Carg24927 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24927
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal protein-like protein
Location	Cucurbita_argyrosperma_scaffold_227 : 347991 .. 348446 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGCTTCTCAAATTCAAGCTCCTTTCGACGCACTGCGGCGTCGCTCAAAGTCCCACTTTAAGCCCTAGAACCAGTCCTCTCCTTCACCTACGCCGCCGTAAAACCACTCTGCGGATGCTTCTCACTCGGAATTTCAGCCGCCGGTCCCCTCGCCGCTGCGCCTTGCCGGAGAAGAACGTAGACGACCGTAAGGATTTGACTCGAGGCAACAAGTTGAAGGACTTGTTCGTTTCGTCGCCGCCGTATGATGGAACCGACGCCAGGATTAACGAGACGGCGATCGCGGCTCCTATCCGGAACGTAACTCCGGTTTGTAAGAAGAAAGCCGACGATCATATTGGATCGGCCGGTTTCAAACCCGGTTCACCTAGACCGGTCTGGACCGGCTTCCGGTACAAATACTTACTTCAGAAAACTTGGCGGCCGGTTCTCGCCGGAATCCCCGAGTAA

mRNA sequence

ATGGCGTCGCTTCTCAAATTCAAGCTCCTTTCGACGCACTGCGGCGTCGCTCAAAGTCCCACTTTAAGCCCTAGAACCAGTCCTCTCCTTCACCTACGCCGCCGTAAAACCACTCTGCGGATGCTTCTCACTCGGAATTTCAGCCGCCGGTCCCCTCGCCGCTGCGCCTTGCCGGAGAAGAACGTAGACGACCGTAAGGATTTGACTCGAGGCAACAAGTTGAAGGACTTGTTCGTTTCGTCGCCGCCGTATGATGGAACCGACGCCAGGATTAACGAGACGGCGATCGCGGCTCCTATCCGGAACGTAACTCCGGTTTGTAAGAAGAAAGCCGACGATCATATTGGATCGGCCGGTTTCAAACCCGGTTCACCTAGACCGGTCTGGACCGGCTTCCGGTACAAATACTTACTTCAGAAAACTTGGCGGCCGGTTCTCGCCGGAATCCCCGAGTAA

Coding sequence (CDS)

ATGGCGTCGCTTCTCAAATTCAAGCTCCTTTCGACGCACTGCGGCGTCGCTCAAAGTCCCACTTTAAGCCCTAGAACCAGTCCTCTCCTTCACCTACGCCGCCGTAAAACCACTCTGCGGATGCTTCTCACTCGGAATTTCAGCCGCCGGTCCCCTCGCCGCTGCGCCTTGCCGGAGAAGAACGTAGACGACCGTAAGGATTTGACTCGAGGCAACAAGTTGAAGGACTTGTTCGTTTCGTCGCCGCCGTATGATGGAACCGACGCCAGGATTAACGAGACGGCGATCGCGGCTCCTATCCGGAACGTAACTCCGGTTTGTAAGAAGAAAGCCGACGATCATATTGGATCGGCCGGTTTCAAACCCGGTTCACCTAGACCGGTCTGGACCGGCTTCCGGTACAAATACTTACTTCAGAAAACTTGGCGGCCGGTTCTCGCCGGAATCCCCGAGTAA

Protein sequence

MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPIRNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE

Homology

[Close]

BLAST of Carg24927 vs. NCBI nr
Match: XP_022939363.1 (uncharacterized protein LOC111445302 [Cucurbita moschata])

HSP 1 Score: 303.1 bits (775), Expect = 5.2e-79
Identity = 148/151 (98.01%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEK 60
           MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEK
Sbjct: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEK 60

Query: 61  NVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPIRNVTPVCKKKADDHIGSAGF 120
           N+DDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPIRNVTPVCKKKADDHIGSAG 
Sbjct: 61  NIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPIRNVTPVCKKKADDHIGSAGC 120

Query: 121 KPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE 152
           KPGSPRP WTGFRYKYLLQKTWRPVLAGIPE
Sbjct: 121 KPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE 151

[Close]

BLAST of Carg24927 vs. NCBI nr
Match: XP_023550276.1 (uncharacterized protein LOC111808499 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 299.7 bits (766), Expect = 5.7e-78
Identity = 146/151 (96.69%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEK 60
           MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEK
Sbjct: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEK 60

Query: 61  NVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPIRNVTPVCKKKADDHIGSAGF 120
           N+DDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAP RNVTPVCKKKADDHIGS G 
Sbjct: 61  NIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPFRNVTPVCKKKADDHIGSPGC 120

Query: 121 KPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE 152
           KPGSPRP WTGFRYKYLLQKTWRPVLAGIPE
Sbjct: 121 KPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE 151

[Close]

BLAST of Carg24927 vs. NCBI nr
Match: XP_022994049.1 (uncharacterized protein LOC111489857 [Cucurbita maxima])

HSP 1 Score: 298.1 bits (762), Expect = 1.7e-77
Identity = 145/151 (96.03%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEK 60
           MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEK
Sbjct: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEK 60

Query: 61  NVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPIRNVTPVCKKKADDHIGSAGF 120
           N+DDRKDL+RGNKLKDLFVSSPPYDGTD RINETAIAAPIRNVTPVCKKKA+DHIGSAG 
Sbjct: 61  NIDDRKDLSRGNKLKDLFVSSPPYDGTDGRINETAIAAPIRNVTPVCKKKANDHIGSAGC 120

Query: 121 KPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE 152
           KPGSPRP WTGFRYKYLLQKTWRPVLAGIPE
Sbjct: 121 KPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE 151

[Close]

BLAST of Carg24927 vs. NCBI nr
Match: XP_023513243.1 (uncharacterized protein LOC111777755 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.7 bits (613), Expect = 3.1e-60
Identity = 119/151 (78.81%), Postives = 131/151 (86.75%), Query Frame = 0


Query: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEK 60
           MASLLKFKLL THCGVAQSPTLSPRTSPL+HLRRRKTTLRMLLTRN +RRSPRR ALP+K
Sbjct: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDK 60

Query: 61  NVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPIRNVTPVCKKKADDHIGSAGF 120
             DD KDL+R N LKDLFVSSPPYD ++  INET  AAPIRNVTPVC+++ D  IG  G+
Sbjct: 61  KRDDHKDLSRSNTLKDLFVSSPPYDESECEINETVAAAPIRNVTPVCREE-DGEIGPTGW 120

Query: 121 KPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE 152
            PGSPRP WTGFRYKYLL+KTWRP+LAGIPE
Sbjct: 121 HPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE 150

[Close]

BLAST of Carg24927 vs. NCBI nr
Match: XP_011655483.1 (PREDICTED: uncharacterized protein LOC105435544 [Cucumis sativus] >KGN51540.1 hypothetical protein Csa_5G576820 [Cucumis sativus])

HSP 1 Score: 240.0 bits (611), Expect = 5.4e-60
Identity = 120/153 (78.43%), Postives = 132/153 (86.27%), Query Frame = 0


Query: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPE- 60
           MASLLKFKLL THCGVAQSPTLSPRTSPL+HLRRRKTTLRMLLTRN  RRSPRR +LPE 
Sbjct: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRSLPEN 60

Query: 61  KNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPIRNVTPVC-KKKADDHIGSA 120
           KN DDRK L+R N LKDLFVSSPPY GTD  +++TA+ AP RNVTPVC K+K + H+GS 
Sbjct: 61  KNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVGSP 120

Query: 121 GFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE 152
           G+ PGSPRP WTGFRYKYLL+KTWRPVL GIPE
Sbjct: 121 GWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 153

[Close]

BLAST of Carg24927 vs. TAIR10
Match: AT1G66890.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-14
Identity = 68/168 (40.48%), Postives = 83/168 (49.40%), Query Frame = 0


Query: 3   SLLKFKLLSTHCG-VAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPE-- 62
           SL KFKLL+THC  VA+SPT     SP++HLRRRK TLR+LLT     RS  R  LPE  
Sbjct: 2   SLQKFKLLATHCSTVAESPT----RSPVIHLRRRK-TLRLLLT-----RSSDRWRLPEIQ 61

Query: 63  ------KNVDDRKDLTRGNKLKDLFVSSP----------PYDGTDARINETAIAAPIRNV 122
                 K  D R  +    KL DLFVSSP             GT   + E     P+  V
Sbjct: 62  NNVDESKKTDKRGKIRSSRKLGDLFVSSPXXXXXXXXXXXXKGTKMEV-EMERDVPVNGV 121

Query: 123 TPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE 152
           +       +      GF  GS RP+ +      LL+++WRPVL  IPE
Sbjct: 122 SNNAGFGEEITARRVGFN-GSVRPMSSVTLRCRLLRRSWRPVLVTIPE 157

[Close]

BLAST of Carg24927 vs. TAIR10
Match: AT5G16200.1 (50S ribosomal protein-related)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-10
Identity = 62/166 (37.35%), Postives = 82/166 (49.40%), Query Frame = 0


Query: 1   MASLLKFKLLSTH----CGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNF-SRRSPRRC 60
           ++ L KFKL + H       A SPT+SP  SP+ +LRRRK TLRML  ++  SRR   R 
Sbjct: 3   LSRLHKFKLFAAHRSLEASTAGSPTMSPTKSPVFNLRRRK-TLRMLFDKSSDSRRRNLRQ 62

Query: 61  ALPEKNVDDRK--DLTRGN------KLKDLFVS--SPPYDGTDARINETAIAAPIRNVTP 120
            L E    D    +  RGN      KL++L V+  SPPY G   R +   I      ++P
Sbjct: 63  ILEESPESDGNSGNKKRGNHRATRRKLRELLVTSPSPPYKG---REDIDGIGEERSEISP 122

Query: 121 VCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE 152
           +      D       + GS   V   FR + +L+K WRPVL  IPE
Sbjct: 123 LNVTSNGDGRELTARRFGSSGSV-QSFRLR-ILRKPWRPVLVSIPE 162

[Close]

BLAST of Carg24927 vs. TrEMBL
Match: tr|A0A0A0KPK6|A0A0A0KPK6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576820 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 3.5e-60
Identity = 120/153 (78.43%), Postives = 132/153 (86.27%), Query Frame = 0


Query: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPE- 60
           MASLLKFKLL THCGVAQSPTLSPRTSPL+HLRRRKTTLRMLLTRN  RRSPRR +LPE 
Sbjct: 1   MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRSLPEN 60

Query: 61  KNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPIRNVTPVC-KKKADDHIGSA 120
           KN DDRK L+R N LKDLFVSSPPY GTD  +++TA+ AP RNVTPVC K+K + H+GS 
Sbjct: 61  KNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVGSP 120

Query: 121 GFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE 152
           G+ PGSPRP WTGFRYKYLL+KTWRPVL GIPE
Sbjct: 121 GWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 153

[Close]

BLAST of Carg24927 vs. TrEMBL
Match: tr|A0A1S3CSY3|A0A1S3CSY3_CUCME (uncharacterized protein LOC103504599 OS=Cucumis melo OX=3656 GN=LOC103504599 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 4.5e-55
Identity = 117/155 (75.48%), Postives = 128/155 (82.58%), Query Frame = 0


Query: 1   MASLLKFKLLSTH-CGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRR-CALP 60
           MASLLKFKLL TH CGVAQSPTLSPRTSPL+HLRRRKTTLRMLLTRN  RRSPRR  ALP
Sbjct: 1   MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP 60

Query: 61  E-KNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPIRNVTPVC-KKKADDHIG 120
           E K  DD K L+R N LKDLFVSSPPY GTD  ++ETA+ AP +N TPVC K+K +  +G
Sbjct: 61  ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG 120

Query: 121 SAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE 152
           S G+ PGSPRP WTGFRYKYLL+KTWRPVL GIPE
Sbjct: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 155

[Close]

BLAST of Carg24927 vs. TrEMBL
Match: tr|V4UBZ9|V4UBZ9_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016989mg PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.2e-27
Identity = 82/167 (49.10%), Postives = 104/167 (62.28%), Query Frame = 0


Query: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRR-------SPR 60
           MA+L KFK+L+T CGVAQSPT SPRTSPL+   R+KTTLRMLLTR+ S R       +P+
Sbjct: 1   MATLQKFKILATQCGVAQSPTRSPRTSPLVQFPRKKTTLRMLLTRSSSSRCKEITLPTPK 60

Query: 61  RCALPEKNVDDRKDL---TRGNKLKDLFVSSPPYD--GTDARINETA--IAAPIRNVTPV 120
             A+ ++   D +DL      NKLKDLFVSS   D  G   R N+ +   +  IR+ T V
Sbjct: 61  EIAVDDQKQRDCRDLLVVQSRNKLKDLFVSSFDEDEEGQQQRQNKVSDNDSGKIRDKTEV 120

Query: 121 CK--KKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE 152
            +  KK        G +PG  RPVW GFR++YLL+K WRP+L  IPE
Sbjct: 121 LRAMKKLHGSGAGVGDEPGLSRPVWVGFRHRYLLRKAWRPMLLTIPE 167

[Close]

BLAST of Carg24927 vs. TrEMBL
Match: tr|A0A2P6R1J5|A0A2P6R1J5_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0434621 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.8e-27
Identity = 76/151 (50.33%), Postives = 98/151 (64.90%), Query Frame = 0


Query: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEK 60
           MA+L KFKLL+ HCG AQSPT SPRTSPL+ L RRK +L MLL+R+ SRRS RR    ++
Sbjct: 12  MATLQKFKLLALHCGAAQSPTRSPRTSPLIQLPRRKPSLLMLLSRSGSRRSTRR---QDQ 71

Query: 61  NVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPIRNVTPVCKKKADDHIGSAGF 120
            V  +    R N LKDLFVSSPP++ ++ +I +              +++    + + G 
Sbjct: 72  PVPVQPPPERRNSLKDLFVSSPPFEESE-KIEK--------------RREFGLVVVAGGV 131

Query: 121 KPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE 152
            PGSPRP WTGFRYK LL++ WRPVL  IPE
Sbjct: 132 GPGSPRPGWTGFRYKSLLRRAWRPVLVTIPE 144

[Close]

BLAST of Carg24927 vs. TrEMBL
Match: tr|A0A2H5P682|A0A2H5P682_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_105580 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.4e-26
Identity = 81/167 (48.50%), Postives = 103/167 (61.68%), Query Frame = 0


Query: 1   MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRR-------SPR 60
           MA+L KFK+L+T CGVAQSPT SPRTSPL+   R+KTTLRMLLTR+ S R       +P+
Sbjct: 1   MATLQKFKILATQCGVAQSPTRSPRTSPLVQFPRKKTTLRMLLTRSSSSRCKEITLPTPK 60

Query: 61  RCALPEKNVDDRKDL---TRGNKLKDLFVSSPPYD--GTDARINETA--IAAPIRNVTPV 120
             A+ ++   D +DL      NKLKDLFVSS   D  G   R N+ +   +  I + T V
Sbjct: 61  EIAVDDQKQRDCRDLLVVQSRNKLKDLFVSSFDEDEEGQQQRQNKVSDNDSGKIGDKTEV 120

Query: 121 CK--KKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE 152
            +  KK        G +PG  RPVW GFR++YLL+K WRP+L  IPE
Sbjct: 121 LRAMKKLHGSGAGVGDEPGLSRPVWVGFRHRYLLRKAWRPMLLTIPE 167

The following BLAST results are available for this feature:

BLAST of Carg24927 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939363.1	5.2e-79	98.01	uncharacterized protein LOC111445302 [Cucurbita moschata]	[more]
XP_023550276.1	5.7e-78	96.69	uncharacterized protein LOC111808499 [Cucurbita pepo subsp. pepo]	[more]
XP_022994049.1	1.7e-77	96.03	uncharacterized protein LOC111489857 [Cucurbita maxima]	[more]
XP_023513243.1	3.1e-60	78.81	uncharacterized protein LOC111777755 [Cucurbita pepo subsp. pepo]	[more]
XP_011655483.1	5.4e-60	78.43	PREDICTED: uncharacterized protein LOC105435544 [Cucumis sativus] >KGN51540.1 hy...	[more]

BLAST of Carg24927 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G66890.1	1.9e-14	40.48	FUNCTIONS IN: molecular_function unknown	[more]
AT5G16200.1	1.6e-10	37.35	50S ribosomal protein-related	[more]

BLAST of Carg24927 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24927 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KPK6\|A0A0A0KPK6_CUCSA	3.5e-60	78.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576820 PE=4 SV=1	[more]
tr\|A0A1S3CSY3\|A0A1S3CSY3_CUCME	4.5e-55	75.48	uncharacterized protein LOC103504599 OS=Cucumis melo OX=3656 GN=LOC103504599 PE=...	[more]
tr\|V4UBZ9\|V4UBZ9_9ROSI	5.2e-27	49.10	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016989mg PE=4 ...	[more]
tr\|A0A2P6R1J5\|A0A2P6R1J5_ROSCH	6.8e-27	50.33	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0434621 PE=4...	[more]
tr\|A0A2H5P682\|A0A2H5P682_CITUN	3.4e-26	48.50	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_105580 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24927-RA	Carg24927-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34542:SF1	50S RIBOSOMAL PROTEIN RELATED PROTEIN	coord: 1..151
None	No IPR available	PANTHER	PTHR34542	FAMILY NOT NAMED	coord: 1..151

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24927	Cla003888	Watermelon (97103) v1	carwmB0793
Carg24927	Csa5G576820	Cucumber (Chinese Long) v2	carcuB0810
Carg24927	MELO3C005343	Melon (DHL92) v3.5.1	carmeB0791
Carg24927	ClCG01G005860	Watermelon (Charleston Gray)	carwcgB0767
Carg24927	CSPI05G20030	Wild cucumber (PI 183967)	carcpiB0829
Carg24927	Cucsa.280750	Cucumber (Gy14) v1	carcgyB0905
Carg24927	CmaCh04G020760	Cucurbita maxima (Rimu)	carcmaB1103
Carg24927	CmaCh15G009250	Cucurbita maxima (Rimu)	carcmaB1101
Carg24927	CmoCh15G009640	Cucurbita moschata (Rifu)	carcmoB1071
Carg24927	CmoCh04G021710	Cucurbita moschata (Rifu)	carcmoB1072
Carg24927	Lsi09G006200	Bottle gourd (USVL1VR-Ls)	carlsiB730
Carg24927	Cp4.1LG01g18180	Cucurbita pepo (Zucchini)	carcpeB1112
Carg24927	Cp4.1LG13g06940	Cucurbita pepo (Zucchini)	carcpeB1111
Carg24927	MELO3C005343.2	Melon (DHL92) v3.6.1	carmedB0803
Carg24927	CsaV3_5G028830	Cucumber (Chinese Long) v3	carcucB0833
Carg24927	Cla97C01G006130	Watermelon (97103) v2	carwmbB0830
Carg24927	Bhi12G000730	Wax gourd	carwgoB0928

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24927	Melon (DHL92) v3.5.1	carmeB0792
Carg24927	Melon (DHL92) v3.6.1	carmedB0804
Carg24927	Watermelon (Charleston Gray)	carwcgB0768
Carg24927	Watermelon (97103) v1	carwmB0792
Carg24927	Watermelon (97103) v2	carwmbB0831
Carg24927	Wax gourd	carwgoB0929
Carg24927	Silver-seed gourd	carcarB617
Carg24927	Silver-seed gourd	carcarB618
Carg24927	Cucumber (Gy14) v2	carcgybB0785
Carg24927	Cucurbita maxima (Rimu)	carcmaB1102
Carg24927	Wild cucumber (PI 183967)	carcpiB0830
Carg24927	Cucumber (Chinese Long) v2	carcuB0811
Carg24927	Cucumber (Chinese Long) v3	carcucB0834