Cla006982 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006982
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Tubulin-specific chaperone A (AHRD V1 ***- C3KIV8_ANOFI); contains Interpro domain(s) IPR004226 Tubulin binding cofactor A
Location	Chr6 : 559704 .. 561030 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTATAAAGAACCTGAAGATTAAGACAGCAACCTGCAAACGAATTATCAAGGAGTTGCATTCTTATGAGAAGGAGGTTGAGAGAGAAGCTGCTAAAACAGCTGACATGAAAGAAAAAGGGGCTGACCCTTATGACCTTAAACAACAGGTATGTAAAGGGGTTGCATTCTTAAAAATCAAAAGTCTGTATGATTATTGTCTGCTTGACTGCTTGTGGATTTGTTTGTGCCATCTGTGAATATCTTAAAAGAGGACTTCTTACACATTCAAAACCTTGTGATAGACAGAAATTTCCAACATCACACAATATGAACAATAGAATTTGTGAGCGTGAAGATAAGTGTTTTCACCTATAAAGAAGAATAATGGTCTCGAATTTGGAGCCTAGAGATGGTTTTCAGGGTAGGACTTTTGTAATTGTTTTTGGCCTCTTAACTTTCTCATTTTTTGATAAGAACGACAACTTTTATTGAGATAGAAATGAAAGAATACACGGGCATACTAAAAGGCCAACCCTCAAAAAAGGGACTCCAGCCATACAAAATAGAACCTACAAGATAATTACAAAAGGACTTCGAAATCGAAGCTTGGAGTAAGCATGAAATCTAACAAGGGACCAAGGAATAAACATCACTTGGATCCTTGTCCAACCCTCTAAACAAATGGTTTCTGCTCCTCCATAGATCTCACAAAATAGCACACACCCCAGCAAGTCAAAGAAACCAACCCTTCTTGCGAAAGGGCGGATGGAGAAGGAACTCCCCAATCACATCATAGATCTTCCTAGGCCACGCAAGCGAGAAACCAAATGGCCTTTTACTTTCTCATTGCTGTTAAACTTTATTTTCTTAAAGGTATAAAATCAAAAGGACCAACTAAAATGTTATTTCGGGTAATGGAGGTTGAATGTAATTGCCATCAGCATATGAATCTTCTTTTTCATTTGGTTTACGCAGTATATGATTTATAGTTTTAGCATTGTCATTGTAAGCAGGAAAATGTGCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTGGAGTCCGCATTAGCTGATCTGAAAGGAGCACTGGTATTAATGATCATTACCTTTGCTTTTCATCCTTCCCTTTCTTGCTCTTCTGAAGAGCTTGATTCTTGAAGGTTCTCTGCATGTGCCCGGTTTTTGTAAGTAAACTAAAACAAACCTTTTTCATCTTCTTCATCTCCAGGCTGAACTGGAAGAATCAACACAAGAGAAAGGCCAGGAGTTCGACGACGCTCGAAGTACAATCACCGAGATCGAAAGTTTCCTAAAGACAACAGAGGAATAG

mRNA sequence

ATGGCTACTATAAAGAACCTGAAGATTAAGACAGCAACCTGCAAACGAATTATCAAGGAGTTGCATTCTTATGAGAAGGAGGTTGAGAGAGAAGCTGCTAAAACAGCTGACATGAAAGAAAAAGGGGCTGACCCTTATGACCTTAAACAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTGGAGTCCGCATTAGCTGATCTGAAAGGAGCACTGGCTGAACTGGAAGAATCAACACAAGAGAAAGGCCAGGAGTTCGACGACGCTCGAAGTACAATCACCGAGATCGAAAGTTTCCTAAAGACAACAGAGGAATAG

Coding sequence (CDS)

ATGGCTACTATAAAGAACCTGAAGATTAAGACAGCAACCTGCAAACGAATTATCAAGGAGTTGCATTCTTATGAGAAGGAGGTTGAGAGAGAAGCTGCTAAAACAGCTGACATGAAAGAAAAAGGGGCTGACCCTTATGACCTTAAACAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTGGAGTCCGCATTAGCTGATCTGAAAGGAGCACTGGCTGAACTGGAAGAATCAACACAAGAGAAAGGCCAGGAGTTCGACGACGCTCGAAGTACAATCACCGAGATCGAAAGTTTCCTAAAGACAACAGAGGAATAG

Protein sequence

MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITEIESFLKTTEE

Homology

[Close]

BLAST of Cla006982 vs. Swiss-Prot
Match: TBCA_ARATH (Tubulin-folding cofactor A OS=Arabidopsis thaliana GN=TFCA PE=1 SV=2)

HSP 1 Score: 177.6 bits (449), Expect = 7.9e-44
Identity = 84/112 (75.00%), Postives = 97/112 (86.61%), Query Frame = 1


Query: 1   MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATI+NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 60

Query: 61  MVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITEIESFLKTTE 113
           M+PDCHKRLESALADLK  LAELEE+ +++G E +DA+ T+ ++E    T +
Sbjct: 61  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPTED 112

[Close]

BLAST of Cla006982 vs. Swiss-Prot
Match: TBCA_CHICK (Tubulin-specific chaperone A OS=Gallus gallus GN=TBCA PE=1 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-15
Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 1


Query: 4   IKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           ++ +KIKT   KR+ KE   YEKE +++  K   MK +  D Y +K+Q  +L ESRMM+P
Sbjct: 6   LRQIKIKTGVVKRLAKEKVMYEKEAKQQEEKIEKMKAEACDDYGIKKQAEILQESRMMIP 65

Query: 64  DCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITEIE 106
           DC +RLE A ADL   L    E   E+ +E+ +ARS +  ++
Sbjct: 66  DCQRRLEIAHADLTQLLE--NEKELEEAEEYKEARSILESVK 105

[Close]

BLAST of Cla006982 vs. Swiss-Prot
Match: TBCA_HUMAN (Tubulin-specific chaperone A OS=Homo sapiens GN=TBCA PE=1 SV=3)

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-15
Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 1


Query: 4   IKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           ++ +KIKT   KR++KE   YEKE +++  K   M+ +  + YD+K+Q  +L ESRMM+P
Sbjct: 6   VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIP 65

Query: 64  DCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITEIE 106
           DC +RLE+A  DL+  L    E   E+ +E+ +AR  +  ++
Sbjct: 66  DCQRRLEAAYLDLQRILE--NEKDLEEAEEYKEARLVLDSVK 105

[Close]

BLAST of Cla006982 vs. Swiss-Prot
Match: TBCA_RAT (Tubulin-specific chaperone A OS=Rattus norvegicus GN=Tbca PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.5e-15
Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 1


Query: 4   IKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           ++ +KIKT   KR++KE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMM+P
Sbjct: 6   VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65

Query: 64  DCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITEIE 106
           DC +RLE+A  DL+  L    E   E+ +E+ +AR  +  ++
Sbjct: 66  DCQRRLEAAYTDLRQILE--SEKDLEEAEEYKEARIVLDSVK 105

[Close]

BLAST of Cla006982 vs. Swiss-Prot
Match: TBCA_RABIT (Tubulin-specific chaperone A OS=Oryctolagus cuniculus GN=TBCA PE=1 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-14
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 1


Query: 4   IKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           ++ +KIKT   KR++KE   YEKE +++  K   M+ +  + Y +K+Q  +L ESRMM+P
Sbjct: 6   VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYAIKKQAEILQESRMMIP 65

Query: 64  DCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITEIE 106
           DC +RLE+A  DL+  L    E   E+ +E+ +AR  +  ++
Sbjct: 66  DCQRRLEAACTDLQQILE--SEKDLEEAEEYKEARLVLDSVK 105

[Close]

BLAST of Cla006982 vs. TrEMBL
Match: A0A0A0KER0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078610 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.3e-48
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 1


Query: 1   MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT+KNLKIKTATCKRI+KEL SYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 129 MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 188

Query: 61  MVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITEIESFLKTTEE 114
           MVPDCHKRLE ALADLK ALAELE+STQEKG EFDDARSTI ++ESFLK  EE
Sbjct: 189 MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEE 241

[Close]

BLAST of Cla006982 vs. TrEMBL
Match: A0A0D2TRL2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G347600 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.4e-46
Identity = 92/112 (82.14%), Postives = 105/112 (93.75%), Query Frame = 1


Query: 1   MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT++NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITEIESFLKTTE 113
           MVPDCHKRLE++LADLK  LAELEE+ +++G EF+DARSTITE+E   +TTE
Sbjct: 61  MVPDCHKRLEASLADLKATLAELEEANEKEGPEFEDARSTITEVEKLFQTTE 112

[Close]

BLAST of Cla006982 vs. TrEMBL
Match: A0A0B0MLK3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_26345 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 4.5e-46
Identity = 92/112 (82.14%), Postives = 105/112 (93.75%), Query Frame = 1


Query: 1   MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT++NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVRNLKIKTSTCKRILKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITEIESFLKTTE 113
           MVPDCHKRLE++LADLK  LAELEE+ +++G EF+DARSTITE+E   +TTE
Sbjct: 61  MVPDCHKRLEASLADLKATLAELEEANEKEGPEFEDARSTITEVEKLFQTTE 112

[Close]

BLAST of Cla006982 vs. TrEMBL
Match: A0A061F0Z2_THECC (Tubulin folding cofactor A (KIESEL) OS=Theobroma cacao GN=TCM_025729 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.3e-45
Identity = 91/112 (81.25%), Postives = 105/112 (93.75%), Query Frame = 1


Query: 1   MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATI+NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITEIESFLKTTE 113
           M+PDC KRLE++LADLKG LAEL+E+ +++G EF+DARSTITE+E   +TTE
Sbjct: 61  MIPDCRKRLEASLADLKGTLAELDETNEKEGPEFEDARSTITEVEKLFQTTE 112

[Close]

BLAST of Cla006982 vs. TrEMBL
Match: F6GVC5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0021g01180 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 6.5e-45
Identity = 91/112 (81.25%), Postives = 103/112 (91.96%), Query Frame = 1


Query: 1   MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATI+NLKIKT+TCKRIIKE HSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 5   MATIRNLKIKTSTCKRIIKEFHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 64

Query: 61  MVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITEIESFLKTTE 113
           M+PDC KRLE++LADLKG LAELEES Q++G E +DARST  E+++F +TTE
Sbjct: 65  MIPDCRKRLEASLADLKGTLAELEESNQKEGPEIEDARSTTAEVDNFFQTTE 116

[Close]

BLAST of Cla006982 vs. NCBI nr
Match: gi|449454548|ref|XP_004145016.1| (PREDICTED: tubulin-folding cofactor A [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 1.8e-48
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 1


Query: 1   MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT+KNLKIKTATCKRI+KEL SYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITEIESFLKTTEE 114
           MVPDCHKRLE ALADLK ALAELE+STQEKG EFDDARSTI ++ESFLK  EE
Sbjct: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEE 113

[Close]

BLAST of Cla006982 vs. NCBI nr
Match: gi|700191062|gb|KGN46266.1| (hypothetical protein Csa_6G078610 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 1.8e-48
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 1


Query: 1   MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT+KNLKIKTATCKRI+KEL SYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 129 MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 188

Query: 61  MVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITEIESFLKTTEE 114
           MVPDCHKRLE ALADLK ALAELE+STQEKG EFDDARSTI ++ESFLK  EE
Sbjct: 189 MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEE 241

[Close]

BLAST of Cla006982 vs. NCBI nr
Match: gi|659120230|ref|XP_008460084.1| (PREDICTED: tubulin-folding cofactor A [Cucumis melo])

HSP 1 Score: 199.1 bits (505), Expect = 4.0e-48
Identity = 100/113 (88.50%), Postives = 107/113 (94.69%), Query Frame = 1


Query: 1   MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT+KNLKIKTATCKRI+KEL SYEKEVEREA+KTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREASKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITEIESFLKTTEE 114
           MVPDCHKRLE ALADLK ALA+LE+ST+EKG EFDDARSTI +IESFLK TEE
Sbjct: 61  MVPDCHKRLEVALADLKEALADLEKSTEEKGPEFDDARSTINDIESFLKPTEE 113

[Close]

BLAST of Cla006982 vs. NCBI nr
Match: gi|823199138|ref|XP_012434815.1| (PREDICTED: tubulin-folding cofactor A [Gossypium raimondii])

HSP 1 Score: 192.2 bits (487), Expect = 4.9e-46
Identity = 92/112 (82.14%), Postives = 105/112 (93.75%), Query Frame = 1


Query: 1   MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT++NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITEIESFLKTTE 113
           MVPDCHKRLE++LADLK  LAELEE+ +++G EF+DARSTITE+E   +TTE
Sbjct: 61  MVPDCHKRLEASLADLKATLAELEEANEKEGPEFEDARSTITEVEKLFQTTE 112

[Close]

BLAST of Cla006982 vs. NCBI nr
Match: gi|728819044|gb|KHG03018.1| (hypothetical protein F383_26345 [Gossypium arboreum])

HSP 1 Score: 191.8 bits (486), Expect = 6.4e-46
Identity = 92/112 (82.14%), Postives = 105/112 (93.75%), Query Frame = 1


Query: 1   MATIKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT++NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVRNLKIKTSTCKRILKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGALAELEESTQEKGQEFDDARSTITEIESFLKTTE 113
           MVPDCHKRLE++LADLK  LAELEE+ +++G EF+DARSTITE+E   +TTE
Sbjct: 61  MVPDCHKRLEASLADLKATLAELEEANEKEGPEFEDARSTITEVEKLFQTTE 112

The following BLAST results are available for this feature:

BLAST of Cla006982 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TBCA_ARATH	7.9e-44	75.00	Tubulin-folding cofactor A OS=Arabidopsis thaliana GN=TFCA PE=1 SV=2	[more]
TBCA_CHICK	2.0e-15	41.18	Tubulin-specific chaperone A OS=Gallus gallus GN=TBCA PE=1 SV=2	[more]
TBCA_HUMAN	2.0e-15	38.24	Tubulin-specific chaperone A OS=Homo sapiens GN=TBCA PE=1 SV=3	[more]
TBCA_RAT	4.5e-15	38.24	Tubulin-specific chaperone A OS=Rattus norvegicus GN=Tbca PE=1 SV=1	[more]
TBCA_RABIT	1.3e-14	37.25	Tubulin-specific chaperone A OS=Oryctolagus cuniculus GN=TBCA PE=1 SV=2	[more]

BLAST of Cla006982 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KER0_CUCSA	1.3e-48	89.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078610 PE=4 SV=1	[more]
A0A0D2TRL2_GOSRA	3.4e-46	82.14	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G347600 PE=4 SV=1	[more]
A0A0B0MLK3_GOSAR	4.5e-46	82.14	Uncharacterized protein OS=Gossypium arboreum GN=F383_26345 PE=4 SV=1	[more]
A0A061F0Z2_THECC	1.3e-45	81.25	Tubulin folding cofactor A (KIESEL) OS=Theobroma cacao GN=TCM_025729 PE=4 SV=1	[more]
F6GVC5_VITVI	6.5e-45	81.25	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0021g01180 PE=4 SV=...	[more]

BLAST of Cla006982 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454548\|ref\|XP_004145016.1\|	1.8e-48	89.38	PREDICTED: tubulin-folding cofactor A [Cucumis sativus]	[more]
gi\|700191062\|gb\|KGN46266.1\|	1.8e-48	89.38	hypothetical protein Csa_6G078610 [Cucumis sativus]	[more]
gi\|659120230\|ref\|XP_008460084.1\|	4.0e-48	88.50	PREDICTED: tubulin-folding cofactor A [Cucumis melo]	[more]
gi\|823199138\|ref\|XP_012434815.1\|	4.9e-46	82.14	PREDICTED: tubulin-folding cofactor A [Gossypium raimondii]	[more]
gi\|728819044\|gb\|KHG03018.1\|	6.4e-46	82.14	hypothetical protein F383_26345 [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004226	TBCA

Vocabulary: **Biological Process**
Term	Definition
GO:0007021	tubulin complex assembly
GO:0007023	post-chaperonin tubulin folding pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0048487	beta-tubulin binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007023	post-chaperonin tubulin folding pathway
biological_process	GO:0007021	tubulin complex assembly
cellular_component	GO:0005829	cytosol
cellular_component	GO:0045298	tubulin complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005874	microtubule
cellular_component	GO:0005856	cytoskeleton
molecular_function	GO:0048487	beta-tubulin binding
molecular_function	GO:0051082	unfolded protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU11679	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU29942	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU56580	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006982	Cla006982.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU29942	WMU29942	transcribed_cluster
WMU11679	WMU11679	transcribed_cluster
WMU56580	WMU56580	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004226	Tubulin binding cofactor A	PRODOM	PD010430		coord: 10..102 score: 7.0
IPR004226	Tubulin binding cofactor A	PFAM	PF02970	TBCA	coord: 7..88 score: 1.0
IPR004226	Tubulin binding cofactor A	unknown	SSF46988	Tubulin chaperone cofactor A	coord: 3..104 score: 8.11
None	No IPR available	unknown	Coil	Coil	coord: 66..93 score: -coord: 14..41 scor
None	No IPR available	GENE3D	G3DSA:1.20.58.90		coord: 2..106 score: 2.0
None	No IPR available	PANTHER	PTHR21500	TUBULIN-SPECIFIC CHAPERONE A	coord: 1..113 score: 6.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla006982	Cla97C06G109870	Watermelon (97103) v2	wmwmbB407
Cla006982	Csa6G078610	Cucumber (Chinese Long) v2	cuwmB537
Cla006982	MELO3C022478	Melon (DHL92) v3.5.1	mewmB140
Cla006982	ClCG06G000640	Watermelon (Charleston Gray)	wcgwmB345
Cla006982	CSPI06G06100	Wild cucumber (PI 183967)	cpiwmB556
Cla006982	Cucsa.362540	Cucumber (Gy14) v1	cgywmB666
Cla006982	CmaCh17G000510	Cucurbita maxima (Rimu)	cmawmB353
Cla006982	CmoCh17G000500	Cucurbita moschata (Rifu)	cmowmB348
Cla006982	Lsi09G018810	Bottle gourd (USVL1VR-Ls)	lsiwmB041
Cla006982	Cp4.1LG12g00440	Cucurbita pepo (Zucchini)	cpewmB157
Cla006982	CsGy6G006080	Cucumber (Gy14) v2	cgybwmB501
Cla006982	MELO3C022478.2	Melon (DHL92) v3.6.1	medwmB138
Cla006982	Carg10183	Silver-seed gourd	carwmB0221
Cla006982	CsaV3_6G006410	Cucumber (Chinese Long) v3	cucwmB562
Cla006982	Bhi12G002259	Wax gourd	wgowmB107

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006982	Cucumber (Gy14) v1	cgywmB484
Cla006982	Cucurbita maxima (Rimu)	cmawmB251
Cla006982	Cucurbita maxima (Rimu)	cmawmB810
Cla006982	Cucurbita maxima (Rimu)	cmawmB874
Cla006982	Cucurbita maxima (Rimu)	cmawmB881
Cla006982	Cucurbita moschata (Rifu)	cmowmB241
Cla006982	Cucurbita moschata (Rifu)	cmowmB801
Cla006982	Cucurbita moschata (Rifu)	cmowmB862
Cla006982	Cucurbita moschata (Rifu)	cmowmB870
Cla006982	Melon (DHL92) v3.5.1	mewmB484
Cla006982	Watermelon (Charleston Gray)	wcgwmB309
Cla006982	Cucumber (Chinese Long) v2	cuwmB276
Cla006982	Cucurbita pepo (Zucchini)	cpewmB336
Cla006982	Cucurbita pepo (Zucchini)	cpewmB625
Cla006982	Cucurbita pepo (Zucchini)	cpewmB854
Cla006982	Bottle gourd (USVL1VR-Ls)	lsiwmB385
Cla006982	Cucumber (Gy14) v2	cgybwmB259
Cla006982	Melon (DHL92) v3.6.1	medwmB473
Cla006982	Silver-seed gourd	carwmB0619
Cla006982	Silver-seed gourd	carwmB0963
Cla006982	Silver-seed gourd	carwmB1078
Cla006982	Silver-seed gourd	carwmB1079
Cla006982	Cucumber (Chinese Long) v3	cucwmB285
Cla006982	Watermelon (97103) v2	wmwmbB398
Cla006982	Wax gourd	wgowmB236
Cla006982	Watermelon (97103) v1	wmwmB137