CmaCh15G009250 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh15G009250
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description50S ribosomal protein-related, putative
LocationCma_Chr15 : 4858212 .. 4858667 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCGCTTCTCAAATTCAAGCTCCTTTCGACGCACTGCGGCGTCGCTCAGAGTCCCACTTTAAGCCCTAGAACTAGTCCTCTCCTTCACCTCCGCCGCCGGAAAACCACTCTGCGGATGCTTCTCACTCGGAATTTCAGCCGCCGGTCTCCTCGCCGCTGCGCCTTGCCGGAGAAGAACATAGACGACCGTAAGGATTTGTCTCGAGGCAACAAGTTGAAGGACTTGTTCGTTTCGTCGCCGCCATATGATGGAACCGATGGCAGGATTAACGAGACGGCGATCGCGGCTCCTATCCGGAACGTGACTCCGGTTTGTAAGAAGAAAGCGAACGATCATATTGGATCGGCCGGTTGCAAACCCGGTTCTCCTAGACCGGGTTGGACCGGCTTCCGGTACAAATATTTGCTTCAGAAAACTTGGCGGCCGGTTCTCGCCGGAATCCCCGAGTAA

mRNA sequence

ATGGCGTCGCTTCTCAAATTCAAGCTCCTTTCGACGCACTGCGGCGTCGCTCAGAGTCCCACTTTAAGCCCTAGAACTAGTCCTCTCCTTCACCTCCGCCGCCGGAAAACCACTCTGCGGATGCTTCTCACTCGGAATTTCAGCCGCCGGTCTCCTCGCCGCTGCGCCTTGCCGGAGAAGAACATAGACGACCGTAAGGATTTGTCTCGAGGCAACAAGTTGAAGGACTTGTTCGTTTCGTCGCCGCCATATGATGGAACCGATGGCAGGATTAACGAGACGGCGATCGCGGCTCCTATCCGGAACGTGACTCCGGTTTGTAAGAAGAAAGCGAACGATCATATTGGATCGGCCGGTTGCAAACCCGGTTCTCCTAGACCGGGTTGGACCGGCTTCCGGTACAAATATTTGCTTCAGAAAACTTGGCGGCCGGTTCTCGCCGGAATCCCCGAGTAA

Coding sequence (CDS)

ATGGCGTCGCTTCTCAAATTCAAGCTCCTTTCGACGCACTGCGGCGTCGCTCAGAGTCCCACTTTAAGCCCTAGAACTAGTCCTCTCCTTCACCTCCGCCGCCGGAAAACCACTCTGCGGATGCTTCTCACTCGGAATTTCAGCCGCCGGTCTCCTCGCCGCTGCGCCTTGCCGGAGAAGAACATAGACGACCGTAAGGATTTGTCTCGAGGCAACAAGTTGAAGGACTTGTTCGTTTCGTCGCCGCCATATGATGGAACCGATGGCAGGATTAACGAGACGGCGATCGCGGCTCCTATCCGGAACGTGACTCCGGTTTGTAAGAAGAAAGCGAACGATCATATTGGATCGGCCGGTTGCAAACCCGGTTCTCCTAGACCGGGTTGGACCGGCTTCCGGTACAAATATTTGCTTCAGAAAACTTGGCGGCCGGTTCTCGCCGGAATCCCCGAGTAA

Protein sequence

MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLSRGNKLKDLFVSSPPYDGTDGRINETAIAAPIRNVTPVCKKKANDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE
Homology
[Close]
BLAST of CmaCh15G009250 vs. TrEMBL
Match: A0A0A0KPK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576820 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.6e-61
Identity = 122/153 (79.74%), Postives = 131/153 (85.62%), Query Frame = 1 

Query: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPE- 60
           MASLLKFKLL THCGVAQSPTLSPRTSPL+HLRRRKTTLRMLLTRN  RRSPRR +LPE 
Sbjct: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRSLPEN 60

Query: 61  KNIDDRKDLSRGNKLKDLFVSSPPYDGTDGRINETAIAAPIRNVTPVC-KKKANDHIGSA 120
           KN DDRK LSR N LKDLFVSSPPY GTD  +++TA+ AP RNVTPVC K+K   H+GS 
Sbjct: 61  KNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVGSP 120

Query: 121 GCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE 152
           G  PGSPRPGWTGFRYKYLL+KTWRPVL GIPE
Sbjct: 121 GWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 153

[Close]
BLAST of CmaCh15G009250 vs. TrEMBL
Match: M5XPV3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022537mg PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.2e-27
Identity = 81/153 (52.94%), Postives = 96/153 (62.75%), Query Frame = 1 

Query: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRC-ALPE 60
           M +L KFKLL+T CGVAQSPT SPRTSPL+ LRRRK TL MLLTR+ SRR      +LP+
Sbjct: 1   MGTLQKFKLLATQCGVAQSPTRSPRTSPLIQLRRRKPTLLMLLTRSSSRRRDTPVQSLPQ 60

Query: 61  KNIDDRKDLSRGNKLKDLFVSSPPYDGTDGRINETAIAAPIRNVTPVCKKKANDHIGSAG 120
           K         + + LKDLFVSSPP++  + R +E         V       A   +G  G
Sbjct: 61  K----APAPVQRHSLKDLFVSSPPFELNEKRKSEIDTRQEFGLVV------AGKAVGGVG 120

Query: 121 CKPGSPRPGWTGFRYK-YLLQKTWRPVLAGIPE 152
             PGSPRPGWTGFRYK  LL++ WRPVL  IPE
Sbjct: 121 --PGSPRPGWTGFRYKSLLLRRAWRPVLVTIPE 141

[Close]
BLAST of CmaCh15G009250 vs. TrEMBL
Match: A0A067K324_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18374 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-26
Identity = 81/167 (48.50%), Postives = 101/167 (60.48%), Query Frame = 1 

Query: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLR-RRKTTLRMLLTRN--FSRRSPRR--- 60
           MA+L KFKLL+T CGVA+SPT SPRTSP++HLR R+KTTLRMLLTR+    RRSPRR   
Sbjct: 1   MATLQKFKLLATQCGVAESPTRSPRTSPIVHLRSRKKTTLRMLLTRSSGSGRRSPRRHEP 60

Query: 61  ----------CALPEKNIDDRKDLSRGNKLKDLFVSSPPYDGTDGRINETAIAAPIRNVT 120
                       LPEK  D          LKDLFVSSP ++  +   N+  +   I    
Sbjct: 61  SPIPHQQRLLPPLPEKKRD---------TLKDLFVSSPSFE--EEEENKDKVREMIGGKC 120

Query: 121 PVCKKKANDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE 152
            V + + N   G      GSPRPGW GFR++YL+++ WRP+L GIPE
Sbjct: 121 EVFRMRVN---GLGAELAGSPRPGWIGFRHRYLIRRAWRPMLVGIPE 153

[Close]
BLAST of CmaCh15G009250 vs. TrEMBL
Match: V4UBZ9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016989mg PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-26
Identity = 81/167 (48.50%), Postives = 104/167 (62.28%), Query Frame = 1 

Query: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRR-------SPR 60
           MA+L KFK+L+T CGVAQSPT SPRTSPL+   R+KTTLRMLLTR+ S R       +P+
Sbjct: 1   MATLQKFKILATQCGVAQSPTRSPRTSPLVQFPRKKTTLRMLLTRSSSSRCKEITLPTPK 60

Query: 61  RCALPEKNIDDRKDL---SRGNKLKDLFVSSPPYD--GTDGRINETA--IAAPIRNVTPV 120
             A+ ++   D +DL      NKLKDLFVSS   D  G   R N+ +   +  IR+ T V
Sbjct: 61  EIAVDDQKQRDCRDLLVVQSRNKLKDLFVSSFDEDEEGQQQRQNKVSDNDSGKIRDKTEV 120

Query: 121 CK--KKANDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE 152
            +  KK +      G +PG  RP W GFR++YLL+K WRP+L  IPE
Sbjct: 121 LRAMKKLHGSGAGVGDEPGLSRPVWVGFRHRYLLRKAWRPMLLTIPE 167

[Close]
BLAST of CmaCh15G009250 vs. TrEMBL
Match: A0A067GBD7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042178mg PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-26
Identity = 78/165 (47.27%), Postives = 103/165 (62.42%), Query Frame = 1 

Query: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRR-------SPR 60
           MA+L KFK+L+T CGVAQSPT SPRTSPL+   R+KTTLRMLLTR+ S R       +P+
Sbjct: 1   MATLQKFKILATQCGVAQSPTRSPRTSPLVQFPRKKTTLRMLLTRSSSSRCKEITLPTPK 60

Query: 61  RCALPEKNIDDRKDL---SRGNKLKDLFVSSPPYDGTDGRINETA--IAAPIRNVTPVCK 120
             A+ ++   D +DL      NKLKDLFVSS   +    + N+ +   +  IR+ T V +
Sbjct: 61  EIAVDDQKQRDSRDLLVVQSRNKLKDLFVSSFDEEEQQQQQNKVSDNDSGKIRDKTEVLR 120

Query: 121 --KKANDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE 152
             KK +      G +PG  RP W GFR++YLL+K WRP+L  IPE
Sbjct: 121 AMKKLHGSGAGVGDEPGLSRPVWVGFRHRYLLRKAWRPMLLTIPE 165

[Close]
BLAST of CmaCh15G009250 vs. TAIR10
Match: AT1G68430.1 (AT1G68430.1 unknown protein)

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-16
Identity = 67/161 (41.61%), Postives = 82/161 (50.93%), Query Frame = 1 

Query: 1   MASLLKFKLLSTHCGVA-QSPTLSP--RTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCAL 60
           MA+L +FK L T CGVA QSPT SP  RTSPL+ LRR+KTTL+MLL    S  SP R   
Sbjct: 1   MATLQRFKFLGTQCGVAAQSPTRSPSPRTSPLVQLRRKKTTLKMLL----SLASPSRREQ 60

Query: 61  PEKNIDDRKDLSRGNKLKDLFVSSPPYDGTD-------GRINETAIAAPIRNVTPVCKKK 120
                   KD++ G KLKDLFVSS   +          G+  E  +AA    +    + +
Sbjct: 61  QPLIHHHHKDVA-GRKLKDLFVSSSSAEEEQEEDERPKGKTKEEVLAAMAAKLNAASRLQ 120

Query: 121 ANDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE 152
                    C+     P W GF  K LLQ+ WRP L  I E
Sbjct: 121 ---------CESADAAPVWFGFS-KRLLQRAWRPKLGTIHE 146

[Close]
BLAST of CmaCh15G009250 vs. TAIR10
Match: AT1G66890.1 (AT1G66890.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-15
Identity = 69/166 (41.57%), Postives = 83/166 (50.00%), Query Frame = 1 

Query: 3   SLLKFKLLSTHCG-VAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPE-- 62
           SL KFKLL+THC  VA+SPT     SP++HLRRRKT LR+LLTR     S  R  LPE  
Sbjct: 2   SLQKFKLLATHCSTVAESPT----RSPVIHLRRRKT-LRLLLTR-----SSDRWRLPEIQ 61

Query: 63  ------KNIDDRKDLSRGNKLKDLFVSSPPYD---GTDGRINETAIAAPIRNVTPVCKKK 122
                 K  D R  +    KL DLFVSSPP++   G  G    T +   +    PV    
Sbjct: 62  NNVDESKKTDKRGKIRSSRKLGDLFVSSPPFEESGGGGGGDKGTKMEVEMERDVPVNGVS 121

Query: 123 ANDHIGSAGCK-----PGSPRPGWTGFRYKYLLQKTWRPVLAGIPE 152
            N   G           GS RP  +      LL+++WRPVL  IPE
Sbjct: 122 NNAGFGEEITARRVGFNGSVRPMSSVTLRCRLLRRSWRPVLVTIPE 157

[Close]
BLAST of CmaCh15G009250 vs. NCBI nr
Match: gi|778704144|ref|XP_011655483.1| (PREDICTED: uncharacterized protein LOC105435544 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 1.2e-60
Identity = 122/153 (79.74%), Postives = 131/153 (85.62%), Query Frame = 1 

Query: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPE- 60
           MASLLKFKLL THCGVAQSPTLSPRTSPL+HLRRRKTTLRMLLTRN  RRSPRR +LPE 
Sbjct: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRSLPEN 60

Query: 61  KNIDDRKDLSRGNKLKDLFVSSPPYDGTDGRINETAIAAPIRNVTPVC-KKKANDHIGSA 120
           KN DDRK LSR N LKDLFVSSPPY GTD  +++TA+ AP RNVTPVC K+K   H+GS 
Sbjct: 61  KNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVGSP 120

Query: 121 GCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE 152
           G  PGSPRPGWTGFRYKYLL+KTWRPVL GIPE
Sbjct: 121 GWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 153

[Close]
BLAST of CmaCh15G009250 vs. NCBI nr
Match: gi|659072968|ref|XP_008467191.1| (PREDICTED: uncharacterized protein LOC103504599 [Cucumis melo])

HSP 1 Score: 224.2 bits (570), Expect = 1.6e-55
Identity = 119/155 (76.77%), Postives = 127/155 (81.94%), Query Frame = 1 

Query: 1   MASLLKFKLLSTH-CGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRR-CALP 60
           MASLLKFKLL TH CGVAQSPTLSPRTSPL+HLRRRKTTLRMLLTRN  RRSPRR  ALP
Sbjct: 1   MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP 60

Query: 61  E-KNIDDRKDLSRGNKLKDLFVSSPPYDGTDGRINETAIAAPIRNVTPVC-KKKANDHIG 120
           E K  DD K LSR N LKDLFVSSPPY GTD  ++ETA+ AP +N TPVC K+K    +G
Sbjct: 61  ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG 120

Query: 121 SAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE 152
           S G  PGSPRPGWTGFRYKYLL+KTWRPVL GIPE
Sbjct: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 155

[Close]
BLAST of CmaCh15G009250 vs. NCBI nr
Match: gi|1009120118|ref|XP_015876748.1| (PREDICTED: uncharacterized protein LOC107413337 [Ziziphus jujuba])

HSP 1 Score: 142.1 bits (357), Expect = 7.8e-31
Identity = 90/170 (52.94%), Postives = 102/170 (60.00%), Query Frame = 1 

Query: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRC----- 60
           MA+L KFKLL+T CGV QSPT SPRTSPL+ LRRRKTTLRMLLTR+  RRSPRR      
Sbjct: 1   MAALQKFKLLATQCGVTQSPTRSPRTSPLVQLRRRKTTLRMLLTRSTGRRSPRRRESLAY 60

Query: 61  -----ALPEKNIDDRKDLSR------GNKLKDLFVSSPPYDGTDGR---INETAIAAPIR 120
                 LPEK  ++R+  S          LKDLFVSSPP++G  GR     E       R
Sbjct: 61  QLRPEPLPEKR-NERESQSEKVLAPPRPSLKDLFVSSPPFEGERGRDDNFKERGFGGENR 120

Query: 121 NVTPVCKKKANDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE 152
            +  VCK       G     PGSPRP WTG RYK LL++ WRPVL  IPE
Sbjct: 121 ELGLVCKGIYGSSTGWQ-YGPGSPRPVWTGLRYKSLLRRAWRPVLVTIPE 168

[Close]
BLAST of CmaCh15G009250 vs. NCBI nr
Match: gi|658062359|ref|XP_008367074.1| (PREDICTED: uncharacterized protein LOC103430701 [Malus domestica])

HSP 1 Score: 139.0 bits (349), Expect = 6.6e-30
Identity = 82/151 (54.30%), Postives = 99/151 (65.56%), Query Frame = 1 

Query: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEK 60
           M +L KFKLL+T CGVAQSPT SPRTSPL+  RRRK TL MLLTR+ SRR      +P  
Sbjct: 1   MGTLQKFKLLATQCGVAQSPTRSPRTSPLIQFRRRKPTLLMLLTRSSSRRRDPPVPMP-- 60

Query: 61  NIDDRKDLSRGNKLKDLFVSSPPYDGTDGRINETAIAAPIRNVTPVCKKKANDHIGSAGC 120
            + ++  L R N LKDLFVSSPP++  DGR  E+     + + + +   K    IG  G 
Sbjct: 61  -LPEKIPLQR-NSLKDLFVSSPPFELNDGRKAESERDKRVESGSLLVVGK---EIGGVG- 120

Query: 121 KPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE 152
            PGSPRP WTGFRYK LL++ WRPVL  IPE
Sbjct: 121 -PGSPRPAWTGFRYKSLLRRAWRPVLVTIPE 142

[Close]
BLAST of CmaCh15G009250 vs. NCBI nr
Match: gi|764582150|ref|XP_011464090.1| (PREDICTED: uncharacterized protein LOC105351467 [Fragaria vesca subsp. vesca])

HSP 1 Score: 137.1 bits (344), Expect = 2.5e-29
Identity = 81/151 (53.64%), Postives = 94/151 (62.25%), Query Frame = 1 

Query: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEK 60
           MA+L KFKLL+ HCG AQSPT SPRTSPL+ LRRRK +L MLL+R+ SRRS +R   P  
Sbjct: 13  MATLQKFKLLALHCGAAQSPTRSPRTSPLIQLRRRKPSLLMLLSRSGSRRSSQRRESPAP 72

Query: 61  NIDDRKDLSRGNKLKDLFVSSPPYDGTDGRINETAIAAPIRNVTPVCKKKANDHIGSAGC 120
                    R N LKDLFVSSPP++G      E     P   +  V +       G  G 
Sbjct: 73  V---ESPPERRNSLKDLFVSSPPFEGF-----EKMEKRPEFGLVVVAR-------GGGGV 132

Query: 121 KPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE 152
            PGSPRPGWTGFRYK LL++ WRPVL  IPE
Sbjct: 133 GPGSPRPGWTGFRYKSLLRRAWRPVLVTIPE 148

The following BLAST results are available for this feature:
BLAST of CmaCh15G009250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh15G009250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPK6_CUCSA8.6e-6179.74Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576820 PE=4 SV=1[more]
M5XPV3_PRUPE6.2e-2752.94Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022537mg PE=4 SV=1[more]
A0A067K324_JATCU1.1e-2648.50Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18374 PE=4 SV=1[more]
V4UBZ9_9ROSI1.8e-2648.50Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016989mg PE=4 SV=1[more]
A0A067GBD7_CITSI2.4e-2647.27Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042178mg PE=4 SV=1[more]
BLAST of CmaCh15G009250 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G68430.11.5e-1641.61 unknown protein[more]
AT1G66890.11.3e-1541.57 FUNCTIONS IN: molecular_function unknown[more]
BLAST of CmaCh15G009250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778704144|ref|XP_011655483.1|1.2e-6079.74PREDICTED: uncharacterized protein LOC105435544 [Cucumis sativus][more]
gi|659072968|ref|XP_008467191.1|1.6e-5576.77PREDICTED: uncharacterized protein LOC103504599 [Cucumis melo][more]
gi|1009120118|ref|XP_015876748.1|7.8e-3152.94PREDICTED: uncharacterized protein LOC107413337 [Ziziphus jujuba][more]
gi|658062359|ref|XP_008367074.1|6.6e-3054.30PREDICTED: uncharacterized protein LOC103430701 [Malus domestica][more]
gi|764582150|ref|XP_011464090.1|2.5e-2953.64PREDICTED: uncharacterized protein LOC105351467 [Fragaria vesca subsp. vesca][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G009250.1CmaCh15G009250.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34542FAMILY NOT NAMEDcoord: 2..151
score: 1.3
NoneNo IPR availablePANTHERPTHR34542:SF150S RIBOSOMAL PROTEIN RELATED PROTEINcoord: 2..151
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh15G009250Cucsa.280750Cucumber (Gy14) v1cgycmaB0775
CmaCh15G009250Cla003888Watermelon (97103) v1cmawmB273
CmaCh15G009250Csa5G576820Cucumber (Chinese Long) v2cmacuB301
CmaCh15G009250MELO3C005343Melon (DHL92) v3.5.1cmameB258
CmaCh15G009250ClCG01G005860Watermelon (Charleston Gray)cmawcgB257
CmaCh15G009250CSPI05G20030Wild cucumber (PI 183967)cmacpiB306
CmaCh15G009250CmoCh15G009640Cucurbita moschata (Rifu)cmacmoB287
CmaCh15G009250CmoCh04G021710Cucurbita moschata (Rifu)cmacmoB301
CmaCh15G009250Lsi09G006200Bottle gourd (USVL1VR-Ls)cmalsiB263
CmaCh15G009250Cp4.1LG13g06940Cucurbita pepo (Zucchini)cmacpeB305
CmaCh15G009250Cp4.1LG01g18180Cucurbita pepo (Zucchini)cmacpeB321
CmaCh15G009250MELO3C005343.2Melon (DHL92) v3.6.1cmamedB293
CmaCh15G009250CsaV3_5G028830Cucumber (Chinese Long) v3cmacucB0355
CmaCh15G009250Cla97C01G006130Watermelon (97103) v2cmawmbB286
CmaCh15G009250Bhi12G000730Wax gourdcmawgoB0366
CmaCh15G009250Carg24927Silver-seed gourdcarcmaB1101
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh15G009250CmaCh04G020760Cucurbita maxima (Rimu)cmacmaB315
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh15G009250Watermelon (97103) v2cmawmbB308
CmaCh15G009250Wax gourdcmawgoB0407
CmaCh15G009250Cucurbita maxima (Rimu)cmacmaB305
CmaCh15G009250Cucurbita maxima (Rimu)cmacmaB329
CmaCh15G009250Cucumber (Gy14) v1cgycmaB0796
CmaCh15G009250Watermelon (Charleston Gray)cmawcgB265
CmaCh15G009250Cucurbita moschata (Rifu)cmacmoB293
CmaCh15G009250Cucurbita moschata (Rifu)cmacmoB312
CmaCh15G009250Wild cucumber (PI 183967)cmacpiB301
CmaCh15G009250Cucumber (Chinese Long) v2cmacuB295
CmaCh15G009250Melon (DHL92) v3.5.1cmameB264
CmaCh15G009250Watermelon (97103) v1cmawmB270
CmaCh15G009250Cucurbita pepo (Zucchini)cmacpeB300
CmaCh15G009250Cucurbita pepo (Zucchini)cmacpeB310
CmaCh15G009250Cucurbita pepo (Zucchini)cmacpeB323
CmaCh15G009250Bottle gourd (USVL1VR-Ls)cmalsiB283
CmaCh15G009250Cucumber (Gy14) v2cgybcmaB606
CmaCh15G009250Cucumber (Gy14) v2cgybcmaB611
CmaCh15G009250Melon (DHL92) v3.6.1cmamedB301
CmaCh15G009250Silver-seed gourdcarcmaB1161
CmaCh15G009250Silver-seed gourdcarcmaB1455
CmaCh15G009250Cucumber (Chinese Long) v3cmacucB0346