CmaCh17G000510 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G000510
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Tubulin-specific chaperone A
Location	Cma_Chr17 : 221809 .. 223995 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCGGGGTCGTGTGGCTTGTTTTGTACTGCGCATTATTTGGGTGGAAAACTCCATTGATGTGCTAATAGAAAAGGAAGCAACTCCCAAAGAAGAGATCAGGGTTTCTTCTCCACCAACTCCGTAGAATTTTGGATCAAGATTTCGTCGACGATCAAGTTCTTCCGGCGCAGGTCGGTTTTTTCTTCGCTTTTTTCTAGCTTTTGCGCTTCTTCAATCTTCTCCAATGATTTCCAATCGAAACAATCTATTGAATCTCGACATGCATTGATCCTTCGATTCAGTTTCCCCTTTGTTAGCCATTTCTGCCTTTCTTCTATATCTTTTAGTTTCGCCGTGTCTAGATCTTGGGCGGCGTATCGTCTATGATTTCACATGCGTTTCTGCTTCTCCTTTTTCTTTTATAGATTTGCTTAGATTTGAGATAGATTACGTCTTTTTGTGGTTACGCTTATGTTAGGGCTTAATCGTCTCTTCAAATGAAATGAGCAATCGAAGTCTTGATATTTATTGAAATTCGTAGTGTAGGTTGAATATATGAGTTTTTGTCGCCACTCCGAGTGCTAGTGCGGCTAGAAAACTCTGGTTGGGAGTTCTTCTAAGACCGTGAACTTGTGTGTGTAGCAACATTGATGTTATCAATATGTTATGTGATTCTGAGCTACAACAATGCTTCTGTTTCTTCAGAATAACTGGTCTTGTGTAATGTTACCCCCCAGGCTAGTTGTATATTTTGATAAGACGCTCATTGATCAAGTGCATATCTCTCTTTGAACAAGAATCGTGTCCGGAGAAACCTTGACTTGGTTGAAATTGTTCCTTGGAACATCTACACGTATTAAGAATGTGGGCGACACTTTATCATAGACATTGAAGTTAACGATCTTCACTGTTAAAGAAATTTGGTATCCGCGAGCTTCATCATGATTTTTTGTTTAGAGGTGTGGTGGGAATGAACATTATTACCCCTGAGAAATTTGAAGAAGAGCTTACCTCCATGATACAGGAAACTTTGAAAAACCATGTCCTGAGTCTAAAGTTCTGATAGCATCTTAGGGTTTAAGAAGAGGAAAGAATGTATTACTGATTAATTACCATGAATTCACACGACCCCTGACGAACTTTAACAACTTAACTTCAAGAAATTGATAACATTAATTTGCAATGAACTTTGTTTAACCGTGTAAATCAAAGTTGTGCCATTATGCTTTTTGGAGTTCCAATTTTCATGCTTTTGTGAGAAGCAAAGTCTTCTCTGTTTAACCATTTCGAGTTTTGACCCCCCTATAAGAGGTTTGTGGATCACAAATCCACGATAAATTCTTCTGATGATAGGACAGTATGGCTACAGTAAAGAACCTGAAGATTAAGACAGCAACCTGCAAACGCATTATCAAGGAGTTGCATTCTTACGAGAAGGAGGTCGAGAGAGAAGCTGCCAAAACCGCTGACATGAAAGAAAAAGGGGCTGACCCTTATGACCTTAAGCAACAGGTACGTAAATGGCTTGCATTCTTAATAATCAAAAGTTTATACGATTATTGTTGGCTTGATTGCTTGTGGTTTTATTTGTGCCATCCGTGAATATCTTAAAGAAGACTTTTTAGACTGACTTGTTCAACATTACTCAATATGAACAATAGAATTTGTGAGCGTGTAGATTATGTGATTTGAACTATGGAGAAGAATAATGGTCCCAAATTTGGAACATAATTTCTGTTCAACTTTATGTTTTGAAAGCTATAAAATCAAAACGACCAACTAAAATATTATTTCGGTAATGGAGATTGAATGAAATGTTATCATCATATGAATCATCTTCTTCAATTGGTCTATATATTATTATGATTTTACAGTTAGCATTCTCACTGTAAGCAGGAAAACGTTCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTGGAGTCCGCCTTAGCTGATCTGAAAGGAACACTGGTATTGGCTTTTCATTCCCTTTTTTGCTCTTATGAGGAGCTTGATTCTAGAAGGTTATCTGCACGTGCCCAATTTTTGTTAGTTTACTAAAACAAATCCTTATCGACTTCTTCATGTCCAGGATGAACTGGAAAAATCAACACAAGTGAAAGGCCCTGAGTTTGACGATGCTCGGAGCATAATCACTGAGATCGAAAGTTTCCTTAAGACAACAGAGGAATAG

mRNA sequence

AAGCGGGGTCGTGTGGCTTGTTTTGTACTGCGCATTATTTGGGTGGAAAACTCCATTGATGTGCTAATAGAAAAGGAAGCAACTCCCAAAGAAGAGATCAGGGTTTCTTCTCCACCAACTCCGTAGAATTTTGGATCAAGATTTCGTCGACGATCAAGTTCTTCCGGCGCAGGACAGTATGGCTACAGTAAAGAACCTGAAGATTAAGACAGCAACCTGCAAACGCATTATCAAGGAGTTGCATTCTTACGAGAAGGAGGTCGAGAGAGAAGCTGCCAAAACCGCTGACATGAAAGAAAAAGGGGCTGACCCTTATGACCTTAAGCAACAGGAAAACGTTCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTGGAGTCCGCCTTAGCTGATCTGAAAGGAACACTGGATGAACTGGAAAAATCAACACAAGTGAAAGGCCCTGAGTTTGACGATGCTCGGAGCATAATCACTGAGATCGAAAGTTTCCTTAAGACAACAGAGGAATAG

Coding sequence (CDS)

ATGGCTACAGTAAAGAACCTGAAGATTAAGACAGCAACCTGCAAACGCATTATCAAGGAGTTGCATTCTTACGAGAAGGAGGTCGAGAGAGAAGCTGCCAAAACCGCTGACATGAAAGAAAAAGGGGCTGACCCTTATGACCTTAAGCAACAGGAAAACGTTCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTGGAGTCCGCCTTAGCTGATCTGAAAGGAACACTGGATGAACTGGAAAAATCAACACAAGTGAAAGGCCCTGAGTTTGACGATGCTCGGAGCATAATCACTGAGATCGAAAGTTTCCTTAAGACAACAGAGGAATAG

Protein sequence

MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE

Homology

[Close]

BLAST of CmaCh17G000510 vs. Swiss-Prot
Match: TBCA_ARATH (Tubulin-folding cofactor A OS=Arabidopsis thaliana GN=TFCA PE=1 SV=2)

HSP 1 Score: 168.3 bits (425), Expect = 4.8e-41
Identity = 82/112 (73.21%), Postives = 98/112 (87.50%), Query Frame = 1


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT++NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTE 113
           M+PDCHKRLESALADLK TL ELE++ + +GPE +DA+  + ++E    T +
Sbjct: 61  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPTED 112

[Close]

BLAST of CmaCh17G000510 vs. Swiss-Prot
Match: TBCA_HUMAN (Tubulin-specific chaperone A OS=Homo sapiens GN=TBCA PE=1 SV=3)

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-13
Identity = 41/102 (40.20%), Postives = 66/102 (64.71%), Query Frame = 1


Query: 4   VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           V+ +KIKT   KR++KE   YEKE +++  K   M+ +  + YD+K+Q  +L ESRMM+P
Sbjct: 6   VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIP 65

Query: 64  DCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIE 106
           DC +RLE+A  DL+  L E EK  + +  E+ +AR ++  ++
Sbjct: 66  DCQRRLEAAYLDLQRIL-ENEKDLE-EAEEYKEARLVLDSVK 105

[Close]

BLAST of CmaCh17G000510 vs. Swiss-Prot
Match: TBCA_CHICK (Tubulin-specific chaperone A OS=Gallus gallus GN=TBCA PE=1 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-13
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 1


Query: 4   VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           ++ +KIKT   KR+ KE   YEKE +++  K   MK +  D Y +K+Q  +L ESRMM+P
Sbjct: 6   LRQIKIKTGVVKRLAKEKVMYEKEAKQQEEKIEKMKAEACDDYGIKKQAEILQESRMMIP 65

Query: 64  DCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIE 106
           DC +RLE A ADL   L E EK  + +  E+ +ARSI+  ++
Sbjct: 66  DCQRRLEIAHADLTQLL-ENEKELE-EAEEYKEARSILESVK 105

[Close]

BLAST of CmaCh17G000510 vs. Swiss-Prot
Match: TBCA_RAT (Tubulin-specific chaperone A OS=Rattus norvegicus GN=Tbca PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.5e-13
Identity = 41/102 (40.20%), Postives = 65/102 (63.73%), Query Frame = 1


Query: 4   VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           V+ +KIKT   KR++KE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMM+P
Sbjct: 6   VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65

Query: 64  DCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIE 106
           DC +RLE+A  DL+  L E EK  + +  E+ +AR ++  ++
Sbjct: 66  DCQRRLEAAYTDLRQIL-ESEKDLE-EAEEYKEARIVLDSVK 105

[Close]

BLAST of CmaCh17G000510 vs. Swiss-Prot
Match: TBCA_MOUSE (Tubulin-specific chaperone A OS=Mus musculus GN=Tbca PE=1 SV=3)

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-12
Identity = 40/102 (39.22%), Postives = 65/102 (63.73%), Query Frame = 1


Query: 4   VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           V+ +KIKT   +R++KE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMM+P
Sbjct: 6   VRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65

Query: 64  DCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIE 106
           DC +RLE+A  DL+  L E EK  + +  E+ +AR ++  ++
Sbjct: 66  DCQRRLEAAYTDLQQIL-ESEKDLE-EAEEYKEARVVLDSVK 105

[Close]

BLAST of CmaCh17G000510 vs. TrEMBL
Match: A0A0A0KER0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078610 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.2e-45
Identity = 100/113 (88.50%), Postives = 103/113 (91.15%), Query Frame = 1


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRI+KEL SYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 129 MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 188

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE 114
           MVPDCHKRLE ALADLK  L ELEKSTQ KGPEFDDARS I ++ESFLK  EE
Sbjct: 189 MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEE 241

[Close]

BLAST of CmaCh17G000510 vs. TrEMBL
Match: A0A0D2TRL2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G347600 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.2e-43
Identity = 92/112 (82.14%), Postives = 104/112 (92.86%), Query Frame = 1


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATV+NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTE 113
           MVPDCHKRLE++LADLK TL ELE++ + +GPEF+DARS ITE+E   +TTE
Sbjct: 61  MVPDCHKRLEASLADLKATLAELEEANEKEGPEFEDARSTITEVEKLFQTTE 112

[Close]

BLAST of CmaCh17G000510 vs. TrEMBL
Match: A0A0B0MLK3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_26345 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.6e-43
Identity = 92/112 (82.14%), Postives = 104/112 (92.86%), Query Frame = 1


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATV+NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVRNLKIKTSTCKRILKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTE 113
           MVPDCHKRLE++LADLK TL ELE++ + +GPEF+DARS ITE+E   +TTE
Sbjct: 61  MVPDCHKRLEASLADLKATLAELEEANEKEGPEFEDARSTITEVEKLFQTTE 112

[Close]

BLAST of CmaCh17G000510 vs. TrEMBL
Match: A0A061F0Z2_THECC (Tubulin folding cofactor A (KIESEL) OS=Theobroma cacao GN=TCM_025729 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 7.9e-43
Identity = 89/112 (79.46%), Postives = 104/112 (92.86%), Query Frame = 1


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT++NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTE 113
           M+PDC KRLE++LADLKGTL EL+++ + +GPEF+DARS ITE+E   +TTE
Sbjct: 61  MIPDCRKRLEASLADLKGTLAELDETNEKEGPEFEDARSTITEVEKLFQTTE 112

[Close]

BLAST of CmaCh17G000510 vs. TrEMBL
Match: M4M6P8_GOSAR (Tubulin-specific chaperone A OS=Gossypium arboreum PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.0e-42
Identity = 92/113 (81.42%), Postives = 104/113 (92.04%), Query Frame = 1


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLK-QQENVLAESR 60
           MATV+NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMKEKGADPYDLK QQENVLAESR
Sbjct: 1   MATVRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQQENVLAESR 60

Query: 61  MMVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTE 113
           MMVPDCHKRLE++LADLK TL ELE++ + +GPEF+DARS ITE+E   +TTE
Sbjct: 61  MMVPDCHKRLEASLADLKATLAELEEANEKEGPEFEDARSTITEVEKLFQTTE 113

[Close]

BLAST of CmaCh17G000510 vs. TAIR10
Match: AT2G30410.1 (AT2G30410.1 tubulin folding cofactor A (KIESEL))

HSP 1 Score: 168.3 bits (425), Expect = 2.7e-42
Identity = 82/112 (73.21%), Postives = 98/112 (87.50%), Query Frame = 1


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT++NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTE 113
           M+PDCHKRLESALADLK TL ELE++ + +GPE +DA+  + ++E    T +
Sbjct: 61  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPTED 112

[Close]

BLAST of CmaCh17G000510 vs. NCBI nr
Match: gi|449454548|ref|XP_004145016.1| (PREDICTED: tubulin-folding cofactor A [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 3.2e-45
Identity = 100/113 (88.50%), Postives = 103/113 (91.15%), Query Frame = 1


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRI+KEL SYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE 114
           MVPDCHKRLE ALADLK  L ELEKSTQ KGPEFDDARS I ++ESFLK  EE
Sbjct: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEE 113

[Close]

BLAST of CmaCh17G000510 vs. NCBI nr
Match: gi|700191062|gb|KGN46266.1| (hypothetical protein Csa_6G078610 [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 3.2e-45
Identity = 100/113 (88.50%), Postives = 103/113 (91.15%), Query Frame = 1


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRI+KEL SYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 129 MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 188

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE 114
           MVPDCHKRLE ALADLK  L ELEKSTQ KGPEFDDARS I ++ESFLK  EE
Sbjct: 189 MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEE 241

[Close]

BLAST of CmaCh17G000510 vs. NCBI nr
Match: gi|659120230|ref|XP_008460084.1| (PREDICTED: tubulin-folding cofactor A [Cucumis melo])

HSP 1 Score: 188.3 bits (477), Expect = 7.1e-45
Identity = 99/113 (87.61%), Postives = 104/113 (92.04%), Query Frame = 1


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRI+KEL SYEKEVEREA+KTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREASKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE 114
           MVPDCHKRLE ALADLK  L +LEKST+ KGPEFDDARS I +IESFLK TEE
Sbjct: 61  MVPDCHKRLEVALADLKEALADLEKSTEEKGPEFDDARSTINDIESFLKPTEE 113

[Close]

BLAST of CmaCh17G000510 vs. NCBI nr
Match: gi|823199138|ref|XP_012434815.1| (PREDICTED: tubulin-folding cofactor A [Gossypium raimondii])

HSP 1 Score: 183.7 bits (465), Expect = 1.8e-43
Identity = 92/112 (82.14%), Postives = 104/112 (92.86%), Query Frame = 1


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATV+NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTE 113
           MVPDCHKRLE++LADLK TL ELE++ + +GPEF+DARS ITE+E   +TTE
Sbjct: 61  MVPDCHKRLEASLADLKATLAELEEANEKEGPEFEDARSTITEVEKLFQTTE 112

[Close]

BLAST of CmaCh17G000510 vs. NCBI nr
Match: gi|728819044|gb|KHG03018.1| (hypothetical protein F383_26345 [Gossypium arboreum])

HSP 1 Score: 183.3 bits (464), Expect = 2.3e-43
Identity = 92/112 (82.14%), Postives = 104/112 (92.86%), Query Frame = 1


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATV+NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVRNLKIKTSTCKRILKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTE 113
           MVPDCHKRLE++LADLK TL ELE++ + +GPEF+DARS ITE+E   +TTE
Sbjct: 61  MVPDCHKRLEASLADLKATLAELEEANEKEGPEFEDARSTITEVEKLFQTTE 112

The following BLAST results are available for this feature:

BLAST of CmaCh17G000510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TBCA_ARATH	4.8e-41	73.21	Tubulin-folding cofactor A OS=Arabidopsis thaliana GN=TFCA PE=1 SV=2	[more]
TBCA_HUMAN	3.2e-13	40.20	Tubulin-specific chaperone A OS=Homo sapiens GN=TBCA PE=1 SV=3	[more]
TBCA_CHICK	3.2e-13	43.14	Tubulin-specific chaperone A OS=Gallus gallus GN=TBCA PE=1 SV=2	[more]
TBCA_RAT	5.5e-13	40.20	Tubulin-specific chaperone A OS=Rattus norvegicus GN=Tbca PE=1 SV=1	[more]
TBCA_MOUSE	1.6e-12	39.22	Tubulin-specific chaperone A OS=Mus musculus GN=Tbca PE=1 SV=3	[more]

BLAST of CmaCh17G000510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KER0_CUCSA	2.2e-45	88.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078610 PE=4 SV=1	[more]
A0A0D2TRL2_GOSRA	1.2e-43	82.14	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G347600 PE=4 SV=1	[more]
A0A0B0MLK3_GOSAR	1.6e-43	82.14	Uncharacterized protein OS=Gossypium arboreum GN=F383_26345 PE=4 SV=1	[more]
A0A061F0Z2_THECC	7.9e-43	79.46	Tubulin folding cofactor A (KIESEL) OS=Theobroma cacao GN=TCM_025729 PE=4 SV=1	[more]
M4M6P8_GOSAR	3.0e-42	81.42	Tubulin-specific chaperone A OS=Gossypium arboreum PE=2 SV=1	[more]

BLAST of CmaCh17G000510 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30410.1	2.7e-42	73.21	tubulin folding cofactor A (KIESEL)	[more]

BLAST of CmaCh17G000510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454548\|ref\|XP_004145016.1\|	3.2e-45	88.50	PREDICTED: tubulin-folding cofactor A [Cucumis sativus]	[more]
gi\|700191062\|gb\|KGN46266.1\|	3.2e-45	88.50	hypothetical protein Csa_6G078610 [Cucumis sativus]	[more]
gi\|659120230\|ref\|XP_008460084.1\|	7.1e-45	87.61	PREDICTED: tubulin-folding cofactor A [Cucumis melo]	[more]
gi\|823199138\|ref\|XP_012434815.1\|	1.8e-43	82.14	PREDICTED: tubulin-folding cofactor A [Gossypium raimondii]	[more]
gi\|728819044\|gb\|KHG03018.1\|	2.3e-43	82.14	hypothetical protein F383_26345 [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004226	TBCA

Vocabulary: **Biological Process**
Term	Definition
GO:0007021	tubulin complex assembly
GO:0007023	post-chaperonin tubulin folding pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0048487	beta-tubulin binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007023	post-chaperonin tubulin folding pathway
biological_process	GO:0007021	tubulin complex assembly
cellular_component	GO:0005829	cytosol
cellular_component	GO:0045298	tubulin complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005874	microtubule
molecular_function	GO:0048487	beta-tubulin binding
molecular_function	GO:0051082	unfolded protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G000510.1	CmaCh17G000510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004226	Tubulin binding cofactor A	PRODOM	PD010430		coord: 10..102 score: 3.0
IPR004226	Tubulin binding cofactor A	PANTHER	PTHR21500:SF0	TUBULIN-SPECIFIC CHAPERONE A	coord: 1..113 score: 3.1
IPR004226	Tubulin binding cofactor A	PFAM	PF02970	TBCA	coord: 7..86 score: 3.9
IPR004226	Tubulin binding cofactor A	unknown	SSF46988	Tubulin chaperone cofactor A	coord: 3..104 score: 8.37
None	No IPR available	unknown	Coil	Coil	coord: 66..86 score: -coord: 14..41 scor
None	No IPR available	GENE3D	G3DSA:1.20.58.90		coord: 2..105 score: 2.3
None	No IPR available	PANTHER	PTHR21500	TUBULIN-SPECIFIC CHAPERONE A	coord: 1..113 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G000510	Cucsa.362540	Cucumber (Gy14) v1	cgycmaB0998
CmaCh17G000510	Cla006982	Watermelon (97103) v1	cmawmB353
CmaCh17G000510	Csa6G078610	Cucumber (Chinese Long) v2	cmacuB369
CmaCh17G000510	MELO3C022478	Melon (DHL92) v3.5.1	cmameB316
CmaCh17G000510	ClCG06G000640	Watermelon (Charleston Gray)	cmawcgB323
CmaCh17G000510	CSPI06G06100	Wild cucumber (PI 183967)	cmacpiB373
CmaCh17G000510	CmoCh17G000500	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G000510	Lsi09G018810	Bottle gourd (USVL1VR-Ls)	cmalsiB334
CmaCh17G000510	Cp4.1LG12g00440	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G000510	MELO3C022478.2	Melon (DHL92) v3.6.1	cmamedB368
CmaCh17G000510	CsaV3_6G006410	Cucumber (Chinese Long) v3	cmacucB0441
CmaCh17G000510	Cla97C06G109870	Watermelon (97103) v2	cmawmbB370
CmaCh17G000510	Bhi12G002259	Wax gourd	cmawgoB0465
CmaCh17G000510	CsGy6G006080	Cucumber (Gy14) v2	cgybcmaB753
CmaCh17G000510	Carg10183	Silver-seed gourd	carcmaB0314

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G000510	Wild cucumber (PI 183967)	cmacpiB361
CmaCh17G000510	Cucumber (Chinese Long) v2	cmacuB357
CmaCh17G000510	Melon (DHL92) v3.5.1	cmameB343
CmaCh17G000510	Watermelon (Charleston Gray)	cmawcgB319
CmaCh17G000510	Watermelon (97103) v1	cmawmB344
CmaCh17G000510	Cucurbita pepo (Zucchini)	cmacpeB382
CmaCh17G000510	Cucurbita pepo (Zucchini)	cmacpeB402
CmaCh17G000510	Cucurbita pepo (Zucchini)	cmacpeB411
CmaCh17G000510	Bottle gourd (USVL1VR-Ls)	cmalsiB356
CmaCh17G000510	Cucumber (Gy14) v2	cgybcmaB345
CmaCh17G000510	Melon (DHL92) v3.6.1	cmamedB398
CmaCh17G000510	Silver-seed gourd	carcmaB0876
CmaCh17G000510	Silver-seed gourd	carcmaB1321
CmaCh17G000510	Silver-seed gourd	carcmaB1487
CmaCh17G000510	Cucumber (Chinese Long) v3	cmacucB0425
CmaCh17G000510	Watermelon (97103) v2	cmawmbB366
CmaCh17G000510	Cucurbita maxima (Rimu)	cmacmaB249
CmaCh17G000510	Cucurbita maxima (Rimu)	cmacmaB373
CmaCh17G000510	Cucurbita maxima (Rimu)	cmacmaB370
CmaCh17G000510	Cucurbita maxima (Rimu)	cmacmaB388
CmaCh17G000510	Cucumber (Gy14) v1	cgycmaB0715
CmaCh17G000510	Cucurbita moschata (Rifu)	cmacmoB350
CmaCh17G000510	Cucurbita moschata (Rifu)	cmacmoB362
CmaCh17G000510	Cucurbita moschata (Rifu)	cmacmoB365
CmaCh17G000510	Cucurbita moschata (Rifu)	cmacmoB381