CmoCh04G021710 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G021710
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description50S ribosomal protein-related, putative
LocationCmo_Chr04 : 15815507 .. 15815959 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCGCTTCTCAAATTCAAGCTCCTCCCGACCCACTGCGGCGTCGCTCAGAGTCCCACCTTGAGCCCTAGGACCAGCCCTCTCGTTCACCTCCGCCGCCGCAAAACCACCCTCCGGATGCTCCTCACTCGGAATTCCGCCCGCCGCTCGCCCCGTCGCCGCGCCTTGCCGGATAAGAAACGAGACGACCACAAGGATTTGTCTCGGAGCAACACGTTGAAGGATTTGTTCGTGTCATCACCGCCGTATGATGAATCCGACGGCGAGATTAACGAGACCGTTGCGGCAGCTCCGATCCGGAACGTGACTCCGGTTTGTAGGGAGGAGGATGGTGAGATTGGACCGACCAGTTGGCATCCAGGTTCGCCTAGACCGGGTTGGACCGGTTTCCGACACAAATACTTGCTCCGGAAAACGTGGCGGCCACTGCTTGCCAGCATCCCCGAGTAA

mRNA sequence

ATGGCGTCGCTTCTCAAATTCAAGCTCCTCCCGACCCACTGCGGCGTCGCTCAGAGTCCCACCTTGAGCCCTAGGACCAGCCCTCTCGTTCACCTCCGCCGCCGCAAAACCACCCTCCGGATGCTCCTCACTCGGAATTCCGCCCGCCGCTCGCCCCGTCGCCGCGCCTTGCCGGATAAGAAACGAGACGACCACAAGGATTTGTCTCGGAGCAACACGTTGAAGGATTTGTTCGTGTCATCACCGCCGTATGATGAATCCGACGGCGAGATTAACGAGACCGTTGCGGCAGCTCCGATCCGGAACGTGACTCCGGTTTGTAGGGAGGAGGATGGTGAGATTGGACCGACCAGTTGGCATCCAGGTTCGCCTAGACCGGGTTGGACCGGTTTCCGACACAAATACTTGCTCCGGAAAACGTGGCGGCCACTGCTTGCCAGCATCCCCGAGTAA

Coding sequence (CDS)

ATGGCGTCGCTTCTCAAATTCAAGCTCCTCCCGACCCACTGCGGCGTCGCTCAGAGTCCCACCTTGAGCCCTAGGACCAGCCCTCTCGTTCACCTCCGCCGCCGCAAAACCACCCTCCGGATGCTCCTCACTCGGAATTCCGCCCGCCGCTCGCCCCGTCGCCGCGCCTTGCCGGATAAGAAACGAGACGACCACAAGGATTTGTCTCGGAGCAACACGTTGAAGGATTTGTTCGTGTCATCACCGCCGTATGATGAATCCGACGGCGAGATTAACGAGACCGTTGCGGCAGCTCCGATCCGGAACGTGACTCCGGTTTGTAGGGAGGAGGATGGTGAGATTGGACCGACCAGTTGGCATCCAGGTTCGCCTAGACCGGGTTGGACCGGTTTCCGACACAAATACTTGCTCCGGAAAACGTGGCGGCCACTGCTTGCCAGCATCCCCGAGTAA
Homology
[Close]
BLAST of CmoCh04G021710 vs. TrEMBL
Match: A0A0A0KPK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576820 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 4.3e-60
Identity = 119/153 (77.78%), Postives = 132/153 (86.27%), Query Frame = 1 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPD- 60
           MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRRR+LP+ 
Sbjct: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRSLPEN 60

Query: 61  KKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTPVC--REEDGEIGPT 120
           K RDD K LSRSNTLKDLFVSSPPY  +D ++++T   AP RNVTPVC   +E+G +G  
Sbjct: 61  KNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVGSP 120

Query: 121 SWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE 151
            W+PGSPRPGWTGFR+KYLLRKTWRP+L  IPE
Sbjct: 121 GWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 153

[Close]
BLAST of CmoCh04G021710 vs. TrEMBL
Match: A0A067K324_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18374 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.0e-29
Identity = 88/166 (53.01%), Postives = 102/166 (61.45%), Query Frame = 1 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLR-RRKTTLRMLLTRN--SARRSPRRR-- 60
           MA+L KFKLL T CGVA+SPT SPRTSP+VHLR R+KTTLRMLLTR+  S RRSPRR   
Sbjct: 1   MATLQKFKLLATQCGVAESPTRSPRTSPIVHLRSRKKTTLRMLLTRSSGSGRRSPRRHEP 60

Query: 61  -----------ALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVT 120
                       LP+KKRD         TLKDLFVSSP ++E   E N+      I    
Sbjct: 61  SPIPHQQRLLPPLPEKKRD---------TLKDLFVSSPSFEEE--EENKDKVREMIGGKC 120

Query: 121 PVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE 151
            V R     +G      GSPRPGW GFRH+YL+R+ WRP+L  IPE
Sbjct: 121 EVFRMRVNGLGAEL--AGSPRPGWIGFRHRYLIRRAWRPMLVGIPE 153

[Close]
BLAST of CmoCh04G021710 vs. TrEMBL
Match: B9SLZ4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1310520 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.3e-28
Identity = 85/164 (51.83%), Postives = 98/164 (59.76%), Query Frame = 1 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTR----NSARRSPRRR- 60
           MA+L KFKLL T CGV QSPT SPRTSPLVHLRR+KTTLRMLLTR    +SARRSP R+ 
Sbjct: 1   MATLQKFKLLATQCGVVQSPTRSPRTSPLVHLRRKKTTLRMLLTRSISNSSARRSPPRKD 60

Query: 61  ---------ALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTPV 120
                      P+KKRD         TLKDLFVSSP   + + E  E      I     V
Sbjct: 61  SLPRVLPPLPPPEKKRD---------TLKDLFVSSPITFDDEDEEEENKKGKMIGGKCEV 120

Query: 121 CREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE 151
            R     +G      GSPRPGW GFRH+ L+R+ WRP+L +I E
Sbjct: 121 FRMRVNGLGVEP--AGSPRPGWIGFRHRALIRRAWRPMLVAIVE 153

[Close]
BLAST of CmoCh04G021710 vs. TrEMBL
Match: A0A061ECQ7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_009543 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.3e-28
Identity = 82/161 (50.93%), Postives = 98/161 (60.87%), Query Frame = 1 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRA---- 60
           MA+L KFKL  T CGV QSPT SPRTSPLV+ RR KTTLRMLLTR S+R+S   R     
Sbjct: 1   MATLQKFKLFATQCGVTQSPTRSPRTSPLVNFRRPKTTLRMLLTRTSSRKSSTCREMSYP 60

Query: 61  ------LPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTP-VCRE 120
                 LP+KK+ D KDLS   TLKDLFVSSP  +E + +    V        +  V   
Sbjct: 61  PSFVGNLPEKKKGD-KDLS-GRTLKDLFVSSPTLEEEEDDDEGNVVKEKYGGKSEVVLAS 120

Query: 121 EDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE 151
           +   +      PGSPR GW GFRH+ LLR+ WRP+L +IPE
Sbjct: 121 KLSGLNALGGEPGSPRAGWIGFRHRMLLRRGWRPMLVTIPE 159

[Close]
BLAST of CmoCh04G021710 vs. TrEMBL
Match: A0A067GBD7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042178mg PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.1e-27
Identity = 82/165 (49.70%), Postives = 102/165 (61.82%), Query Frame = 1 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARR-------SPR 60
           MA+L KFK+L T CGVAQSPT SPRTSPLV   R+KTTLRMLLTR+S+ R       +P+
Sbjct: 1   MATLQKFKILATQCGVAQSPTRSPRTSPLVQFPRKKTTLRMLLTRSSSSRCKEITLPTPK 60

Query: 61  RRALPDKKRDDHKDL---SRSNTLKDLFVSSPPYDESDGEINETV--AAAPIRNVTPVCR 120
             A+ D+K+ D +DL      N LKDLFVSS   +E   + N+     +  IR+ T V R
Sbjct: 61  EIAVDDQKQRDSRDLLVVQSRNKLKDLFVSSFDEEEQQQQQNKVSDNDSGKIRDKTEVLR 120

Query: 121 ---EEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE 151
              +  G        PG  RP W GFRH+YLLRK WRP+L +IPE
Sbjct: 121 AMKKLHGSGAGVGDEPGLSRPVWVGFRHRYLLRKAWRPMLLTIPE 165

[Close]
BLAST of CmoCh04G021710 vs. TAIR10
Match: AT1G68430.1 (AT1G68430.1 unknown protein)

HSP 1 Score: 82.0 bits (201), Expect = 3.4e-16
Identity = 68/160 (42.50%), Postives = 81/160 (50.62%), Query Frame = 1 

Query: 1   MASLLKFKLLPTHCGVA-QSPTLSP--RTSPLVHLRRRKTTLRMLLTRNSARRSPRRRAL 60
           MA+L +FK L T CGVA QSPT SP  RTSPLV LRR+KTTL+MLL    +  SP RR  
Sbjct: 1   MATLQRFKFLGTQCGVAAQSPTRSPSPRTSPLVQLRRKKTTLKMLL----SLASPSRREQ 60

Query: 61  PDKKRDDHKDLSRSNTLKDLFVSSPPYDESD-------GEINETVAAAPIRNVTPVCREE 120
                  HKD++    LKDLFVSS   +E         G+  E V AA    +    R  
Sbjct: 61  QPLIHHHHKDVA-GRKLKDLFVSSSSAEEEQEEDERPKGKTKEEVLAAMAAKLNAASR-- 120

Query: 121 DGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE 151
                          P W GF  K LL++ WRP L +I E
Sbjct: 121 ------LQCESADAAPVWFGF-SKRLLQRAWRPKLGTIHE 146

[Close]
BLAST of CmoCh04G021710 vs. TAIR10
Match: AT1G66890.1 (AT1G66890.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 80.5 bits (197), Expect = 9.8e-16
Identity = 69/162 (42.59%), Postives = 87/162 (53.70%), Query Frame = 1 

Query: 3   SLLKFKLLPTHCG-VAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSAR-RSPRRRALPD- 62
           SL KFKLL THC  VA+SPT     SP++HLRRRK TLR+LLTR+S R R P  +   D 
Sbjct: 2   SLQKFKLLATHCSTVAESPT----RSPVIHLRRRK-TLRLLLTRSSDRWRLPEIQNNVDE 61

Query: 63  -KKRDDHKDLSRSNTLKDLFVSSPPYDESDG----------EINETVAAAPIRNVTPVCR 122
            KK D    +  S  L DLFVSSPP++ES G          E+ E     P+  V+    
Sbjct: 62  SKKTDKRGKIRSSRKLGDLFVSSPPFEESGGGGGGDKGTKMEV-EMERDVPVNGVSNNAG 121

Query: 123 EEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE 151
             +          GS RP  +      LLR++WRP+L +IPE
Sbjct: 122 FGEEITARRVGFNGSVRPMSSVTLRCRLLRRSWRPVLVTIPE 157

[Close]
BLAST of CmoCh04G021710 vs. NCBI nr
Match: gi|778704144|ref|XP_011655483.1| (PREDICTED: uncharacterized protein LOC105435544 [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 6.1e-60
Identity = 119/153 (77.78%), Postives = 132/153 (86.27%), Query Frame = 1 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPD- 60
           MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRRR+LP+ 
Sbjct: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRSLPEN 60

Query: 61  KKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTPVC--REEDGEIGPT 120
           K RDD K LSRSNTLKDLFVSSPPY  +D ++++T   AP RNVTPVC   +E+G +G  
Sbjct: 61  KNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVGSP 120

Query: 121 SWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE 151
            W+PGSPRPGWTGFR+KYLLRKTWRP+L  IPE
Sbjct: 121 GWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 153

[Close]
BLAST of CmoCh04G021710 vs. NCBI nr
Match: gi|659072968|ref|XP_008467191.1| (PREDICTED: uncharacterized protein LOC103504599 [Cucumis melo])

HSP 1 Score: 234.2 bits (596), Expect = 1.5e-58
Identity = 121/155 (78.06%), Postives = 133/155 (85.81%), Query Frame = 1 

Query: 1   MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRR-RALP 60
           MASLLKFKLLPTH CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRR RALP
Sbjct: 1   MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP 60

Query: 61  D-KKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTPVC--REEDGEIG 120
           + KKRDDHK LSRSNTLKDLFVSSPPY  +D +++ET   AP +N TPVC   +E+G +G
Sbjct: 61  ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG 120

Query: 121 PTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE 151
              W+PGSPRPGWTGFR+KYLLRKTWRP+L  IPE
Sbjct: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 155

[Close]
BLAST of CmoCh04G021710 vs. NCBI nr
Match: gi|1009120118|ref|XP_015876748.1| (PREDICTED: uncharacterized protein LOC107413337 [Ziziphus jujuba])

HSP 1 Score: 142.1 bits (357), Expect = 7.8e-31
Identity = 85/168 (50.60%), Postives = 102/168 (60.71%), Query Frame = 1 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRR----- 60
           MA+L KFKLL T CGV QSPT SPRTSPLV LRRRKTTLRMLLTR++ RRSPRRR     
Sbjct: 1   MAALQKFKLLATQCGVTQSPTRSPRTSPLVQLRRRKTTLRMLLTRSTGRRSPRRRESLAY 60

Query: 61  -----ALPDKKRDDHKDLSR-----SNTLKDLFVSSPPYDES---DGEINETVAAAPIRN 120
                 LP+K+ +      +       +LKDLFVSSPP++     D    E       R 
Sbjct: 61  QLRPEPLPEKRNERESQSEKVLAPPRPSLKDLFVSSPPFEGERGRDDNFKERGFGGENRE 120

Query: 121 VTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE 151
           +  VC+   G      + PGSPRP WTG R+K LLR+ WRP+L +IPE
Sbjct: 121 LGLVCKGIYGSSTGWQYGPGSPRPVWTGLRYKSLLRRAWRPVLVTIPE 168

[Close]
BLAST of CmoCh04G021710 vs. NCBI nr
Match: gi|802681697|ref|XP_012082145.1| (PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas])

HSP 1 Score: 137.9 bits (346), Expect = 1.5e-29
Identity = 88/166 (53.01%), Postives = 102/166 (61.45%), Query Frame = 1 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLR-RRKTTLRMLLTRN--SARRSPRRR-- 60
           MA+L KFKLL T CGVA+SPT SPRTSP+VHLR R+KTTLRMLLTR+  S RRSPRR   
Sbjct: 1   MATLQKFKLLATQCGVAESPTRSPRTSPIVHLRSRKKTTLRMLLTRSSGSGRRSPRRHEP 60

Query: 61  -----------ALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVT 120
                       LP+KKRD         TLKDLFVSSP ++E   E N+      I    
Sbjct: 61  SPIPHQQRLLPPLPEKKRD---------TLKDLFVSSPSFEEE--EENKDKVREMIGGKC 120

Query: 121 PVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE 151
            V R     +G      GSPRPGW GFRH+YL+R+ WRP+L  IPE
Sbjct: 121 EVFRMRVNGLGAEL--AGSPRPGWIGFRHRYLIRRAWRPMLVGIPE 153

[Close]
BLAST of CmoCh04G021710 vs. NCBI nr
Match: gi|658062359|ref|XP_008367074.1| (PREDICTED: uncharacterized protein LOC103430701 [Malus domestica])

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 83/153 (54.25%), Postives = 102/153 (66.67%), Query Frame = 1 

Query: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARR--SPRRRALP 60
           M +L KFKLL T CGVAQSPT SPRTSPL+  RRRK TL MLLTR+S+RR   P    LP
Sbjct: 1   MGTLQKFKLLATQCGVAQSPTRSPRTSPLIQFRRRKPTLLMLLTRSSSRRRDPPVPMPLP 60

Query: 61  DKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVT-PVCREEDGEIGPT 120
           +K       L R N+LKDLFVSSPP++ +DG   E+     + + +  V  +E G +G  
Sbjct: 61  EK-----IPLQR-NSLKDLFVSSPPFELNDGRKAESERDKRVESGSLLVVGKEIGGVG-- 120

Query: 121 SWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE 151
              PGSPRP WTGFR+K LLR+ WRP+L +IPE
Sbjct: 121 ---PGSPRPAWTGFRYKSLLRRAWRPVLVTIPE 142

The following BLAST results are available for this feature:
BLAST of CmoCh04G021710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G021710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPK6_CUCSA4.3e-6077.78Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576820 PE=4 SV=1[more]
A0A067K324_JATCU1.0e-2953.01Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18374 PE=4 SV=1[more]
B9SLZ4_RICCO3.3e-2851.83Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1310520 PE=4 SV=1[more]
A0A061ECQ7_THECC3.3e-2850.93Uncharacterized protein OS=Theobroma cacao GN=TCM_009543 PE=4 SV=1[more]
A0A067GBD7_CITSI2.1e-2749.70Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042178mg PE=4 SV=1[more]
BLAST of CmoCh04G021710 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G68430.13.4e-1642.50 unknown protein[more]
AT1G66890.19.8e-1642.59 FUNCTIONS IN: molecular_function unknown[more]
BLAST of CmoCh04G021710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778704144|ref|XP_011655483.1|6.1e-6077.78PREDICTED: uncharacterized protein LOC105435544 [Cucumis sativus][more]
gi|659072968|ref|XP_008467191.1|1.5e-5878.06PREDICTED: uncharacterized protein LOC103504599 [Cucumis melo][more]
gi|1009120118|ref|XP_015876748.1|7.8e-3150.60PREDICTED: uncharacterized protein LOC107413337 [Ziziphus jujuba][more]
gi|802681697|ref|XP_012082145.1|1.5e-2953.01PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas][more]
gi|658062359|ref|XP_008367074.1|1.2e-2854.25PREDICTED: uncharacterized protein LOC103430701 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G021710.1CmoCh04G021710.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34542FAMILY NOT NAMEDcoord: 2..150
score: 2.5
NoneNo IPR availablePANTHERPTHR34542:SF150S RIBOSOMAL PROTEIN RELATED PROTEINcoord: 2..150
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G021710Cucsa.280750Cucumber (Gy14) v1cgycmoB0777
CmoCh04G021710CmaCh04G020760Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G021710CmaCh15G009250Cucurbita maxima (Rimu)cmacmoB301
CmoCh04G021710Cla003888Watermelon (97103) v1cmowmB706
CmoCh04G021710Csa5G576820Cucumber (Chinese Long) v2cmocuB742
CmoCh04G021710MELO3C005343Melon (DHL92) v3.5.1cmomeB627
CmoCh04G021710ClCG01G005860Watermelon (Charleston Gray)cmowcgB636
CmoCh04G021710CSPI05G20030Wild cucumber (PI 183967)cmocpiB750
CmoCh04G021710Lsi09G006200Bottle gourd (USVL1VR-Ls)cmolsiB610
CmoCh04G021710Cp4.1LG13g06940Cucurbita pepo (Zucchini)cmocpeB663
CmoCh04G021710Cp4.1LG01g18180Cucurbita pepo (Zucchini)cmocpeB688
CmoCh04G021710MELO3C005343.2Melon (DHL92) v3.6.1cmomedB716
CmoCh04G021710CsaV3_5G028830Cucumber (Chinese Long) v3cmocucB0878
CmoCh04G021710Cla97C01G006130Watermelon (97103) v2cmowmbB676
CmoCh04G021710Bhi12G000730Wax gourdcmowgoB0824
CmoCh04G021710Carg26600Silver-seed gourdcarcmoB0378
CmoCh04G021710Carg24927Silver-seed gourdcarcmoB1072
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G021710CmoCh15G009640Cucurbita moschata (Rifu)cmocmoB254
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G021710Silver-seed gourdcarcmoB1137
CmoCh04G021710Silver-seed gourdcarcmoB1413
CmoCh04G021710Cucumber (Chinese Long) v3cmocucB0858
CmoCh04G021710Watermelon (97103) v2cmowmbB740
CmoCh04G021710Wax gourdcmowgoB0909
CmoCh04G021710Cucurbita moschata (Rifu)cmocmoB344
CmoCh04G021710Cucurbita moschata (Rifu)cmocmoB469
CmoCh04G021710Cucumber (Gy14) v1cgycmoB0800
CmoCh04G021710Cucurbita maxima (Rimu)cmacmoB426
CmoCh04G021710Cucurbita maxima (Rimu)cmacmoB742
CmoCh04G021710Wild cucumber (PI 183967)cmocpiB733
CmoCh04G021710Cucumber (Chinese Long) v2cmocuB724
CmoCh04G021710Melon (DHL92) v3.5.1cmomeB654
CmoCh04G021710Watermelon (Charleston Gray)cmowcgB666
CmoCh04G021710Watermelon (97103) v1cmowmB705
CmoCh04G021710Cucurbita pepo (Zucchini)cmocpeB650
CmoCh04G021710Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G021710Cucurbita pepo (Zucchini)cmocpeB691
CmoCh04G021710Bottle gourd (USVL1VR-Ls)cmolsiB677
CmoCh04G021710Cucumber (Gy14) v2cgybcmoB637
CmoCh04G021710Cucumber (Gy14) v2cgybcmoB655
CmoCh04G021710Melon (DHL92) v3.6.1cmomedB744