CmaCh04G020760 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G020760
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description50S ribosomal protein-related, putative
LocationCma_Chr04 : 14133090 .. 14133530 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCGCTTCTCAAATTCAAGCTCCTCCCGACCCACTGCGGCGTCGCTCAGAGTCCCACCTTGAGCCCTAGGACCAGCCCTCTCGTTCACCTCCGCCGCCGCAAAACCACCCTCCGGATGCTCCTCACTCGGAATTCCGCCCGCCGCCGCGCCTTGCCGGATAAGAAACGAGACGACCACAAGGATTTATCACGGAGCAACACGTTGAAGGATTTGTTCGTGTCGTCACCGCCGTATGATGAATCCGACGGCGAGATTAACGAGACCGTTGCGGCGGCTCCGATCCGGAACGTGACTCCGGTTTGTAGGGAGGAGGATGGTGAGATTGGACCGACCGGTTGGCATCCAGGTTCGCCTAGACCGGGTTGGACCGGTTTCCGATACAAATACTTGCTCCGGAAAACCTGGCGGCCACTGCTCGCCGGAATCCCCGAGTAA

mRNA sequence

ATGGCGTCGCTTCTCAAATTCAAGCTCCTCCCGACCCACTGCGGCGTCGCTCAGAGTCCCACCTTGAGCCCTAGGACCAGCCCTCTCGTTCACCTCCGCCGCCGCAAAACCACCCTCCGGATGCTCCTCACTCGGAATTCCGCCCGCCGCCGCGCCTTGCCGGATAAGAAACGAGACGACCACAAGGATTTATCACGGAGCAACACGTTGAAGGATTTGTTCGTGTCGTCACCGCCGTATGATGAATCCGACGGCGAGATTAACGAGACCGTTGCGGCGGCTCCGATCCGGAACGTGACTCCGGTTTGTAGGGAGGAGGATGGTGAGATTGGACCGACCGGTTGGCATCCAGGTTCGCCTAGACCGGGTTGGACCGGTTTCCGATACAAATACTTGCTCCGGAAAACCTGGCGGCCACTGCTCGCCGGAATCCCCGAGTAA

Coding sequence (CDS)

ATGGCGTCGCTTCTCAAATTCAAGCTCCTCCCGACCCACTGCGGCGTCGCTCAGAGTCCCACCTTGAGCCCTAGGACCAGCCCTCTCGTTCACCTCCGCCGCCGCAAAACCACCCTCCGGATGCTCCTCACTCGGAATTCCGCCCGCCGCCGCGCCTTGCCGGATAAGAAACGAGACGACCACAAGGATTTATCACGGAGCAACACGTTGAAGGATTTGTTCGTGTCGTCACCGCCGTATGATGAATCCGACGGCGAGATTAACGAGACCGTTGCGGCGGCTCCGATCCGGAACGTGACTCCGGTTTGTAGGGAGGAGGATGGTGAGATTGGACCGACCGGTTGGCATCCAGGTTCGCCTAGACCGGGTTGGACCGGTTTCCGATACAAATACTTGCTCCGGAAAACCTGGCGGCCACTGCTCGCCGGAATCCCCGAGTAA

Protein sequence

MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
Homology
[Close]
BLAST of CmaCh04G020760 vs. TrEMBL
Match: A0A0A0KPK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576820 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-58
Identity = 118/153 (77.12%), Postives = 130/153 (84.97%), Query Frame = 1 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA----RRRALPD- 60
           MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS     RRR+LP+ 
Sbjct: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRSLPEN 60

Query: 61  KKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTPVC--REEDGEIGPT 120
           K RDD K LSRSNTLKDLFVSSPPY  +D ++++T   AP RNVTPVC   +E+G +G  
Sbjct: 61  KNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVGSP 120

Query: 121 GWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE 147
           GW+PGSPRPGWTGFRYKYLLRKTWRP+L GIPE
Sbjct: 121 GWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 153

[Close]
BLAST of CmaCh04G020760 vs. TrEMBL
Match: M5XPV3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022537mg PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.3e-28
Identity = 79/148 (53.38%), Postives = 96/148 (64.86%), Query Frame = 1 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRRALPDKKRDD 60
           M +L KFKLL T CGVAQSPT SPRTSPL+ LRRRK TL MLLTR+S+RRR  P +    
Sbjct: 1   MGTLQKFKLLATQCGVAQSPTRSPRTSPLIQLRRRKPTLLMLLTRSSSRRRDTPVQSLPQ 60

Query: 61  HKDLS-RSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTPVCREEDGEIGPTGWHPGS 120
                 + ++LKDLFVSSPP++ ++   +E         V  V  +  G +G     PGS
Sbjct: 61  KAPAPVQRHSLKDLFVSSPPFELNEKRKSEIDTRQEFGLV--VAGKAVGGVG-----PGS 120

Query: 121 PRPGWTGFRYK-YLLRKTWRPLLAGIPE 147
           PRPGWTGFRYK  LLR+ WRP+L  IPE
Sbjct: 121 PRPGWTGFRYKSLLLRRAWRPVLVTIPE 141

[Close]
BLAST of CmaCh04G020760 vs. TrEMBL
Match: A0A067K324_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18374 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.3e-28
Identity = 83/166 (50.00%), Postives = 98/166 (59.04%), Query Frame = 1 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLR-RRKTTLRMLLTRNSARRR-------- 60
           MA+L KFKLL T CGVA+SPT SPRTSP+VHLR R+KTTLRMLLTR+S   R        
Sbjct: 1   MATLQKFKLLATQCGVAESPTRSPRTSPIVHLRSRKKTTLRMLLTRSSGSGRRSPRRHEP 60

Query: 61  -----------ALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVT 120
                       LP+KKRD         TLKDLFVSSP ++E   E N+      I    
Sbjct: 61  SPIPHQQRLLPPLPEKKRD---------TLKDLFVSSPSFEEE--EENKDKVREMIGGKC 120

Query: 121 PVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE 147
            V R     +G      GSPRPGW GFR++YL+R+ WRP+L GIPE
Sbjct: 121 EVFRMRVNGLGAE--LAGSPRPGWIGFRHRYLIRRAWRPMLVGIPE 153

[Close]
BLAST of CmaCh04G020760 vs. TrEMBL
Match: A0A061ECQ7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_009543 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.3e-28
Identity = 80/161 (49.69%), Postives = 97/161 (60.25%), Query Frame = 1 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRRA-------- 60
           MA+L KFKL  T CGV QSPT SPRTSPLV+ RR KTTLRMLLTR S+R+ +        
Sbjct: 1   MATLQKFKLFATQCGVTQSPTRSPRTSPLVNFRRPKTTLRMLLTRTSSRKSSTCREMSYP 60

Query: 61  ------LPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTP-VCRE 120
                 LP+KK+ D KDLS   TLKDLFVSSP  +E + +    V        +  V   
Sbjct: 61  PSFVGNLPEKKKGD-KDLS-GRTLKDLFVSSPTLEEEEDDDEGNVVKEKYGGKSEVVLAS 120

Query: 121 EDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE 147
           +   +   G  PGSPR GW GFR++ LLR+ WRP+L  IPE
Sbjct: 121 KLSGLNALGGEPGSPRAGWIGFRHRMLLRRGWRPMLVTIPE 159

[Close]
BLAST of CmaCh04G020760 vs. TrEMBL
Match: A0A067GBD7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042178mg PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.9e-26
Identity = 81/165 (49.09%), Postives = 99/165 (60.00%), Query Frame = 1 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARR---------- 60
           MA+L KFK+L T CGVAQSPT SPRTSPLV   R+KTTLRMLLTR+S+ R          
Sbjct: 1   MATLQKFKILATQCGVAQSPTRSPRTSPLVQFPRKKTTLRMLLTRSSSSRCKEITLPTPK 60

Query: 61  -RALPDKKRDDHKDL---SRSNTLKDLFVSSPPYDESDGEINETV--AAAPIRNVTPVCR 120
             A+ D+K+ D +DL      N LKDLFVSS   +E   + N+     +  IR+ T V R
Sbjct: 61  EIAVDDQKQRDSRDLLVVQSRNKLKDLFVSSFDEEEQQQQQNKVSDNDSGKIRDKTEVLR 120

Query: 121 ---EEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE 147
              +  G     G  PG  RP W GFR++YLLRK WRP+L  IPE
Sbjct: 121 AMKKLHGSGAGVGDEPGLSRPVWVGFRHRYLLRKAWRPMLLTIPE 165

[Close]
BLAST of CmaCh04G020760 vs. TAIR10
Match: AT1G68430.1 (AT1G68430.1 unknown protein)

HSP 1 Score: 84.7 bits (208), Expect = 5.1e-17
Identity = 67/156 (42.95%), Postives = 80/156 (51.28%), Query Frame = 1 

Query: 1   MASLLKFKLLPTHCGVA-QSPTLSP--RTSPLVHLRRRKTTLRMLLTRNSARRRALPDKK 60
           MA+L +FK L T CGVA QSPT SP  RTSPLV LRR+KTTL+MLL+  S  RR      
Sbjct: 1   MATLQRFKFLGTQCGVAAQSPTRSPSPRTSPLVQLRRKKTTLKMLLSLASPSRREQQPLI 60

Query: 61  RDDHKDLSRSNTLKDLFVSSPPYDESD-------GEINETVAAAPIRNVTPVCREEDGEI 120
              HKD++    LKDLFVSS   +E         G+  E V AA    +    R +    
Sbjct: 61  HHHHKDVA-GRKLKDLFVSSSSAEEEQEEDERPKGKTKEEVLAAMAAKLNAASRLQ---- 120

Query: 121 GPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE 147
                      P W GF  K LL++ WRP L  I E
Sbjct: 121 ----CESADAAPVWFGFS-KRLLQRAWRPKLGTIHE 146

[Close]
BLAST of CmaCh04G020760 vs. TAIR10
Match: AT1G66890.1 (AT1G66890.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 81.3 bits (199), Expect = 5.6e-16
Identity = 69/163 (42.33%), Postives = 86/163 (52.76%), Query Frame = 1 

Query: 3   SLLKFKLLPTHCG-VAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRRALPD------ 62
           SL KFKLL THC  VA+SPT     SP++HLRRRK TLR+LLTR+S R R LP+      
Sbjct: 2   SLQKFKLLATHCSTVAESPT----RSPVIHLRRRK-TLRLLLTRSSDRWR-LPEIQNNVD 61

Query: 63  --KKRDDHKDLSRSNTLKDLFVSSPPYDESDG----------EINETVAAAPIRNVTPVC 122
             KK D    +  S  L DLFVSSPP++ES G          E+ E     P+  V+   
Sbjct: 62  ESKKTDKRGKIRSSRKLGDLFVSSPPFEESGGGGGGDKGTKMEV-EMERDVPVNGVSNNA 121

Query: 123 REEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE 147
              +          GS RP  +      LLR++WRP+L  IPE
Sbjct: 122 GFGEEITARRVGFNGSVRPMSSVTLRCRLLRRSWRPVLVTIPE 157

[Close]
BLAST of CmaCh04G020760 vs. NCBI nr
Match: gi|778704144|ref|XP_011655483.1| (PREDICTED: uncharacterized protein LOC105435544 [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 1.9e-58
Identity = 118/153 (77.12%), Postives = 130/153 (84.97%), Query Frame = 1 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA----RRRALPD- 60
           MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS     RRR+LP+ 
Sbjct: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRSLPEN 60

Query: 61  KKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTPVC--REEDGEIGPT 120
           K RDD K LSRSNTLKDLFVSSPPY  +D ++++T   AP RNVTPVC   +E+G +G  
Sbjct: 61  KNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVGSP 120

Query: 121 GWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE 147
           GW+PGSPRPGWTGFRYKYLLRKTWRP+L GIPE
Sbjct: 121 GWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 153

[Close]
BLAST of CmaCh04G020760 vs. NCBI nr
Match: gi|659072968|ref|XP_008467191.1| (PREDICTED: uncharacterized protein LOC103504599 [Cucumis melo])

HSP 1 Score: 233.4 bits (594), Expect = 2.5e-58
Identity = 120/155 (77.42%), Postives = 131/155 (84.52%), Query Frame = 1 

Query: 1   MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARR-----RALP 60
           MASLLKFKLLPTH CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS RR     RALP
Sbjct: 1   MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP 60

Query: 61  D-KKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTPVCREE--DGEIG 120
           + KKRDDHK LSRSNTLKDLFVSSPPY  +D +++ET   AP +N TPVC +E  +G +G
Sbjct: 61  ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG 120

Query: 121 PTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE 147
             GW+PGSPRPGWTGFRYKYLLRKTWRP+L GIPE
Sbjct: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 155

[Close]
BLAST of CmaCh04G020760 vs. NCBI nr
Match: gi|658062359|ref|XP_008367074.1| (PREDICTED: uncharacterized protein LOC103430701 [Malus domestica])

HSP 1 Score: 141.0 bits (354), Expect = 1.7e-30
Identity = 81/146 (55.48%), Postives = 98/146 (67.12%), Query Frame = 1 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRRALPDKKRDD 60
           M +L KFKLL T CGVAQSPT SPRTSPL+  RRRK TL MLLTR+S+RRR  P      
Sbjct: 1   MGTLQKFKLLATQCGVAQSPTRSPRTSPLIQFRRRKPTLLMLLTRSSSRRRDPPVPMPLP 60

Query: 61  HKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTPVCREEDGEIGPTGWHPGSP 120
            K   + N+LKDLFVSSPP++ +DG   E+     + + + +   +  EIG  G  PGSP
Sbjct: 61  EKIPLQRNSLKDLFVSSPPFELNDGRKAESERDKRVESGSLLVVGK--EIGGVG--PGSP 120

Query: 121 RPGWTGFRYKYLLRKTWRPLLAGIPE 147
           RP WTGFRYK LLR+ WRP+L  IPE
Sbjct: 121 RPAWTGFRYKSLLRRAWRPVLVTIPE 142

[Close]
BLAST of CmaCh04G020760 vs. NCBI nr
Match: gi|694331107|ref|XP_009356236.1| (PREDICTED: uncharacterized protein LOC103947105 [Pyrus x bretschneideri])

HSP 1 Score: 137.5 bits (345), Expect = 1.9e-29
Identity = 78/146 (53.42%), Postives = 95/146 (65.07%), Query Frame = 1 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRRALPDKKRDD 60
           M +L KFKLL T CGVAQSPT SPRTSPL+  RRRK TL MLLTR+S+RR   P      
Sbjct: 14  MGTLQKFKLLATQCGVAQSPTRSPRTSPLIQFRRRKPTLLMLLTRSSSRRSDPPVPMPLP 73

Query: 61  HKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTPVCREEDGEIGPTGWHPGSP 120
               ++ N+LKDLFVSSPP++ +DG   E+         + +  +E G +G     PGSP
Sbjct: 74  ENIPAQRNSLKDLFVSSPPFELNDGGKAESERDKRAELGSLLIGKEIGGVG-----PGSP 133

Query: 121 RPGWTGFRYKYLLRKTWRPLLAGIPE 147
           RP WTGFRYK LLR+ WRP+L  IPE
Sbjct: 134 RPAWTGFRYKSLLRRAWRPVLVTIPE 154

[Close]
BLAST of CmaCh04G020760 vs. NCBI nr
Match: gi|658010108|ref|XP_008340283.1| (PREDICTED: uncharacterized protein LOC103403232 [Malus domestica])

HSP 1 Score: 135.6 bits (340), Expect = 7.1e-29
Identity = 79/151 (52.32%), Postives = 96/151 (63.58%), Query Frame = 1 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRRALPDKKRDD 60
           M +L KFKLL T CGVAQSPT SPR+SPL+ L RRK TL MLLTR+S+RRR  P      
Sbjct: 14  MGTLQKFKLLATQCGVAQSPTRSPRSSPLIQLPRRKPTLLMLLTRSSSRRRDPPVPMPLP 73

Query: 61  HKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTPVCREEDGEIGPT-----GW 120
            +   + N+LKDLFVSSPP++ +DG   E+             R E G +G       G+
Sbjct: 74  EELPVQRNSLKDLFVSSPPFELNDGRKAESERDK---------RAEFGSLGAVGKEIGGF 133

Query: 121 HPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE 147
            PGSPRP WTGFRYK L+R+ WRP+L  IPE
Sbjct: 134 GPGSPRPAWTGFRYKSLMRRAWRPVLVTIPE 155

The following BLAST results are available for this feature:
BLAST of CmaCh04G020760 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G020760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPK6_CUCSA1.3e-5877.12Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576820 PE=4 SV=1[more]
M5XPV3_PRUPE9.3e-2853.38Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022537mg PE=4 SV=1[more]
A0A067K324_JATCU9.3e-2850.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18374 PE=4 SV=1[more]
A0A061ECQ7_THECC9.3e-2849.69Uncharacterized protein OS=Theobroma cacao GN=TCM_009543 PE=4 SV=1[more]
A0A067GBD7_CITSI3.9e-2649.09Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042178mg PE=4 SV=1[more]
BLAST of CmaCh04G020760 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G68430.15.1e-1742.95 unknown protein[more]
AT1G66890.15.6e-1642.33 FUNCTIONS IN: molecular_function unknown[more]
BLAST of CmaCh04G020760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778704144|ref|XP_011655483.1|1.9e-5877.12PREDICTED: uncharacterized protein LOC105435544 [Cucumis sativus][more]
gi|659072968|ref|XP_008467191.1|2.5e-5877.42PREDICTED: uncharacterized protein LOC103504599 [Cucumis melo][more]
gi|658062359|ref|XP_008367074.1|1.7e-3055.48PREDICTED: uncharacterized protein LOC103430701 [Malus domestica][more]
gi|694331107|ref|XP_009356236.1|1.9e-2953.42PREDICTED: uncharacterized protein LOC103947105 [Pyrus x bretschneideri][more]
gi|658010108|ref|XP_008340283.1|7.1e-2952.32PREDICTED: uncharacterized protein LOC103403232 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G020760.1CmaCh04G020760.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34542FAMILY NOT NAMEDcoord: 2..146
score: 5.3
NoneNo IPR availablePANTHERPTHR34542:SF150S RIBOSOMAL PROTEIN RELATED PROTEINcoord: 2..146
score: 5.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G020760Cucsa.280750Cucumber (Gy14) v1cgycmaB0782
CmaCh04G020760Cla003888Watermelon (97103) v1cmawmB710
CmaCh04G020760Csa5G576820Cucumber (Chinese Long) v2cmacuB752
CmaCh04G020760MELO3C005343Melon (DHL92) v3.5.1cmameB637
CmaCh04G020760ClCG01G005860Watermelon (Charleston Gray)cmawcgB634
CmaCh04G020760CSPI05G20030Wild cucumber (PI 183967)cmacpiB760
CmaCh04G020760CmoCh15G009640Cucurbita moschata (Rifu)cmacmoB685
CmaCh04G020760CmoCh04G021710Cucurbita moschata (Rifu)cmacmoB729
CmaCh04G020760Lsi09G006200Bottle gourd (USVL1VR-Ls)cmalsiB622
CmaCh04G020760Cp4.1LG13g06940Cucurbita pepo (Zucchini)cmacpeB710
CmaCh04G020760Cp4.1LG01g18180Cucurbita pepo (Zucchini)cmacpeB735
CmaCh04G020760MELO3C005343.2Melon (DHL92) v3.6.1cmamedB723
CmaCh04G020760CsaV3_5G028830Cucumber (Chinese Long) v3cmacucB0888
CmaCh04G020760Cla97C01G006130Watermelon (97103) v2cmawmbB705
CmaCh04G020760Bhi12G000730Wax gourdcmawgoB0828
CmaCh04G020760Carg26600Silver-seed gourdcarcmaB0380
CmaCh04G020760Carg24927Silver-seed gourdcarcmaB1103
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh04G020760CmaCh15G009250Cucurbita maxima (Rimu)cmacmaB315
CmaCh04G020760CmaCh15G000520Cucurbita maxima (Rimu)cmacmaB323
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G020760Cucurbita maxima (Rimu)cmacmaB408
CmaCh04G020760Cucurbita maxima (Rimu)cmacmaB537
CmaCh04G020760Cucumber (Gy14) v1cgycmaB0807
CmaCh04G020760Cucurbita moschata (Rifu)cmacmoB714
CmaCh04G020760Cucurbita moschata (Rifu)cmacmoB743
CmaCh04G020760Wild cucumber (PI 183967)cmacpiB742
CmaCh04G020760Cucumber (Chinese Long) v2cmacuB735
CmaCh04G020760Melon (DHL92) v3.5.1cmameB661
CmaCh04G020760Watermelon (Charleston Gray)cmawcgB665
CmaCh04G020760Watermelon (97103) v1cmawmB709
CmaCh04G020760Cucurbita pepo (Zucchini)cmacpeB698
CmaCh04G020760Cucurbita pepo (Zucchini)cmacpeB721
CmaCh04G020760Cucurbita pepo (Zucchini)cmacpeB737
CmaCh04G020760Bottle gourd (USVL1VR-Ls)cmalsiB683
CmaCh04G020760Cucumber (Gy14) v2cgybcmaB657
CmaCh04G020760Cucumber (Gy14) v2cgybcmaB677
CmaCh04G020760Melon (DHL92) v3.6.1cmamedB747
CmaCh04G020760Silver-seed gourdcarcmaB1169
CmaCh04G020760Silver-seed gourdcarcmaB1458
CmaCh04G020760Cucumber (Chinese Long) v3cmacucB0874
CmaCh04G020760Watermelon (97103) v2cmawmbB768
CmaCh04G020760Wax gourdcmawgoB0908