CsaV3_5G021950 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G021950
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	ethylene-responsive transcription factor LEP
Location	chr5 : 16684006 .. 16684731 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAACCAAACACATTAAAACCTTCTTCTTCTCTTACACAAATGAGTCCATCGCCCTCCAAACCCAAAAGAAAGCACCACCCCCGCCCCCCGCAGAATCTACGCCCCACCGTTTCCTCGGAGTCCGTCGACGACCCTGGGGTCGATATGCCGCCGAGATCAGAGATCCTTCCACCAAAGAGCGTCATTGGCTCGGCACCTTCGACACCGCCGAGGACGCCGCCATTGCCTACGACCGTGCTGCCCGCTCCCTCCGCGGCTCCCTCGCTCGCACCAACTTCCTCTACTCCGACTCTCCGCCCCCTCCTCCCCCACTCTACTCTGCCTCCATTCACCACCCCAATCAGCCTCCTCTGTTTTCTTCCTCTGCTTCCACCCACTCCTCCCTCTCTTCTCCACCAATTCCCCCCGCCGGAGACTCCCTTTCCGGAATCATCTCCGGCGATTACGACGCCAGCGCTGAGCTTCCGCCATTTCTCCCGGCGATTTCCTCGGAATCGGTGGATTGTGATTATAATAATTACGGTGTGATGGAATCGCAGAACGTTGGATTTGAATGCTTTGATCAATCATCAATTGGAATCGGGTCGTGTTTGGGATTTGATTCGAGCAGTGATTATATATATAATCCGATGTTGGGTTCGATGCCGACGGTTTCCGACGTCGGCGCCGGTGATTTTGAGTCCCCGGCGGGTAATTTCTATTTGCCTCAGTCTTCAGATTACTGA

mRNA sequence

CAAACCAAACACATTAAAACCTTCTTCTTCTCTTACACAAATGAGTCCATCGCCCTCCAAACCCAAAAGAAAGCACCACCCCCGCCCCCCGCAGAATCTACGCCCCACCGTTTCCTCGGAGTCCGTCGACGACCCTGGGGTCGATATGCCGCCGAGATCAGAGATCCTTCCACCAAAGAGCGTCATTGGCTCGGCACCTTCGACACCGCCGAGGACGCCGCCATTGCCTACGACCGTGCTGCCCGCTCCCTCCGCGGCTCCCTCGCTCGCACCAACTTCCTCTACTCCGACTCTCCGCCCCCTCCTCCCCCACTCTACTCTGCCTCCATTCACCACCCCAATCAGCCTCCTCTGTTTTCTTCCTCTGCTTCCACCCACTCCTCCCTCTCTTCTCCACCAATTCCCCCCGCCGGAGACTCCCTTTCCGGAATCATCTCCGGCGATTACGACGCCAGCGCTGAGCTTCCGCCATTTCTCCCGGCGATTTCCTCGGAATCGGTGGATTGTGATTATAATAATTACGGTGTGATGGAATCGCAGAACGTTGGATTTGAATGCTTTGATCAATCATCAATTGGAATCGGGTCGTGTTTGGGATTTGATTCGAGCAGTGATTATATATATAATCCGATGTTGGGTTCGATGCCGACGGTTTCCGACGTCGGCGCCGGTGATTTTGAGTCCCCGGCGGGTAATTTCTATTTGCCTCAGTCTTCAGATTACTGA

Coding sequence (CDS)

CAAACCAAACACATTAAAACCTTCTTCTTCTCTTACACAAATGAGTCCATCGCCCTCCAAACCCAAAAGAAAGCACCACCCCCGCCCCCCGCAGAATCTACGCCCCACCGTTTCCTCGGAGTCCGTCGACGACCCTGGGGTCGATATGCCGCCGAGATCAGAGATCCTTCCACCAAAGAGCGTCATTGGCTCGGCACCTTCGACACCGCCGAGGACGCCGCCATTGCCTACGACCGTGCTGCCCGCTCCCTCCGCGGCTCCCTCGCTCGCACCAACTTCCTCTACTCCGACTCTCCGCCCCCTCCTCCCCCACTCTACTCTGCCTCCATTCACCACCCCAATCAGCCTCCTCTGTTTTCTTCCTCTGCTTCCACCCACTCCTCCCTCTCTTCTCCACCAATTCCCCCCGCCGGAGACTCCCTTTCCGGAATCATCTCCGGCGATTACGACGCCAGCGCTGAGCTTCCGCCATTTCTCCCGGCGATTTCCTCGGAATCGGTGGATTGTGATTATAATAATTACGGTGTGATGGAATCGCAGAACGTTGGATTTGAATGCTTTGATCAATCATCAATTGGAATCGGGTCGTGTTTGGGATTTGATTCGAGCAGTGATTATATATATAATCCGATGTTGGGTTCGATGCCGACGGTTTCCGACGTCGGCGCCGGTGATTTTGAGTCCCCGGCGGGTAATTTCTATTTGCCTCAGTCTTCAGATTACTGA

Protein sequence

QTKHIKTFFFSYTNESIALQTQKKAPPPPPAESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYSDSPPPPPPLYSASIHHPNQPPLFSSSASTHSSLSSPPIPPAGDSLSGIISGDYDASAELPPFLPAISSESVDCDYNNYGVMESQNVGFECFDQSSIGIGSCLGFDSSSDYIYNPMLGSMPTVSDVGAGDFESPAGNFYLPQSSDY

Homology

[Close]

BLAST of CsaV3_5G021950 vs. NCBI nr
Match: XP_004151396.1 (PREDICTED: ethylene-responsive transcription factor LEP-like [Cucumis sativus])

HSP 1 Score: 335.9 bits (860), Expect = 1.2e-88
Identity = 198/210 (94.29%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 32  ESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLART 91
           ESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLART
Sbjct: 19  ESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLART 78

Query: 92  NFLYSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDSLSGIISGDYDA 151
           NFLYSDXXXXXXXXXXXXXXXXXXXXX    XXXXXXX       AGDSLSGIISGDYDA
Sbjct: 79  NFLYSDXXXXXXXXXXXXXXXXXXXXXFLPLXXXXXXXLLHQFPPAGDSLSGIISGDYDA 138

Query: 152 SAELPPFLPAISSESVDCDYNNYGVMESQNVGFECFDQSSIGIGSCLGFDSSSDYIYNPM 211
           SAELPPF PAISSESVDCDYNNYGVMESQNVGFECFDQSSIGIGSCLGFDSSSDYIYNPM
Sbjct: 139 SAELPPFPPAISSESVDCDYNNYGVMESQNVGFECFDQSSIGIGSCLGFDSSSDYIYNPM 198

Query: 212 LGSMPTVSDVGAGDFESPAGNFYLPQSSDY 242
           LGSMPTVSDVGAGDFESPAGNFYLPQSSDY
Sbjct: 199 LGSMPTVSDVGAGDFESPAGNFYLPQSSDY 228

[Close]

BLAST of CsaV3_5G021950 vs. NCBI nr
Match: XP_008437672.1 (PREDICTED: ethylene-responsive transcription factor LEP [Cucumis melo])

HSP 1 Score: 294.3 bits (752), Expect = 3.8e-76
Identity = 186/211 (88.15%), Postives = 193/211 (91.47%), Query Frame = 0


Query: 32  ESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLART 91
           E TPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE+AAIAYDRAARSLRGSLART
Sbjct: 18  EPTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAIAYDRAARSLRGSLART 77

Query: 92  NFLYSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDSLSGIISGDYD- 151
           NFLYSD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    AGDS SGII GDYD 
Sbjct: 78  NFLYSD-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFPPAGDSPSGIIYGDYDG 137

Query: 152 ASAELPPFLPAISSESVDCDYNNYGVMESQNVGFECFDQSSIGIGSCLGFDSSSDYIYNP 211
           +SAELPPF PAISSES +CDYNNYG MESQNVGFECFDQSSIG+GSCLGFDSS DY+YNP
Sbjct: 138 SSAELPPFPPAISSESENCDYNNYGAMESQNVGFECFDQSSIGMGSCLGFDSSGDYMYNP 197

Query: 212 MLGSMPTVSDVGAGDFESPAGNFYLPQSSDY 242
           MLGSM TVSD G GD +SPA NFYLPQSS+Y
Sbjct: 198 MLGSMATVSDAGTGDLQSPAANFYLPQSSEY 227

[Close]

BLAST of CsaV3_5G021950 vs. NCBI nr
Match: XP_023541749.1 (ethylene-responsive transcription factor LEP-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 217.2 bits (552), Expect = 6.0e-53
Identity = 148/209 (70.81%), Postives = 159/209 (76.08%), Query Frame = 0


Query: 33  STPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTN 92
           +TPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE+AA+AYD AARSLRGSLARTN
Sbjct: 19  TTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAVAYDCAARSLRGSLARTN 78

Query: 93  FLYSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDSLSGIISGDYDAS 152
           FLYSD       XXXXXXXXXXXXXXXXXXXXXXXXXXXXX   + DS   + S D D  
Sbjct: 79  FLYSD-----SLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPPSRDSPPSLFSVDGDGG 138

Query: 153 AELPPFLPAIS---SESVDCDYNNYGVMESQNVGFECFDQSSIGIGSCLGFDSSSDYIYN 212
           AELPPF PAIS               +ME QN GFE FDQS   IGSC GFDSSS+Y++ 
Sbjct: 139 AELPPFPPAISXXXXXXXXXXXXXXXLMELQNSGFEYFDQSPTDIGSCFGFDSSSEYVHG 198

Query: 213 PMLGSMPTVSDVGAGDFESPAGNFYLPQS 239
           P+ GSMP VSD GAG+F SPA NFY PQS
Sbjct: 199 PIFGSMPAVSDAGAGEFLSPAANFYFPQS 222

[Close]

BLAST of CsaV3_5G021950 vs. NCBI nr
Match: XP_022141682.1 (ethylene-responsive transcription factor LEP [Momordica charantia])

HSP 1 Score: 214.9 bits (546), Expect = 3.0e-52
Identity = 151/203 (74.38%), Postives = 166/203 (81.77%), Query Frame = 0


Query: 36  HRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLY 95
           HRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE+AA+AYDRAARSLRGSLARTNFLY
Sbjct: 22  HRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSLRGSLARTNFLY 81

Query: 96  SD----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDSLSGIISGDYDA 155
           SD    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      AGDS +   +G  D 
Sbjct: 82  SDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDQFPAAGDSSASFFAGFDDG 141

Query: 156 SAELPPFLPAISSESVDCDYNNYGVMESQNVGFECFDQSSIGIGSCLGFDSSSDYIYNPM 215
            AELPPF PAISSES + +YNN  +ME+QN+G E  DQSS+GIGS  GFDS  +Y+ +P+
Sbjct: 142 GAELPPFPPAISSESENYNYNNC-LMETQNIGLESLDQSSMGIGSYFGFDSGGEYVQSPI 201

Query: 216 LGSMPTVSDVGAGDFESPAGNFY 235
            G+MP VSD  A DFESPA NFY
Sbjct: 202 FGTMPAVSDALASDFESPA-NFY 222

[Close]

BLAST of CsaV3_5G021950 vs. NCBI nr
Match: XP_022990620.1 (ethylene-responsive transcription factor LEP-like [Cucurbita maxima])

HSP 1 Score: 213.4 bits (542), Expect = 8.6e-52
Identity = 147/206 (71.36%), Postives = 156/206 (75.73%), Query Frame = 0


Query: 36  HRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLY 95
           HRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE+AA+AYD AARSLRGSLARTNFLY
Sbjct: 22  HRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAVAYDCAARSLRGSLARTNFLY 81

Query: 96  SDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDSLSGIISGDYDASAEL 155
           SD       XXXXXXXXXXXXXXXXXXXXXXXXXXXXX   + DS   + S D D  AEL
Sbjct: 82  SD-----SLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPPSRDSPPSLFSVDGDGGAEL 141

Query: 156 PPFLPAIS---SESVDCDYNNYGVMESQNVGFECFDQSSIGIGSCLGFDSSSDYIYNPML 215
           PPF PAIS               +ME QN GFE FDQSS  IGSC GFDSSS+Y++ P+ 
Sbjct: 142 PPFPPAISXXXXXXXXXXXXXXXLMELQNSGFEYFDQSSTEIGSCFGFDSSSEYVHGPIF 201

Query: 216 GSMPTVSDVGAGDFESPAGNFYLPQS 239
            SMP VSD GAGDF SPA NFY PQS
Sbjct: 202 SSMPAVSDAGAGDFPSPAANFYFPQS 222

[Close]

BLAST of CsaV3_5G021950 vs. TAIR10
Match: AT5G13910.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-27
Identity = 104/188 (55.32%), Postives = 126/188 (67.02%), Query Frame = 0


Query: 37  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYS 96
           RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAE+AA+AYDRAARS+RG+ ARTNF+YS
Sbjct: 19  RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRGTRARTNFVYS 78

Query: 97  DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDSLSGIISGDYDASAELP 156
           D  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX           + S ++    D   ++ 
Sbjct: 79  DMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYMMMFNQYSSTDSPMLQPHCD---QVD 138

Query: 157 PFLPAISSESVDCDYNNYGVME----SQNVGFECFDQSSIGIGSCLGFDSSSDYIYNPML 216
            ++   S  S    Y+N    E      ++   C+ Q      +  G D SS+Y+++PM 
Sbjct: 139 SYMFGGSQSSNSYCYSNDSSNELPPLPSDLSNSCYSQPQ---WTWTGDDYSSEYVHSPMF 198

Query: 217 GSMPTVSD 221
             MP VSD
Sbjct: 199 SRMPPVSD 200

[Close]

BLAST of CsaV3_5G021950 vs. TAIR10
Match: AT5G18560.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 114.4 bits (285), Expect = 9.9e-26
Identity = 51/65 (78.46%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 32  ESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLART 91
           ++ P RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTA +AA+AYDRAA S+RG+ ART
Sbjct: 49  QAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMRGTQART 108

Query: 92  NFLYS 97
           NF+Y+
Sbjct: 109 NFVYT 113

[Close]

BLAST of CsaV3_5G021950 vs. TAIR10
Match: AT1G28160.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 111.3 bits (277), Expect = 8.4e-25
Identity = 49/61 (80.33%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 37 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYS 96
          +++GVRRRPWGRYAAEIR+P+TKER+WLGTFDTAE+AA+AYDRAARS+RG  ARTNF+YS
Sbjct: 38 KYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNFVYS 97

Query: 97 D 98
          D
Sbjct: 98 D 98

[Close]

BLAST of CsaV3_5G021950 vs. TAIR10
Match: AT1G12890.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 2.7e-23
Identity = 48/61 (78.69%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 37 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYS 96
          ++LGVRRRPWGRYAAEIR+P TKERHWLGTFDTAE+AA AYD AARS+ GSLA TNF Y+
Sbjct: 20 KYLGVRRRPWGRYAAEIRNPFTKERHWLGTFDTAEEAAFAYDVAARSISGSLATTNFFYT 79

Query: 97 D 98
          +
Sbjct: 80 E 80

[Close]

BLAST of CsaV3_5G021950 vs. TAIR10
Match: AT1G12980.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-21
Identity = 47/63 (74.60%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 33  STPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTN 92
           S+  R+ GVRRRPWGRYAAEIRDP +KER WLGTFDTAE AA AYD AAR+ RG+ ARTN
Sbjct: 52  SSTTRYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTN 111

Query: 93  FLY 96
           F Y
Sbjct: 112 FTY 114

[Close]

BLAST of CsaV3_5G021950 vs. Swiss-Prot
Match: sp|Q9M644|LEP_ARATH (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana OX=3702 GN=LEP PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.5e-26
Identity = 104/188 (55.32%), Postives = 126/188 (67.02%), Query Frame = 0


Query: 37  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYS 96
           RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAE+AA+AYDRAARS+RG+ ARTNF+YS
Sbjct: 19  RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRGTRARTNFVYS 78

Query: 97  DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDSLSGIISGDYDASAELP 156
           D  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX           + S ++    D   ++ 
Sbjct: 79  DMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYMMMFNQYSSTDSPMLQPHCD---QVD 138

Query: 157 PFLPAISSESVDCDYNNYGVME----SQNVGFECFDQSSIGIGSCLGFDSSSDYIYNPML 216
            ++   S  S    Y+N    E      ++   C+ Q      +  G D SS+Y+++PM 
Sbjct: 139 SYMFGGSQSSNSYCYSNDSSNELPPLPSDLSNSCYSQPQ---WTWTGDDYSSEYVHSPMF 198

Query: 217 GSMPTVSD 221
             MP VSD
Sbjct: 199 SRMPPVSD 200

[Close]

BLAST of CsaV3_5G021950 vs. Swiss-Prot
Match: sp|Q6J9Q2|ERF86_ARATH (Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana OX=3702 GN=ERF086 PE=2 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 1.8e-24
Identity = 51/65 (78.46%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 32  ESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLART 91
           ++ P RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTA +AA+AYDRAA S+RG+ ART
Sbjct: 49  QAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMRGTQART 108

Query: 92  NFLYS 97
           NF+Y+
Sbjct: 109 NFVYT 113

[Close]

BLAST of CsaV3_5G021950 vs. Swiss-Prot
Match: sp|Q8H3Q1|FZP_ORYSJ (Ethylene-responsive transcription factor FZP OS=Oryza sativa subsp. japonica OX=39947 GN=FZP PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.0e-24
Identity = 50/62 (80.65%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 35  PHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFL 94
           P RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTA++AA+AYDRAA S++G+ ARTNF+
Sbjct: 55  PGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGAQARTNFV 114

Query: 95  YS 97
           Y+
Sbjct: 115 YT 116

[Close]

BLAST of CsaV3_5G021950 vs. Swiss-Prot
Match: sp|Q9FZ90|ERF87_ARATH (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana OX=3702 GN=ERF087 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-23
Identity = 49/61 (80.33%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 37 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYS 96
          +++GVRRRPWGRYAAEIR+P+TKER+WLGTFDTAE+AA+AYDRAARS+RG  ARTNF+YS
Sbjct: 38 KYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNFVYS 97

Query: 97 D 98
          D
Sbjct: 98 D 98

[Close]

BLAST of CsaV3_5G021950 vs. Swiss-Prot
Match: sp|Q3E703|ERF88_ARATH (Ethylene-responsive transcription factor ERF088 OS=Arabidopsis thaliana OX=3702 GN=ERF088 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.8e-22
Identity = 48/61 (78.69%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 37 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYS 96
          ++LGVRRRPWGRYAAEIR+P TKERHWLGTFDTAE+AA AYD AARS+ GSLA TNF Y+
Sbjct: 20 KYLGVRRRPWGRYAAEIRNPFTKERHWLGTFDTAEEAAFAYDVAARSISGSLATTNFFYT 79

Query: 97 D 98
          +
Sbjct: 80 E 80

[Close]

BLAST of CsaV3_5G021950 vs. TrEMBL
Match: tr|A0A1S3AU89|A0A1S3AU89_CUCME (ethylene-responsive transcription factor LEP OS=Cucumis melo OX=3656 GN=LOC103483013 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.5e-76
Identity = 186/211 (88.15%), Postives = 193/211 (91.47%), Query Frame = 0


Query: 32  ESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLART 91
           E TPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE+AAIAYDRAARSLRGSLART
Sbjct: 18  EPTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAIAYDRAARSLRGSLART 77

Query: 92  NFLYSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDSLSGIISGDYD- 151
           NFLYSD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    AGDS SGII GDYD 
Sbjct: 78  NFLYSD-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFPPAGDSPSGIIYGDYDG 137

Query: 152 ASAELPPFLPAISSESVDCDYNNYGVMESQNVGFECFDQSSIGIGSCLGFDSSSDYIYNP 211
           +SAELPPF PAISSES +CDYNNYG MESQNVGFECFDQSSIG+GSCLGFDSS DY+YNP
Sbjct: 138 SSAELPPFPPAISSESENCDYNNYGAMESQNVGFECFDQSSIGMGSCLGFDSSGDYMYNP 197

Query: 212 MLGSMPTVSDVGAGDFESPAGNFYLPQSSDY 242
           MLGSM TVSD G GD +SPA NFYLPQSS+Y
Sbjct: 198 MLGSMATVSDAGTGDLQSPAANFYLPQSSEY 227

[Close]

BLAST of CsaV3_5G021950 vs. TrEMBL
Match: tr|A0A2P6QZY6|A0A2P6QZY6_ROSCH (Putative transcription factor AP2-EREBP family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0428551 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.0e-28
Identity = 117/234 (50.00%), Postives = 135/234 (57.69%), Query Frame = 0


Query: 37  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYS 96
           RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE+AA+AYDRAARS+RGS ARTNF+YS
Sbjct: 43  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYS 102

Query: 97  D---------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 156
           D                          XXXXXXXXXXXXXXXXXXXXXXXX         
Sbjct: 103 DMPHGSSVTSIISPDESHRDMSAFFTAXXXXXXXXXXXXXXXXXXXXXXXXTQDPFDAYP 162

Query: 157 XAGDSL------SGIISGDYDAS--AELPPFLPAISSESVDCDYNNYGVMESQNVGFECF 216
            +G S       SG   GD   S   ELPP  P++SS         YG  E     F+ F
Sbjct: 163 FSGGSYGSYGPGSGCAVGDGAGSHDNELPPLPPSVSS-------TGYGPGEVMGSDFDGF 222

Query: 217 DQ-------SSIGIGSCLGFDSSSDYIYNPMLGSMPTVSDVGAGDFESPAGNFY 235
            +        S+  GS +GFDS+    ++P+ GSMP VSD G   F+  + + Y
Sbjct: 223 SEPTTTHGFDSLASGSYMGFDSNEFVQHSPLFGSMPPVSDSGIDGFDLGSSSAY 269

[Close]

BLAST of CsaV3_5G021950 vs. TrEMBL
Match: tr|M5XK05|M5XK05_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G212700 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.2e-27
Identity = 91/236 (38.56%), Postives = 112/236 (47.46%), Query Frame = 0


Query: 37  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYS 96
           RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE+AA+AYDRAARS+RGS ARTNF+YS
Sbjct: 43  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYS 102

Query: 97  DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA--------GDSLSGIISGD 156
           D                                       +            SG  SG 
Sbjct: 103 DMPHGSSVTSIISPDESQHDMSAFFATPLQPQPQTTNHQQSFFTQDPFDAYPYSGGSSGG 162

Query: 157 Y----------------------DASAELPPFLPAISSESVDCDYNNYGVMES-QNVGFE 216
           +                       +  ELPP  P +SS      Y   GVM S  ++G+ 
Sbjct: 163 FGXXXXXXXXXXXXXXXXXXXXXXSHTELPPLPPCVSSTC----YGPDGVMGSDMDMGYF 222

Query: 217 CFDQSSIG-------IGSCLGFDSSSDYIYNPMLGSMPTVSDVGAGDFESPAGNFY 235
            F + +          GS +GFDS+    ++P+ GSMP VSD G   F+  + + Y
Sbjct: 223 GFSEPTTNNGLDPMMSGSYMGFDSNEFVQHSPLFGSMPPVSDAGIDGFDLGSSSAY 274

[Close]

BLAST of CsaV3_5G021950 vs. TrEMBL
Match: tr|A0A1U7ZQM3|A0A1U7ZQM3_NELNU (ethylene-responsive transcription factor LEP-like OS=Nelumbo nucifera OX=4432 GN=LOC104592717 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.9e-27
Identity = 88/227 (38.77%), Postives = 109/227 (48.02%), Query Frame = 0


Query: 37  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYS 96
           RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAE+AA+AYDRAARS+RGS ARTNF+YS
Sbjct: 38  RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYS 97

Query: 97  D---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDS- 156
           D                                                      AGDS 
Sbjct: 98  DLPPGSSITSIISPDETQHDLSAALLLPSPQTEPTTQLYFTKDSGTATHFSGEFPAGDSW 157

Query: 157 ---------------LSGIISGDYDASAELPPFLPAISS-----------ESVDCDYNNY 216
                          + G+ S  +  S +LPPF   +SS           ++V  D  NY
Sbjct: 158 VAANVSESISSFAGVVDGLASNQFYDSTDLPPFPSDVSSCNAAASGYDMGQAVWPDTTNY 217

Query: 217 -GVMESQNVGFECFDQSSIGIGSCLGFDSSSDYIYNPMLGSMPTVSD 221
            G  +    GF+       G  SC  FD S++++++P+ G MP VSD
Sbjct: 218 VGYSDQTMAGFDS------GSSSCFSFD-SNEFVHSPLFGQMPPVSD 257

[Close]

BLAST of CsaV3_5G021950 vs. TrEMBL
Match: tr|A0A218X6G3|A0A218X6G3_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr019827 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 105/222 (47.30%), Postives = 128/222 (57.66%), Query Frame = 0


Query: 37  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYS 96
           RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE+AA+AYD AARS+RG  ARTNF+YS
Sbjct: 26  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDLAARSMRGPHARTNFVYS 85

Query: 97  D-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDSLSGIISGDY 156
           D                        XXXXXXXXXXXXXXXXXXXXX  G     +   D 
Sbjct: 86  DSPAGSSVTSILSPDEAPHYHNASNXXXXXXXXXXXXXXXXXXXXXFQGGFAENVWPADK 145

Query: 157 DASA-ELPPFLPAISSESVDC-----------DYNNYGVMESQNVGFECFDQSSIGI--- 216
            +S+ ELPPF   +S  S +             + N G +   +     F  S+ G    
Sbjct: 146 GSSSYELPPFPSDMSEYSGNAGSGWGHNAEQGTWGNTGSLACYHDPSSGFSDSTAGFDSG 205

Query: 217 --GSCLGFDSSSDYIYNPMLGSMPTVSDVGAGDFESPAGNFY 235
             GS  GF+SS +Y+++P+   MP VSD G   F   + +++
Sbjct: 206 SGGSYFGFESSGEYVHSPLFSQMPPVSDSGPDGFNLGSSSYF 247

The following BLAST results are available for this feature:

BLAST of CsaV3_5G021950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151396.1	1.2e-88	94.29	PREDICTED: ethylene-responsive transcription factor LEP-like [Cucumis sativus]	[more]
XP_008437672.1	3.8e-76	88.15	PREDICTED: ethylene-responsive transcription factor LEP [Cucumis melo]	[more]
XP_023541749.1	6.0e-53	70.81	ethylene-responsive transcription factor LEP-like [Cucurbita pepo subsp. pepo]	[more]
XP_022141682.1	3.0e-52	74.38	ethylene-responsive transcription factor LEP [Momordica charantia]	[more]
XP_022990620.1	8.6e-52	71.36	ethylene-responsive transcription factor LEP-like [Cucurbita maxima]	[more]

BLAST of CsaV3_5G021950 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13910.1	1.4e-27	55.32	Integrase-type DNA-binding superfamily protein	[more]
AT5G18560.1	9.9e-26	78.46	Integrase-type DNA-binding superfamily protein	[more]
AT1G28160.1	8.4e-25	80.33	Integrase-type DNA-binding superfamily protein	[more]
AT1G12890.1	2.7e-23	78.69	Integrase-type DNA-binding superfamily protein	[more]
AT1G12980.1	1.1e-21	74.60	Integrase-type DNA-binding superfamily protein	[more]

BLAST of CsaV3_5G021950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M644\|LEP_ARATH	2.5e-26	55.32	Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana OX=3702 GN=...	[more]
sp\|Q6J9Q2\|ERF86_ARATH	1.8e-24	78.46	Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q8H3Q1\|FZP_ORYSJ	4.0e-24	80.65	Ethylene-responsive transcription factor FZP OS=Oryza sativa subsp. japonica OX=...	[more]
sp\|Q9FZ90\|ERF87_ARATH	1.5e-23	80.33	Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q3E703\|ERF88_ARATH	4.8e-22	78.69	Ethylene-responsive transcription factor ERF088 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CsaV3_5G021950 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AU89\|A0A1S3AU89_CUCME	2.5e-76	88.15	ethylene-responsive transcription factor LEP OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
tr\|A0A2P6QZY6\|A0A2P6QZY6_ROSCH	2.0e-28	50.00	Putative transcription factor AP2-EREBP family OS=Rosa chinensis OX=74649 GN=Rch...	[more]
tr\|M5XK05\|M5XK05_PRUPE	2.2e-27	38.56	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G212700 PE=4 SV=1	[more]
tr\|A0A1U7ZQM3\|A0A1U7ZQM3_NELNU	4.9e-27	38.77	ethylene-responsive transcription factor LEP-like OS=Nelumbo nucifera OX=4432 GN...	[more]
tr\|A0A218X6G3\|A0A218X6G3_PUNGR	1.1e-26	47.30	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr019827 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR016177	DNA-bd_dom_sf
IPR036955	AP2/ERF_dom_sf
IPR001471	AP2/ERF_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0010432	bract development
biological_process	GO:0010582	floral meristem determinacy
biological_process	GO:0010451	floral meristem growth
biological_process	GO:0010102	lateral root morphogenesis
biological_process	GO:0010030	positive regulation of seed germination
biological_process	GO:0009739	response to gibberellin
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0044212	transcription regulatory region DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G021950.1	CsaV3_5G021950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 60..76 score: 66.42 coord: 38..49 score: 53.33
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 37..100 e-value: 7.8E-34 score: 128.4
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 40..86 e-value: 3.9E-10 score: 39.7
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 37..94 score: 20.297
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 37..93 e-value: 8.27157E-30 score: 106.587
IPR036955	AP2/ERF domain superfamily	GENE3D	G3DSA:3.30.730.10		coord: 36..95 e-value: 1.7E-27 score: 97.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..141
None	No IPR available	PANTHER	PTHR31677:SF40	SUBFAMILY NOT NAMED	coord: 32..212
None	No IPR available	PANTHER	PTHR31677	FAMILY NOT NAMED	coord: 32..212
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	SSF54171	DNA-binding domain	coord: 38..95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G021950	CSPIUnG00170	Wild cucumber (PI 183967)	cpicucB420
CsaV3_5G021950	Cucsa.300100	Cucumber (Gy14) v1	cgycucB463
CsaV3_5G021950	CmaCh04G022290	Cucurbita maxima (Rimu)	cmacucB0890
CsaV3_5G021950	CmoCh04G023280	Cucurbita moschata (Rifu)	cmocucB0880
CsaV3_5G021950	Cp4.1LG01g19260	Cucurbita pepo (Zucchini)	cpecucB0549
CsaV3_5G021950	CsGy5G013880	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G021950	Carg17759	Silver-seed gourd	carcucB0516
CsaV3_5G021950	Cla009063	Watermelon (97103) v1	cucwmB442
CsaV3_5G021950	MELO3C005088	Melon (DHL92) v3.5.1	cucmeB352
CsaV3_5G021950	ClCG01G007910	Watermelon (Charleston Gray)	cucwcgB395
CsaV3_5G021950	Lsi09G008380	Bottle gourd (USVL1VR-Ls)	cuclsiB354
CsaV3_5G021950	MELO3C005088.2	Melon (DHL92) v3.6.1	cucmedB344
CsaV3_5G021950	Cla97C01G008260	Watermelon (97103) v2	cucwmbB360

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G021950	Cucurbita maxima (Rimu)	cmacucB0877
CsaV3_5G021950	Cucurbita pepo (Zucchini)	cpecucB0530
CsaV3_5G021950	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G021950	Bottle gourd (USVL1VR-Ls)	cuclsiB349
CsaV3_5G021950	Watermelon (Charleston Gray)	cucwcgB405
CsaV3_5G021950	Watermelon (97103) v2	cucwmbB386
CsaV3_5G021950	Wax gourd	cucwgoB463