CsaV3_6G006410.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AATTCATCTTGTATTGATTCACAAATCATCCACGTGTAGTGACTAAATTCTAAAATATGTGACTATTCAATCTCTGAGATGAAAAATTCCATCAAATTAAGTCTTAAATTACTTTAATTCATGCGCTATTAACTTTGGTTTATTTTAGTGTCACACTCTTGAAAAGAAACTACTAGCTTCATTCCAAAGAGAAAACTAACAGGGTCAATTTTTTTGAAGGACCAAAGAGACATTTTCAAATCTGAAAGTACCAAAGAATCTACCAATTATTGTGGCAGCTCTGCGGTTGGCTCAAGTATTCTCACTTTAAAGTTCTTCTTCTTCACGGGAAAAAACACCTCCCACGCTCTCTCTCTGCGCGCCGCTCAACTTGCCGGATCTCCCTCTCACTCTAGCGATTATCTCTCTCGCCGGACGTCGACTCCCAGCTGTGCACGTACGAACTCCCTCCCGGCCGCGTTTCTTCCGTCTATACCGCCAAACCCGAGCACTGGTTTTTCTGGCTCGCCCCCTGCTATTCTTTGCGCCGCTGGGTCTTATCGTCGCTATTCTCACCGGATCTTGGCTTTGGGGTAAGATTTATTTGATGTGGTTGGGTTTTGTGGAAGATTTTTGAACACCCATTGAACGTTGGCTTCTTCAAATTAGTGATACCCTTAGATGTTCGGTTTGATGCTAAATTTACTCATGATTTTGAAATGCTAGAATTCGAATTAGAAGAATGTTAGTGGGCTGCTCACGAAGTTAAGACGAACTTTTGCAGTGTTGGGTAATTTTAGTGAGTTTTCATAGAGTGTTATTGAATACCCATAATTTTTTTTTTACCCAAATTGATTGACGTTCTTCGTGTTTCGGCTTTAGATTCAAAATTTGGAGAACATTAATGTACTATCCAGCGGGTTACGATTAATGTTGGGAAGATTTTGGTTAAAACGAAGTGGGTAGAGCTTATAATCCCATAAGATCAAGCCATTGACAGTGGGTGGTTTATTTGTAAGTTGTTTGGGATCGGGATGATACTTGAGGGTGTCTGTACACTCTGTAGTTTGGATATCGTAAGTCCTAGAAATGAAAACTTCACCTCTTTTTCAGGAGTGGTTAATCAATTATTTAACAGCCCCTACTCCCTTGTTTTAGAAAAGTGTTTTTAGATAGTGTCTTGTCATAGATCCAGGTTAGAAAGATAATCTGAAATGGCTTATGACAACTTACCTCCATGATACAAGAAATTTCGTGGAAAAGCTGACGTTGAGAACATGCTCCCAGTCTGAATTTTCAATAGCATCCAGGGGTTTAAGATAGAATGTGTACTAATTAATTACCATGAATTCCCACGACCCTTAACAAACTTTAAGAATATGATAACATTGTTTCATAATGGAGCCCCAATTTTCATGCTTTTATGGGAACTGAGAAGCAAAATATTGTCTCTCTTAGAAGCTTCAATTCGGTGAATTAGGTTTATCCTAACTGGGAGACTTGTGGATTCCAAATCCATGATAAATGCTTTTGGTGATAGGTCAGTATGGCTACTGTAAAGAACCTTAAAATTAAGACAGCTACCTGCAAACGCATTCTCAAGGAGTTGTTTTCTTATGAGAAGGAGGTTGAGAGAGAAGCTGCCAAAACTGCTGACATGAAAGAAAAAGGTGCTGACCCTTATGACCTTAAACAACAGGTATGTAAGTAGTGGGTTGTATTCTTAATAATCAAAACTTCAAAAGTTGATAATTATTTGCTTTGACTGCTTGTGGATTTGTTTGTGCCATCTGAAGACCTTAAATAGAAATTCTTAGACATTCAAAAATATAAATTTTTTACCTTAAACAACAGGTATGTAAATGATTTGCATTCTTAATAATCAAAAGTTTGTATGATTATTGTCTGCTTGACTGCTTGTGGATTTGTTTGTGCCATCATTGAGTGAATATATTAAGAAGGATTTTAGCCATTCAAAACCTTTTAATAGACAGAAATCTCCAACATTACACAATAGGAACAATCAAATTTGTGAGCTTAAAGATAAGCGTTTTAAACTAAAAAAAAGAATAATAATATTGTTGAATTTGGAACTTAGAGATGGTTTTCAGGGTAGGACTTTAGCAATTGTTTTTAAGCCTTTAAATTTCTTGTTGCCGTTGAACTTTATTCTAGATATAGAATCAAAACGACTAAAATTTTATTTAGGATAATGGAGATTGGATGTAATGCCATCATCATACAAATCTTCTTCTTCAATTGGTTAAGTATTTTATTACGATTTTACAATTAGCATTCTCATTATAATTAGGAAAATGTGCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTAGAGTTTGCCTTAGCTGATCTGAAAGATGCCCTGGTATCAATAATCATTACCTTCACTTTTCATTCTTCCCATTCTTGCACTTCTGAGGAAAGCTTGATATGAAGGTTATCTGAATAATCATTTTTTCATCTTCTTCATCTACAGGCTGAACTGGAAAAATCAACACAAGAGAAAGGTCCAGAGTTCGACGATGCTCGGAGTACAATCAACGATGTTGAAAGTTTCCTAAAGCCAATAGAGGAATTGTGTAGTGGGTCTGTCACCGCCTGATTGTTTTCAGAAGTTATAATTCAAACTATTGCTTTATTACAGTATTAGTTTTCAATGTTTGGTTTTTGGATGTTATGGTTATACTTTGGAAAGAGTTTCTTCTTCTGTTCTTCATTACTATCACCCAAGTGTAAGACTAAACTCTTCTTCTGTTCTACGTAAGCGTTAATGATGATTAATATGAGAGTTTGGTAACTAAAATAAAT ATGGCTACTGTAAAGAACCTTAAAATTAAGACAGCTACCTGCAAACGCATTCTCAAGGAGTTGTTTTCTTATGAGAAGGAGGTTGAGAGAGAAGCTGCCAAAACTGCTGACATGAAAGAAAAAGGTGCTGACCCTTATGACCTTAAACAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTAGAGTTTGCCTTAGCTGATCTGAAAGATGCCCTGGCTGAACTGGAAAAATCAACACAAGAGAAAGGTCCAGAGTTCGACGATGCTCGGAGTACAATCAACGATGTTGAAAGTTTCCTAAAGCCAATAGAGGAATTGTGTAGTGGGTCTGTCACCGCCTGA ATGGCTACTGTAAAGAACCTTAAAATTAAGACAGCTACCTGCAAACGCATTCTCAAGGAGTTGTTTTCTTATGAGAAGGAGGTTGAGAGAGAAGCTGCCAAAACTGCTGACATGAAAGAAAAAGGTGCTGACCCTTATGACCTTAAACAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTAGAGTTTGCCTTAGCTGATCTGAAAGATGCCCTGGCTGAACTGGAAAAATCAACACAAGAGAAAGGTCCAGAGTTCGACGATGCTCGGAGTACAATCAACGATGTTGAAAGTTTCCTAAAGCCAATAGAGGAATTGTGTAGTGGGTCTGTCACCGCCTGA MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEELCSGSVTA
BLAST of CsaV3_6G006410.1 vs. NCBI nr
Match: XP_004145016.1 (PREDICTED: tubulin-folding cofactor A [Cucumis sativus] >XP_011656707.1 PREDICTED: tubulin-folding cofactor A [Cucumis sativus]) HSP 1 Score: 233.8 bits (595), Expect = 3.1e-58 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
BLAST of CsaV3_6G006410.1 vs. NCBI nr
Match: KGN46266.1 (hypothetical protein Csa_6G078610 [Cucumis sativus]) HSP 1 Score: 233.8 bits (595), Expect = 3.1e-58 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
BLAST of CsaV3_6G006410.1 vs. NCBI nr
Match: XP_008460084.1 (PREDICTED: tubulin-folding cofactor A [Cucumis melo] >XP_008460085.1 PREDICTED: tubulin-folding cofactor A [Cucumis melo]) HSP 1 Score: 208.0 bits (528), Expect = 1.8e-50 Identity = 106/113 (93.81%), Postives = 111/113 (98.23%), Query Frame = 0
BLAST of CsaV3_6G006410.1 vs. NCBI nr
Match: XP_022155762.1 (tubulin-folding cofactor A [Momordica charantia]) HSP 1 Score: 193.0 bits (489), Expect = 6.1e-46 Identity = 99/113 (87.61%), Postives = 108/113 (95.58%), Query Frame = 0
BLAST of CsaV3_6G006410.1 vs. NCBI nr
Match: XP_023006149.1 (tubulin-folding cofactor A [Cucurbita maxima] >XP_023006150.1 tubulin-folding cofactor A [Cucurbita maxima] >XP_023006151.1 tubulin-folding cofactor A [Cucurbita maxima] >XP_023006152.1 tubulin-folding cofactor A [Cucurbita maxima]) HSP 1 Score: 190.7 bits (483), Expect = 3.0e-45 Identity = 100/113 (88.50%), Postives = 103/113 (91.15%), Query Frame = 0
BLAST of CsaV3_6G006410.1 vs. TAIR10
Match: AT2G30410.1 (tubulin folding cofactor A (KIESEL)) HSP 1 Score: 166.4 bits (420), Expect = 1.1e-41 Identity = 82/105 (78.10%), Postives = 96/105 (91.43%), Query Frame = 0
BLAST of CsaV3_6G006410.1 vs. Swiss-Prot
Match: sp|O04350|TBCA_ARATH (Tubulin-folding cofactor A OS=Arabidopsis thaliana OX=3702 GN=TFCA PE=1 SV=2) HSP 1 Score: 166.4 bits (420), Expect = 2.0e-40 Identity = 82/105 (78.10%), Postives = 96/105 (91.43%), Query Frame = 0
BLAST of CsaV3_6G006410.1 vs. Swiss-Prot
Match: sp|P80585|TBCA_CHICK (Tubulin-specific chaperone A OS=Gallus gallus OX=9031 GN=TBCA PE=1 SV=2) HSP 1 Score: 78.6 bits (192), Expect = 5.5e-14 Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 0
BLAST of CsaV3_6G006410.1 vs. Swiss-Prot
Match: sp|O75347|TBCA_HUMAN (Tubulin-specific chaperone A OS=Homo sapiens OX=9606 GN=TBCA PE=1 SV=3) HSP 1 Score: 76.3 bits (186), Expect = 2.7e-13 Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = 0
BLAST of CsaV3_6G006410.1 vs. Swiss-Prot
Match: sp|Q6PEC1|TBCA_RAT (Tubulin-specific chaperone A OS=Rattus norvegicus OX=10116 GN=Tbca PE=1 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 2.7e-13 Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 0
BLAST of CsaV3_6G006410.1 vs. Swiss-Prot
Match: sp|P48428|TBCA_MOUSE (Tubulin-specific chaperone A OS=Mus musculus OX=10090 GN=Tbca PE=1 SV=3) HSP 1 Score: 74.7 bits (182), Expect = 7.9e-13 Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = 0
BLAST of CsaV3_6G006410.1 vs. TrEMBL
Match: tr|A0A0A0KER0|A0A0A0KER0_CUCSA (Tubulin-specific chaperone A OS=Cucumis sativus OX=3659 GN=Csa_6G078610 PE=3 SV=1) HSP 1 Score: 233.8 bits (595), Expect = 2.1e-58 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
BLAST of CsaV3_6G006410.1 vs. TrEMBL
Match: tr|A0A1S3CBQ5|A0A1S3CBQ5_CUCME (Tubulin-specific chaperone A OS=Cucumis melo OX=3656 GN=LOC103499001 PE=3 SV=1) HSP 1 Score: 208.0 bits (528), Expect = 1.2e-50 Identity = 106/113 (93.81%), Postives = 111/113 (98.23%), Query Frame = 0
BLAST of CsaV3_6G006410.1 vs. TrEMBL
Match: tr|A0A0B0MLK3|A0A0B0MLK3_GOSAR (Tubulin-specific chaperone A OS=Gossypium arboreum OX=29729 GN=F383_26345 PE=3 SV=1) HSP 1 Score: 176.0 bits (445), Expect = 5.1e-41 Identity = 90/112 (80.36%), Postives = 101/112 (90.18%), Query Frame = 0
BLAST of CsaV3_6G006410.1 vs. TrEMBL
Match: tr|A0A2P5YEY3|A0A2P5YEY3_GOSBA (Tubulin-specific chaperone A OS=Gossypium barbadense OX=3634 GN=GOBAR_AA06454 PE=3 SV=1) HSP 1 Score: 176.0 bits (445), Expect = 5.1e-41 Identity = 90/112 (80.36%), Postives = 101/112 (90.18%), Query Frame = 0
BLAST of CsaV3_6G006410.1 vs. TrEMBL
Match: tr|A0A1U8PW82|A0A1U8PW82_GOSHI (Tubulin-specific chaperone A OS=Gossypium hirsutum OX=3635 GN=LOC107963369 PE=3 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 1.1e-40 Identity = 89/112 (79.46%), Postives = 101/112 (90.18%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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