA
Vocabulary: Biological Process
TermDefinition
GO:0007021tubulin complex assembly
GO:0007023post-chaperonin tubulin folding pathway
Vocabulary: Molecular Function
TermDefinition
GO:0048487beta-tubulin binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007023 post-chaperonin tubulin folding pathway
biological_process GO:0007021 tubulin complex assembly
cellular_component GO:0005829 cytosol
cellular_component GO:0045298 tubulin complex
molecular_function GO:0048487 beta-tubulin binding
molecular_function GO:0051082 unfolded protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.362540.1Cucsa.362540.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004226Tubulin binding cofactor APRODOMPD010430coord: 128..169
score: 1.0
IPR004226Tubulin binding cofactor APFAMPF02970TBCAcoord: 125..169
score: 1.8
IPR004226Tubulin binding cofactor AunknownSSF46988Tubulin chaperone cofactor Acoord: 121..169
score: 6.67
NoneNo IPR availableGENE3DG3DSA:1.20.58.90coord: 119..169
score: 7.9
NoneNo IPR availablePANTHERPTHR21500TUBULIN-SPECIFIC CHAPERONE Acoord: 119..169
score: 5.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.362540Cla006982Watermelon (97103) v1cgywmB666
Cucsa.362540Csa6G078610Cucumber (Chinese Long) v2cgycuB511
Cucsa.362540MELO3C022478Melon (DHL92) v3.5.1cgymeB586
Cucsa.362540ClCG06G000640Watermelon (Charleston Gray)cgywcgB620
Cucsa.362540CSPI06G06100Wild cucumber (PI 183967)cgycpiB540
Cucsa.362540CmaCh17G000510Cucurbita maxima (Rimu)cgycmaB0998
Cucsa.362540CmoCh17G000500Cucurbita moschata (Rifu)cgycmoB0999
Cucsa.362540Lsi09G018810Bottle gourd (USVL1VR-Ls)cgylsiB583
Cucsa.362540Cp4.1LG12g00440Cucurbita pepo (Zucchini)cgycpeB0947
Cucsa.362540MELO3C022478.2Melon (DHL92) v3.6.1cgymedB586
Cucsa.362540CsaV3_6G006410Cucumber (Chinese Long) v3cgycucB556
Cucsa.362540Cla97C06G109870Watermelon (97103) v2cgywmbB625
Cucsa.362540Bhi12G002259Wax gourdcgywgoB724
Cucsa.362540Carg10183Silver-seed gourdcarcgyB0271
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.362540Melon (DHL92) v3.6.1cgymedB592
Cucsa.362540Silver-seed gourdcarcgyB0695
Cucsa.362540Silver-seed gourdcarcgyB1079
Cucsa.362540Silver-seed gourdcarcgyB1193
Cucsa.362540Silver-seed gourdcarcgyB1194
Cucsa.362540Cucumber (Chinese Long) v3cgycucB553
Cucsa.362540Watermelon (97103) v2cgywmbB622
Cucsa.362540Wax gourdcgywgoB728
Cucsa.362540Cucumber (Gy14) v1cgycgyB130
Cucsa.362540Cucurbita maxima (Rimu)cgycmaB0990
Cucsa.362540Cucurbita maxima (Rimu)cgycmaB1007
Cucsa.362540Cucurbita maxima (Rimu)cgycmaB1008
Cucsa.362540Cucurbita moschata (Rifu)cgycmoB0992
Cucsa.362540Cucurbita moschata (Rifu)cgycmoB1007
Cucsa.362540Cucurbita moschata (Rifu)cgycmoB1008
Cucsa.362540Wild cucumber (PI 183967)cgycpiB537
Cucsa.362540Cucumber (Chinese Long) v2cgycuB509
Cucsa.362540Melon (DHL92) v3.5.1cgymeB594
Cucsa.362540Watermelon (Charleston Gray)cgywcgB617
Cucsa.362540Watermelon (97103) v1cgywmB663
Cucsa.362540Cucurbita pepo (Zucchini)cgycpeB0960
Cucsa.362540Cucurbita pepo (Zucchini)cgycpeB0965
Cucsa.362540Cucurbita pepo (Zucchini)cgycpeB0969
Cucsa.362540Bottle gourd (USVL1VR-Ls)cgylsiB585