CsaV3_5G028830 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G028830
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description50S ribosomal protein-like protein
Locationchr5 : 23951396 .. 23953158 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAATTTTACTGGGAAAATGAACCAACTTTTTTTCCTCTCTTCTCTTTCTTCAACATTCAATAAATTTCTCTTTTCAATTCAAAGTTTTAGACTAAAAAAATATAATGAAACCCCAAAAAGAAGAAAATAAGAAAAATAAAACCCCCAATTCCCAACGCTCTCAAAAATCCTCTCCGAATTCCCTTCTTCAATCATTACAAGATTTTCAAATTCCATTCCAAAACTCCATCCATCGATTCAATAATTCTTCTTCCTCTGACCTTTCTCCATGGCGTCGCTTCTCAAATTCAAGCTCCTTCCGACGCACTGCGGCGTCGCTCAGAGTCCTACTTTAAGCCCTAGGACCAGTCCTCTCGTTCACCTCCGCCGTCGGAAAACCACTCTTCGGATGCTTCTCACTCGGAATTCCGGCCGTCGGTCTCCTCGTCGCCGCTCCTTACCGGAGAATAAGAACAGAGACGACCGTAAGGGTTTGTCGCGGAGTAACACGTTGAAGGATTTGTTCGTTTCCTCGCCACCGTATCTTGGAACTGACTGTGATGTTCACCAGACGGCGGTCACGGCTCCAACCCGGAACGTGACTCCAGTTTGTGAGAAGGAGAAGGAGGAGGGTCACGTTGGATCACCCGGTTGGAATCCCGGTTCCCCTAGACCGGGTTGGACCGGTTTCCGATATAAATACTTGCTTCGGAAAACTTGGCGGCCGGTGCTCGTCGGAATCCCCGAGTAATGGATTCTCTTTTTTTTTTTTTTTTTTTTTAGTTTTAAAAGAAAACATCTTTTAATTAATTTAAAAATATATCTAATCTAATATTTCTATGTTTTTTTAGTATAGATTTCAATCTTTACTTAAAATAGGGATGGGGGAAAGGATTAAGATCTTAATCAAGTGGGTTTGGGGAAATAATAATTTGTTGCTATGGAAAATTATGAATAGATTTCCCATGAGTGGGAATTTGCTTATTTTTCTGTTCAATTTTACGCTTGTTTAGTTTTTCTAATCATATGTTAATTAGTCAAATTAACTCTATACAATTCGTAGTACCAAATTTAAGGCTTAAACCTTGATTGATTTTCTTGATTGTTTTATTATATAGTTTATGAAGTTGTATTTAAAATCTTGTTCTTAACTTTGTATGGTTTAGTTGGAGTGAGCAAATCCTAAACCAAATCTTTGATTGACCCCACTTTGACCATAGTCAAGAATAGTTAGTGAAATTTGAGTTAACAAATCTACTAGTGGCTTAACTCGATTTTAAAAAAAAAAAATTGATGAAGATTGTCATCCATCGGTTCTTTTTATATCCTAAGTATCGTTCTTCCACAAATTTGTGGACTTCCAAATCTAGAAATTTTAACACCTTCCATCCCATAGTTGGGGGAACACGTCGTCCTCTTGTATATACTATCATGCGAGTGTTTTCAGTGCACATGCTCAACCCACCTAATGCCTTCATTTTATGTGTGTACATCCGTTGAACATTCATGTGCACACGTACAATGGGTTGTTGGTTGAACATGCATGGAGCATCGGGTGGACATCATGTGGACTATTTGGATTTTGTACTAGGTGGTAGGTTACTCAAAAGTTGAAGTTCTTATCAAATAACAAATCGTTCGTATAAATATGGAAGTGTAATCATGTTTGGCATAAATTCTATTTAGAAACTATTAACTTTTGAACTCATTATTATTATTATTATCATCATCATCATCATCAATGATATGTGTTCTAAGGCCACACTTTAACGAGTTTGACCGT

mRNA sequence

ATGGCGTCGCTTCTCAAATTCAAGCTCCTTCCGACGCACTGCGGCGTCGCTCAGAGTCCTACTTTAAGCCCTAGGACCAGTCCTCTCGTTCACCTCCGCCGTCGGAAAACCACTCTTCGGATGCTTCTCACTCGGAATTCCGGCCGTCGGTCTCCTCGTCGCCGCTCCTTACCGGAGAATAAGAACAGAGACGACCGTAAGGGTTTGTCGCGGAGTAACACGTTGAAGGATTTGTTCGTTTCCTCGCCACCGTATCTTGGAACTGACTGTGATGTTCACCAGACGGCGGTCACGGCTCCAACCCGGAACGTGACTCCAGTTTGTGAGAAGGAGAAGGAGGAGGGTCACGTTGGATCACCCGGTTGGAATCCCGGTTCCCCTAGACCGGGTTGGACCGGTTTCCGATATAAATACTTGCTTCGGAAAACTTGGCGGCCGGTGCTCGTCGGAATCCCCGAGTAA

Coding sequence (CDS)

ATGGCGTCGCTTCTCAAATTCAAGCTCCTTCCGACGCACTGCGGCGTCGCTCAGAGTCCTACTTTAAGCCCTAGGACCAGTCCTCTCGTTCACCTCCGCCGTCGGAAAACCACTCTTCGGATGCTTCTCACTCGGAATTCCGGCCGTCGGTCTCCTCGTCGCCGCTCCTTACCGGAGAATAAGAACAGAGACGACCGTAAGGGTTTGTCGCGGAGTAACACGTTGAAGGATTTGTTCGTTTCCTCGCCACCGTATCTTGGAACTGACTGTGATGTTCACCAGACGGCGGTCACGGCTCCAACCCGGAACGTGACTCCAGTTTGTGAGAAGGAGAAGGAGGAGGGTCACGTTGGATCACCCGGTTGGAATCCCGGTTCCCCTAGACCGGGTTGGACCGGTTTCCGATATAAATACTTGCTTCGGAAAACTTGGCGGCCGGTGCTCGTCGGAATCCCCGAGTAA

Protein sequence

MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRSLPENKNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVGSPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE
Homology
[Close]
BLAST of CsaV3_5G028830 vs. NCBI nr
Match: XP_011655483.1 (PREDICTED: uncharacterized protein LOC105435544 [Cucumis sativus] >KGN51540.1 hypothetical protein Csa_5G576820 [Cucumis sativus])

HSP 1 Score: 315.1 bits (806), Expect = 1.3e-82
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRSLPEN 60
           MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRSLPEN
Sbjct: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRSLPEN 60

Query: 61  KNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVGSP 120
           KNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVGSP
Sbjct: 61  KNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVGSP 120

Query: 121 GWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 154
           GWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE
Sbjct: 121 GWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 153

[Close]
BLAST of CsaV3_5G028830 vs. NCBI nr
Match: XP_008467191.1 (PREDICTED: uncharacterized protein LOC103504599 [Cucumis melo])

HSP 1 Score: 292.0 bits (746), Expect = 1.2e-75
Identity = 145/155 (93.55%), Postives = 149/155 (96.13%), Query Frame = 0 

Query: 1   MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRR-RSLP 60
           MASLLKFKLLPTH CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRR R+LP
Sbjct: 1   MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP 60

Query: 61  ENKNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVG 120
           ENK RDD KGLSRSNTLKDLFVSSPPY+GTDCDVH+TAVTAPT+N TPVCEKEKEEG VG
Sbjct: 61  ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG 120

Query: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 154
           SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE
Sbjct: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 155

[Close]
BLAST of CsaV3_5G028830 vs. NCBI nr
Match: XP_023513243.1 (uncharacterized protein LOC111777755 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.1 bits (632), Expect = 2.0e-62
Identity = 122/153 (79.74%), Postives = 135/153 (88.24%), Query Frame = 0 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRSLPEN 60
           MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRRR+LP+ 
Sbjct: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPD- 60

Query: 61  KNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVGSP 120
           K RDD K LSRSNTLKDLFVSSPPY  ++C++++T   AP RNVTPVC   +E+G +G  
Sbjct: 61  KKRDDHKDLSRSNTLKDLFVSSPPYDESECEINETVAAAPIRNVTPVC--REEDGEIGPT 120

Query: 121 GWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 154
           GW+PGSPRPGWTGFRYKYLLRKTWRP+L GIPE
Sbjct: 121 GWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE 150

[Close]
BLAST of CsaV3_5G028830 vs. NCBI nr
Match: XP_023550276.1 (uncharacterized protein LOC111808499 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.7 bits (613), Expect = 3.2e-60
Identity = 122/153 (79.74%), Postives = 133/153 (86.93%), Query Frame = 0 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRSLPEN 60
           MASLLKFKLL THCGVAQSPTLSPRTSPL+HLRRRKTTLRMLLTRN  RRSPRR +LPE 
Sbjct: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPE- 60

Query: 61  KNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVGSP 120
           KN DDRK L+R N LKDLFVSSPPY GTD  +++TA+ AP RNVTPVC K+K + H+GSP
Sbjct: 61  KNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPFRNVTPVC-KKKADDHIGSP 120

Query: 121 GWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 154
           G  PGSPRPGWTGFRYKYLL+KTWRPVL GIPE
Sbjct: 121 GCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE 151

[Close]
BLAST of CsaV3_5G028830 vs. NCBI nr
Match: XP_022963063.1 (uncharacterized protein LOC111463373 [Cucurbita moschata])

HSP 1 Score: 238.4 bits (607), Expect = 1.6e-59
Identity = 119/153 (77.78%), Postives = 132/153 (86.27%), Query Frame = 0 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRSLPEN 60
           MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRRR+LP+ 
Sbjct: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPD- 60

Query: 61  KNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVGSP 120
           K RDD K LSRSNTLKDLFVSSPPY  +D ++++T   AP RNVTPVC   +E+G +G  
Sbjct: 61  KKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTPVC--REEDGEIGPT 120

Query: 121 GWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 154
            W+PGSPRPGWTGFR+KYLLRKTWRP+L  IPE
Sbjct: 121 SWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE 150

[Close]
BLAST of CsaV3_5G028830 vs. TAIR10
Match: AT1G66890.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-14
Identity = 72/164 (43.90%), Postives = 88/164 (53.66%), Query Frame = 0 

Query: 3   SLLKFKLLPTHCG-VAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGR-RSPR-RRSLPE 62
           SL KFKLL THC  VA+SPT     SP++HLRRRK TLR+LLTR+S R R P  + ++ E
Sbjct: 2   SLQKFKLLATHCSTVAESPT----RSPVIHLRRRK-TLRLLLTRSSDRWRLPEIQNNVDE 61

Query: 63  NKNRDDRKGLSRSNTLKDLFVSSPPYL----------GTDCDVHQTAVTAPTRNVTPVCE 122
           +K  D R  +  S  L DLFVSSP             GT  +V       P   V+    
Sbjct: 62  SKKTDKRGKIRSSRKLGDLFVSSPXXXXXXXXXXXXKGTKMEVEMER-DVPVNGVSNNA- 121

Query: 123 KEKEEGHVGSPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 154
              EE      G+N GS RP  +      LLR++WRPVLV IPE
Sbjct: 122 GFGEEITARRVGFN-GSVRPMSSVTLRCRLLRRSWRPVLVTIPE 157

[Close]
BLAST of CsaV3_5G028830 vs. TAIR10
Match: AT5G16200.1 (50S ribosomal protein-related)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09
Identity = 60/171 (35.09%), Postives = 82/171 (47.95%), Query Frame = 0 

Query: 1   MASLLKFKLLPTH----CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS-GRRSPRRR 60
           ++ L KFKL   H       A SPT+SP  SP+ +LRRRK TLRML  ++S  RR   R+
Sbjct: 3   LSRLHKFKLFAAHRSLEASTAGSPTMSPTKSPVFNLRRRK-TLRMLFDKSSDSRRRNLRQ 62

Query: 61  SLPENKNRDDRKGLSRSNT-------LKDLFVS--SPPYLGTDCDV----HQTAVTAPTR 120
            L E+   D   G  +          L++L V+  SPPY G + D+     + +  +P  
Sbjct: 63  ILEESPESDGNSGNKKRGNHRATRRKLRELLVTSPSPPYKGRE-DIDGIGEERSEISPLN 122

Query: 121 NVTPVCEKEKEEGHVGSPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 154
             +    +E      GS G            FR + +LRK WRPVLV IPE
Sbjct: 123 VTSNGDGRELTARRFGSSG--------SVQSFRLR-ILRKPWRPVLVSIPE 162

[Close]
BLAST of CsaV3_5G028830 vs. TAIR10
Match: AT1G68430.1 (unknown protein)

HSP 1 Score: 41.2 bits (95), Expect = 6.8e-04
Identity = 25/36 (69.44%), Postives = 27/36 (75.00%), Query Frame = 0 

Query: 1  MASLLKFKLLPTHCGV-AQSPTL--SPRTSPLVHLR 34
          MA+L +FK L T CGV AQSPT   SPRTSPLV LR
Sbjct: 1  MATLQRFKFLGTQCGVAAQSPTRSPSPRTSPLVQLR 36

[Close]
BLAST of CsaV3_5G028830 vs. TrEMBL
Match: tr|A0A0A0KPK6|A0A0A0KPK6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576820 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 8.8e-83
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRSLPEN 60
           MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRSLPEN
Sbjct: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRSLPEN 60

Query: 61  KNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVGSP 120
           KNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVGSP
Sbjct: 61  KNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVGSP 120

Query: 121 GWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 154
           GWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE
Sbjct: 121 GWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 153

[Close]
BLAST of CsaV3_5G028830 vs. TrEMBL
Match: tr|A0A1S3CSY3|A0A1S3CSY3_CUCME (uncharacterized protein LOC103504599 OS=Cucumis melo OX=3656 GN=LOC103504599 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 8.0e-76
Identity = 145/155 (93.55%), Postives = 149/155 (96.13%), Query Frame = 0 

Query: 1   MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRR-RSLP 60
           MASLLKFKLLPTH CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRR R+LP
Sbjct: 1   MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP 60

Query: 61  ENKNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVG 120
           ENK RDD KGLSRSNTLKDLFVSSPPY+GTDCDVH+TAVTAPT+N TPVCEKEKEEG VG
Sbjct: 61  ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG 120

Query: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 154
           SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE
Sbjct: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 155

[Close]
BLAST of CsaV3_5G028830 vs. TrEMBL
Match: tr|A0A2P6R1J5|A0A2P6R1J5_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0434621 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.7e-28
Identity = 82/154 (53.25%), Postives = 94/154 (61.04%), Query Frame = 0 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRSLPEN 60
           MA+L KFKLL  HCG AQSPT SPRTSPL+ L RRK +L MLL+R+  RRS RR+  P  
Sbjct: 12  MATLQKFKLLALHCGAAQSPTRSPRTSPLIQLPRRKPSLLMLLSRSGSRRSTRRQDQPVP 71

Query: 61  KNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEG-HVGS 120
                     R N+LKDLFVSSPP+                   +   EK +E G  V +
Sbjct: 72  VQPPP----ERRNSLKDLFVSSPPF-----------------EESEKIEKRREFGLVVVA 131

Query: 121 PGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 154
            G  PGSPRPGWTGFRYK LLR+ WRPVLV IPE
Sbjct: 132 GGVGPGSPRPGWTGFRYKSLLRRAWRPVLVTIPE 144

[Close]
BLAST of CsaV3_5G028830 vs. TrEMBL
Match: tr|A0A067K324|A0A067K324_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_18374 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 9.0e-27
Identity = 83/172 (48.26%), Postives = 101/172 (58.72%), Query Frame = 0 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLR-RRKTTLRMLLTRN--SGRRSPRRRS- 60
           MA+L KFKLL T CGVA+SPT SPRTSP+VHLR R+KTTLRMLLTR+  SGRRSPRR   
Sbjct: 1   MATLQKFKLLATQCGVAESPTRSPRTSPIVHLRSRKKTTLRMLLTRSSGSGRRSPRRHEP 60

Query: 61  --LPENKNRDDRKGLSRSNTLKDLFVSSPPY-------------LGTDCDVHQTAVTAPT 120
             +P  +         + +TLKDLFVSSP +             +G  C+V +  V    
Sbjct: 61  SPIPHQQRLLPPLPEKKRDTLKDLFVSSPSFEEEEENKDKVREMIGGKCEVFRMRVN--- 120

Query: 121 RNVTPVCEKEKEEGHVGSPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 154
                           G      GSPRPGW GFR++YL+R+ WRP+LVGIPE
Sbjct: 121 ----------------GLGAELAGSPRPGWIGFRHRYLIRRAWRPMLVGIPE 153

[Close]
BLAST of CsaV3_5G028830 vs. TrEMBL
Match: tr|A0A2C9VNL8|A0A2C9VNL8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G065600 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.2e-25
Identity = 80/160 (50.00%), Postives = 97/160 (60.62%), Query Frame = 0 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRN--SGRRSPRRRSLP 60
           MA+L KFKLL T CGVAQSPT SPRTSPLVHLRR+KTTLRMLLTR+  SGR SP R   P
Sbjct: 1   MATLQKFKLLATQCGVAQSPTRSPRTSPLVHLRRKKTTLRMLLTRSSGSGRLSPPRHEPP 60

Query: 61  ENKNRDDRKG---LSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCE--KEKE 120
               +          + +TLKDLFVSSPP    +    +         +   CE  + + 
Sbjct: 61  PVHRQPAILAPLPEKKRDTLKDLFVSSPPPFENEGSKGEAREV-----IGGKCEVFRMRV 120

Query: 121 EGHVGSPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 154
            G +  P    GSPRPGW GFR++ L+R+ WRP+L  IPE
Sbjct: 121 NGLLVEPA---GSPRPGWVGFRHRSLIRRAWRPLLAAIPE 152

The following BLAST results are available for this feature:
BLAST of CsaV3_5G028830 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011655483.11.3e-82100.00PREDICTED: uncharacterized protein LOC105435544 [Cucumis sativus] >KGN51540.1 hy... [more]
XP_008467191.11.2e-7593.55PREDICTED: uncharacterized protein LOC103504599 [Cucumis melo][more]
XP_023513243.12.0e-6279.74uncharacterized protein LOC111777755 [Cucurbita pepo subsp. pepo][more]
XP_023550276.13.2e-6079.74uncharacterized protein LOC111808499 [Cucurbita pepo subsp. pepo][more]
XP_022963063.11.6e-5977.78uncharacterized protein LOC111463373 [Cucurbita moschata][more]
BLAST of CsaV3_5G028830 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G66890.12.5e-1443.90FUNCTIONS IN: molecular_function unknown[more]
AT5G16200.11.4e-0935.0950S ribosomal protein-related[more]
AT1G68430.16.8e-0469.44unknown protein[more]
BLAST of CsaV3_5G028830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G028830 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KPK6|A0A0A0KPK6_CUCSA8.8e-83100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576820 PE=4 SV=1[more]
tr|A0A1S3CSY3|A0A1S3CSY3_CUCME8.0e-7693.55uncharacterized protein LOC103504599 OS=Cucumis melo OX=3656 GN=LOC103504599 PE=... [more]
tr|A0A2P6R1J5|A0A2P6R1J5_ROSCH3.7e-2853.25Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0434621 PE=4... [more]
tr|A0A067K324|A0A067K324_JATCU9.0e-2748.26Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_18374 PE=4 SV=1[more]
tr|A0A2C9VNL8|A0A2C9VNL8_MANES2.2e-2550.00Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G065600 PE=4 SV=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G028830.1CsaV3_5G028830.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..75
NoneNo IPR availablePANTHERPTHR34542:SF150S RIBOSOMAL PROTEIN RELATED PROTEINcoord: 1..153
NoneNo IPR availablePANTHERPTHR34542FAMILY NOT NAMEDcoord: 1..153

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G028830CSPI05G20030Wild cucumber (PI 183967)cpicucB284
CsaV3_5G028830Cucsa.280750Cucumber (Gy14) v1cgycucB428
CsaV3_5G028830CmaCh15G009250Cucurbita maxima (Rimu)cmacucB0355
CsaV3_5G028830CmaCh04G020760Cucurbita maxima (Rimu)cmacucB0888
CsaV3_5G028830CmoCh04G021710Cucurbita moschata (Rifu)cmocucB0878
CsaV3_5G028830CmoCh15G009640Cucurbita moschata (Rifu)cmocucB0350
CsaV3_5G028830Cp4.1LG13g06940Cucurbita pepo (Zucchini)cpecucB0212
CsaV3_5G028830Cp4.1LG01g18180Cucurbita pepo (Zucchini)cpecucB0536
CsaV3_5G028830Carg26600Silver-seed gourdcarcucB0303
CsaV3_5G028830Carg24927Silver-seed gourdcarcucB0833
CsaV3_5G028830Cla003888Watermelon (97103) v1cucwmB441
CsaV3_5G028830MELO3C005343Melon (DHL92) v3.5.1cucmeB350
CsaV3_5G028830ClCG01G005860Watermelon (Charleston Gray)cucwcgB394
CsaV3_5G028830Lsi09G006200Bottle gourd (USVL1VR-Ls)cuclsiB352
CsaV3_5G028830MELO3C005343.2Melon (DHL92) v3.6.1cucmedB342
CsaV3_5G028830Cla97C01G006130Watermelon (97103) v2cucwmbB359
CsaV3_5G028830Bhi12G000730Wax gourdcucwgoB461
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G028830Bottle gourd (USVL1VR-Ls)cuclsiB391
CsaV3_5G028830Melon (DHL92) v3.5.1cucmeB376
CsaV3_5G028830Melon (DHL92) v3.6.1cucmedB366
CsaV3_5G028830Watermelon (Charleston Gray)cucwcgB412
CsaV3_5G028830Watermelon (97103) v1cucwmB424
CsaV3_5G028830Watermelon (97103) v2cucwmbB394
CsaV3_5G028830Wax gourdcucwgoB519
CsaV3_5G028830Cucumber (Chinese Long) v3cuccucB199
CsaV3_5G028830Silver-seed gourdcarcucB0887
CsaV3_5G028830Silver-seed gourdcarcucB1098
CsaV3_5G028830Cucumber (Gy14) v2cgybcucB232
CsaV3_5G028830Cucumber (Gy14) v2cgybcucB239
CsaV3_5G028830Cucumber (Gy14) v1cgycucB440
CsaV3_5G028830Cucurbita maxima (Rimu)cmacucB0497
CsaV3_5G028830Cucurbita maxima (Rimu)cmacucB0875
CsaV3_5G028830Cucurbita moschata (Rifu)cmocucB0486
CsaV3_5G028830Cucurbita moschata (Rifu)cmocucB0863
CsaV3_5G028830Cucurbita pepo (Zucchini)cpecucB0053
CsaV3_5G028830Cucurbita pepo (Zucchini)cpecucB0539
CsaV3_5G028830Wild cucumber (PI 183967)cpicucB302