CmoCh04G023280 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G023280
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionEthylene-responsive transcription factor, putative
LocationCmo_Chr04 : 17302726 .. 17303406 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCCATCGCCGTCAAAACCCAAGAGAAAGCAGCAGCAGCCGCCGCCGGAAACGACGCCCCACCGTTTCCTCGGAGTCCGACGGCGGCCATGGGGCCGATACGCCGCCGAGATCAGGGACCCTTCCACCAAAGAGCGTCACTGGCTCGGAACCTTCGACACCGCCGAGGAGGCCGCAGTCGCTTACGACTGCGCCGCCCGCTCCCTCCGCGGCTCCCTCGCTCGTACCAACTTCCTCTACTCCGATTCTCTCCCTCCTCCGCCGCCGCCTCCCTCCGCCGCCCTCCCTCCCAATCAAGCTCCTCTGCTTCTGCCTACTCCACCGCCTCATTTCCACCAAATCCCCCCTTCCAGAGACTCGCCGCCAAGCCTCTTCTCCGTCGACGGAGACGGCGGCGCTGAACTCCCGCCGTTTCCTCCCGCGATTTCGTCGGAATCAGAGAATTACAATTACAATTACAATTACAATTACAATTATAATCAGGGTTTAATGGAATTGCAGAACTCTGGATTTGAATATTTCAATCAGTCTCCGACTGAAATCGGATCGTGTTTCGGATTCGATTCGAGCAGCGAGTACGTGCATGGCCCGATCTTCAGCTCAATGCCGGCGGTTTCCGACGCCGGCGCCGGCGAGTTTCCGTCTCCGGCGGCTAATTTCTATTTCCCTCAGTCTTGA

mRNA sequence

ATGAGTCCATCGCCGTCAAAACCCAAGAGAAAGCAGCAGCAGCCGCCGCCGGAAACGACGCCCCACCGTTTCCTCGGAGTCCGACGGCGGCCATGGGGCCGATACGCCGCCGAGATCAGGGACCCTTCCACCAAAGAGCGTCACTGGCTCGGAACCTTCGACACCGCCGAGGAGGCCGCAGTCGCTTACGACTGCGCCGCCCGCTCCCTCCGCGGCTCCCTCGCTCGTACCAACTTCCTCTACTCCGATTCTCTCCCTCCTCCGCCGCCGCCTCCCTCCGCCGCCCTCCCTCCCAATCAAGCTCCTCTGCTTCTGCCTACTCCACCGCCTCATTTCCACCAAATCCCCCCTTCCAGAGACTCGCCGCCAAGCCTCTTCTCCGTCGACGGAGACGGCGGCGCTGAACTCCCGCCGTTTCCTCCCGCGATTTCGTCGGAATCAGAGAATTACAATTACAATTACAATTACAATTACAATTATAATCAGGGTTTAATGGAATTGCAGAACTCTGGATTTGAATATTTCAATCAGTCTCCGACTGAAATCGGATCGTGTTTCGGATTCGATTCGAGCAGCGAGTACGTGCATGGCCCGATCTTCAGCTCAATGCCGGCGGTTTCCGACGCCGGCGCCGGCGAGTTTCCGTCTCCGGCGGCTAATTTCTATTTCCCTCAGTCTTGA

Coding sequence (CDS)

ATGAGTCCATCGCCGTCAAAACCCAAGAGAAAGCAGCAGCAGCCGCCGCCGGAAACGACGCCCCACCGTTTCCTCGGAGTCCGACGGCGGCCATGGGGCCGATACGCCGCCGAGATCAGGGACCCTTCCACCAAAGAGCGTCACTGGCTCGGAACCTTCGACACCGCCGAGGAGGCCGCAGTCGCTTACGACTGCGCCGCCCGCTCCCTCCGCGGCTCCCTCGCTCGTACCAACTTCCTCTACTCCGATTCTCTCCCTCCTCCGCCGCCGCCTCCCTCCGCCGCCCTCCCTCCCAATCAAGCTCCTCTGCTTCTGCCTACTCCACCGCCTCATTTCCACCAAATCCCCCCTTCCAGAGACTCGCCGCCAAGCCTCTTCTCCGTCGACGGAGACGGCGGCGCTGAACTCCCGCCGTTTCCTCCCGCGATTTCGTCGGAATCAGAGAATTACAATTACAATTACAATTACAATTACAATTATAATCAGGGTTTAATGGAATTGCAGAACTCTGGATTTGAATATTTCAATCAGTCTCCGACTGAAATCGGATCGTGTTTCGGATTCGATTCGAGCAGCGAGTACGTGCATGGCCCGATCTTCAGCTCAATGCCGGCGGTTTCCGACGCCGGCGCCGGCGAGTTTCCGTCTCCGGCGGCTAATTTCTATTTCCCTCAGTCTTGA
Homology
[Close]
BLAST of CmoCh04G023280 vs. Swiss-Prot
Match: LEP_ARATH (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.6e-30
Identity = 99/219 (45.21%), Postives = 122/219 (55.71%), Query Frame = 1 

Query: 1   MSPSPSKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60
           M+ + SK K+KQ     +    RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAEEAA
Sbjct: 1   MNTTSSKSKKKQD----DQVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAA 60

Query: 61  VAYDCAARSLRGSLARTNFLYSDSLPPPPPPPSAALPPNQAPLLLPTPPPHFHQIPPSRD 120
           +AYD AARS+RG+ ARTNF+YSD +PP     S   P +  P   P PPP     PPS D
Sbjct: 61  LAYDRAARSMRGTRARTNFVYSD-MPPSSSVTSIVSPDDPPP---PPPPP----APPSND 120

Query: 121 SPPSLFSVDGDGGAELPPFPPAI----------SSESENYNYNYNYNYNYNQGLMELQNS 180
               +   +     + P   P            S  S +Y Y+ + +        +L NS
Sbjct: 121 PVDYMMMFNQYSSTDSPMLQPHCDQVDSYMFGGSQSSNSYCYSNDSSNELPPLPSDLSNS 180

Query: 181 GFEYFNQSPTEIGSCFGFDSSSEYVHGPIFSSMPAVSDA 210
            +     + T      G D SSEYVH P+FS MP VSD+
Sbjct: 181 CYSQPQWTWT------GDDYSSEYVHSPMFSRMPPVSDS 201

[Close]
BLAST of CmoCh04G023280 vs. Swiss-Prot
Match: ESR2_ARATH (Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.4e-22
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 

Query: 23  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAVAYDCAARSLRGSLARTNFLY 82
           R+ GVRRRPWGRYAAEIRDP +KER WLGTFDTAEEAA AYDCAAR++RG  ARTNF+Y
Sbjct: 57  RYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVY 115

[Close]
BLAST of CmoCh04G023280 vs. Swiss-Prot
Match: ERF87_ARATH (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.5e-22
Identity = 73/175 (41.71%), Postives = 95/175 (54.29%), Query Frame = 1 

Query: 2   SPSPSKPKRKQQQPPPETTPH----RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE 61
           S S    ++KQQQP P+   H    +++GVRRRPWGRYAAEIR+P+TKER+WLGTFDTAE
Sbjct: 13  SRSKKSHRQKQQQPQPQPQQHIEEIKYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAE 72

Query: 62  EAAVAYDCAARSLRGSLARTNFLYSDSLPPPPPPPSAALPPNQAPLLLPTPPPHFHQIPP 121
           EAA+AYD AARS+RG  ARTNF+YSD              P  + +     P    +   
Sbjct: 73  EAALAYDRAARSIRGLTARTNFVYSDM-------------PRGSSVTSFVSPDESQRFIS 132

Query: 122 SRDSPPSLFSVDGDGGAELPPFPPAISSESENYNYNYNYNYNYNQGLMELQNSGF 173
              +PPS                 A +S + N N  Y+   N NQ  +E   +G+
Sbjct: 133 ELFNPPSQLE--------------ATNSNNNNNNNLYSSTNNQNQNSIEFSYNGW 160

[Close]
BLAST of CmoCh04G023280 vs. Swiss-Prot
Match: ERF88_ARATH (Ethylene-responsive transcription factor ERF088 OS=Arabidopsis thaliana GN=ERF088 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.5e-22
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 1 

Query: 1  MSPSPSKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60
          M  S +K K K+++   E    ++LGVRRRPWGRYAAEIR+P TKERHWLGTFDTAEEAA
Sbjct: 1  MLKSSNKRKSKEEKKLQEG---KYLGVRRRPWGRYAAEIRNPFTKERHWLGTFDTAEEAA 60

Query: 61 VAYDCAARSLRGSLARTNFLYSDS 85
           AYD AARS+ GSLA TNF Y+++
Sbjct: 61 FAYDVAARSISGSLATTNFFYTEN 81

[Close]
BLAST of CmoCh04G023280 vs. Swiss-Prot
Match: ERF86_ARATH (Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF086 PE=2 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 3.8e-21
Identity = 59/100 (59.00%), Postives = 67/100 (67.00%), Query Frame = 1 

Query: 18  ETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAVAYDCAARSLRGSLART 77
           +  P RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTA EAA+AYD AA S+RG+ ART
Sbjct: 49  QAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMRGTQART 108

Query: 78  NFLYSDS-----LPPPPPPPSAALPPNQAPLLLPTPPPHF 113
           NF+Y+ +     L  P        P N     LP   P F
Sbjct: 109 NFVYTPTDVHTILTNPNLHSLIVSPYNNNQSFLPNSSPQF 148

[Close]
BLAST of CmoCh04G023280 vs. TrEMBL
Match: A0A059AQP3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01576 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.5e-29
Identity = 111/252 (44.05%), Postives = 134/252 (53.17%), Query Frame = 1 

Query: 2   SPSPSKPKRKQQQPPPETTPH---RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEE 61
           SPS S    K+Q P  E++     RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEE
Sbjct: 3   SPSSSSKGNKKQPPAGESSAAGGGRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEE 62

Query: 62  AAVAYDCAARSLRGSLARTNFLYSD--------SLPPPPPPPSAALPP---NQAPLLLPT 121
           AA+AYD AARS+RGS ARTNF+YSD        S+  P         P   N AP   P 
Sbjct: 63  AALAYDRAARSMRGSRARTNFVYSDLPAGSSVTSILSPDEAQQQNFSPIFANSAPRPDPA 122

Query: 122 PPPHFHQIPPSRDSPPSLFSVDGD--------GGA---------ELPPFPPAISSESENY 181
           P         S  S  + +S   D        GGA         ELPP P  +S  S  Y
Sbjct: 123 PQLDAGGYAESAWSTSAYYSQQADAAPYGGGGGGAYSQCHYDNVELPPLPSDMSGYS-GY 182

Query: 182 NYNYNYNYNYNQGLMELQNSGFEYFNQSPTEIGSCFGFDSSSEYVHGPIFSSMPAVSDAG 223
           + +   +Y+Y   +     S F +   + +  G  FGFDS+ EYVH P+FS MP VSD+ 
Sbjct: 183 SGSDTSSYSYGDTVPSNCYSDF-HDPAAASGNGPSFGFDSTEEYVHSPLFSRMPPVSDSV 242

[Close]
BLAST of CmoCh04G023280 vs. TrEMBL
Match: V4LG01_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015796mg PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.8e-29
Identity = 104/234 (44.44%), Postives = 124/234 (52.99%), Query Frame = 1 

Query: 6   SKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAVAYDC 65
           SK K+KQ     E +  RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAEEAA+AYD 
Sbjct: 4   SKSKKKQ-----EDSGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDR 63

Query: 66  AARSLRGSLARTNFLYSDSLP------------PPPPPPSAALPP------------NQ- 125
           AARS+RG+ ARTNF+YSD  P            PPPPPP AA PP            NQ 
Sbjct: 64  AARSMRGTRARTNFVYSDMPPSSSVTSIRSPDDPPPPPPPAATPPCSNDPVDYMMMFNQY 123

Query: 126 APLLLPTPPPHFHQIPPSRDSPPSLF----SVDGDGGAELPPFPPAISSESENYNYNYNY 185
           +    P PP +  Q+  S      +F    S   +  +ELPP P  +SS           
Sbjct: 124 SSTDSPMPPLNSDQMDSS-----YMFGGSPSCYSNSSSELPPLPSDLSSSC--------- 183

Query: 186 NYNYNQGLMELQN-SGFEYFNQSPTEIGSCFGFDSSSEYVHGPIFSSMPAVSDA 210
              Y+Q    +++ S   YF                 EYVH P+FS MP VSD+
Sbjct: 184 ---YSQQSWSVEDYSSATYF---------------EGEYVHSPMFSRMPPVSDS 200

[Close]
BLAST of CmoCh04G023280 vs. TrEMBL
Match: R0HAG6_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002480mg PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.8e-28
Identity = 106/226 (46.90%), Postives = 132/226 (58.41%), Query Frame = 1 

Query: 1   MSPSPSKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60
           M+ + SK K+KQ++        RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAEEAA
Sbjct: 1   MNTTSSKSKKKQEEAGT-----RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAA 60

Query: 61  VAYDCAARSLRGSLARTNFLYSDSLPP------------PPPPPSAALPPNQAPLLLPTP 120
           +AYD AARS+RG+ ARTNF+YSD +PP            PPPPP A  PP+  P+     
Sbjct: 61  LAYDRAARSMRGTRARTNFVYSD-MPPSSSVTSIVSPDDPPPPPPAPAPPSDDPV---DY 120

Query: 121 PPHFHQIPPSRDSP---PSLFSVDG--DGGAELPPFPPAISSESENYNYNYNYNYNYNQG 180
              F+Q   S DSP   P    VD    GG++         + S +Y Y+ N +      
Sbjct: 121 MMMFNQY-SSTDSPMLQPHCDQVDSYMFGGSQ---------ASSTSYCYSNNSSNELPPL 180

Query: 181 LMELQNSGFEYFNQSPTEIGSCFGFDSSSEYVHGPIFSSMPAVSDA 210
             +L NS    +NQ      +  G D S+EYVH P+FS MP VSD+
Sbjct: 181 PSDLSNS---CYNQPQ---WTWSGDDYSAEYVHSPMFSRMPPVSDS 201

[Close]
BLAST of CmoCh04G023280 vs. TrEMBL
Match: A0A0D3EFN3_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.8e-28
Identity = 97/234 (41.45%), Postives = 123/234 (52.56%), Query Frame = 1 

Query: 1   MSPSPSKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60
           M+ + SK K+KQ++        RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAEEAA
Sbjct: 1   MNTTSSKSKKKQEEGGA-----RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAA 60

Query: 61  VAYDCAARSLRGSLARTNFLYSD-------------SLPPPPPPPSAALPP------NQA 120
           +AYD AARS+RG+ ARTNF+YSD               PPPPPPP+AA PP      +  
Sbjct: 61  LAYDRAARSMRGTRARTNFVYSDMPPSSSVTSIISPDDPPPPPPPTAAAPPCSNDPADYM 120

Query: 121 PLLLPTPPPHFHQIPPSRDSPPSLFSVDG------DGGAELPPFPPAISSESENYNYNYN 180
            +           + P  D   S +   G      +  +ELPP P               
Sbjct: 121 MMFNQYSSTDSLMLQPHSDQVESSYMFGGSSSCYSNSSSELPPLP--------------- 180

Query: 181 YNYNYNQGLMELQNSGFEYFNQSPTEIGSCFGFDSSSEYVHGPIFSSMPAVSDA 210
                     +L NS +     S  +  +   F+   +YVHGP+FS+MP VSD+
Sbjct: 181 ---------SDLSNSCYSQPQWSVDDYSTATYFE--GDYVHGPMFSTMPPVSDS 203

[Close]
BLAST of CmoCh04G023280 vs. TrEMBL
Match: M4CPT3_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.8e-28
Identity = 100/230 (43.48%), Postives = 124/230 (53.91%), Query Frame = 1 

Query: 6   SKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAVAYDC 65
           SK K+KQ++        +FLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAEEAA+AYD 
Sbjct: 4   SKTKKKQEE-----VGTKFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDR 63

Query: 66  AARSLRGSLARTNFLYSDSLP------------PPPPPPSAAL--PPNQAPLLL------ 125
           A+RS+RG+ ARTNF+YSD  P            PPPPPP+A+L  P +    ++      
Sbjct: 64  ASRSMRGTRARTNFVYSDMPPSSSVTSIVSPDDPPPPPPAASLTCPNDPVDYMMMFNQYS 123

Query: 126 ----PTPPPHFHQIPPSR--DSPPSLFSVDGDGGAELPPFPPAISSESENYNYNYNYNYN 185
               P   PH  Q+  S      PS +S   +   ELPP P  +SS            Y+
Sbjct: 124 STDSPMLQPHSDQMESSYMFGGSPSCYS---NSSCELPPLPSDLSSSC----------YS 183

Query: 186 YNQGLMELQNSGFEYFNQSPTEIGSCFGFDSSSEYVHGPIFSSMPAVSDA 210
             Q  +E   S   YF                 EYVH P+FS MP+VSD+
Sbjct: 184 QQQWSVE-DFSSANYF---------------EGEYVHSPMFSRMPSVSDS 199

[Close]
BLAST of CmoCh04G023280 vs. TAIR10
Match: AT5G13910.1 (AT5G13910.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 132.1 bits (331), Expect = 4.3e-31
Identity = 99/219 (45.21%), Postives = 122/219 (55.71%), Query Frame = 1 

Query: 1   MSPSPSKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60
           M+ + SK K+KQ     +    RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAEEAA
Sbjct: 1   MNTTSSKSKKKQD----DQVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAA 60

Query: 61  VAYDCAARSLRGSLARTNFLYSDSLPPPPPPPSAALPPNQAPLLLPTPPPHFHQIPPSRD 120
           +AYD AARS+RG+ ARTNF+YSD +PP     S   P +  P   P PPP     PPS D
Sbjct: 61  LAYDRAARSMRGTRARTNFVYSD-MPPSSSVTSIVSPDDPPP---PPPPP----APPSND 120

Query: 121 SPPSLFSVDGDGGAELPPFPPAI----------SSESENYNYNYNYNYNYNQGLMELQNS 180
               +   +     + P   P            S  S +Y Y+ + +        +L NS
Sbjct: 121 PVDYMMMFNQYSSTDSPMLQPHCDQVDSYMFGGSQSSNSYCYSNDSSNELPPLPSDLSNS 180

Query: 181 GFEYFNQSPTEIGSCFGFDSSSEYVHGPIFSSMPAVSDA 210
            +     + T      G D SSEYVH P+FS MP VSD+
Sbjct: 181 CYSQPQWTWT------GDDYSSEYVHSPMFSRMPPVSDS 201

[Close]
BLAST of CmoCh04G023280 vs. TAIR10
Match: AT1G24590.1 (AT1G24590.1 DORNROSCHEN-like)

HSP 1 Score: 106.7 bits (265), Expect = 1.9e-23
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 

Query: 23  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAVAYDCAARSLRGSLARTNFLY 82
           R+ GVRRRPWGRYAAEIRDP +KER WLGTFDTAEEAA AYDCAAR++RG  ARTNF+Y
Sbjct: 57  RYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVY 115

[Close]
BLAST of CmoCh04G023280 vs. TAIR10
Match: AT1G28160.1 (AT1G28160.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-23
Identity = 73/175 (41.71%), Postives = 95/175 (54.29%), Query Frame = 1 

Query: 2   SPSPSKPKRKQQQPPPETTPH----RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE 61
           S S    ++KQQQP P+   H    +++GVRRRPWGRYAAEIR+P+TKER+WLGTFDTAE
Sbjct: 13  SRSKKSHRQKQQQPQPQPQQHIEEIKYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAE 72

Query: 62  EAAVAYDCAARSLRGSLARTNFLYSDSLPPPPPPPSAALPPNQAPLLLPTPPPHFHQIPP 121
           EAA+AYD AARS+RG  ARTNF+YSD              P  + +     P    +   
Sbjct: 73  EAALAYDRAARSIRGLTARTNFVYSDM-------------PRGSSVTSFVSPDESQRFIS 132

Query: 122 SRDSPPSLFSVDGDGGAELPPFPPAISSESENYNYNYNYNYNYNQGLMELQNSGF 173
              +PPS                 A +S + N N  Y+   N NQ  +E   +G+
Sbjct: 133 ELFNPPSQLE--------------ATNSNNNNNNNLYSSTNNQNQNSIEFSYNGW 160

[Close]
BLAST of CmoCh04G023280 vs. TAIR10
Match: AT1G12890.1 (AT1G12890.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-23
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 1 

Query: 1  MSPSPSKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60
          M  S +K K K+++   E    ++LGVRRRPWGRYAAEIR+P TKERHWLGTFDTAEEAA
Sbjct: 1  MLKSSNKRKSKEEKKLQEG---KYLGVRRRPWGRYAAEIRNPFTKERHWLGTFDTAEEAA 60

Query: 61 VAYDCAARSLRGSLARTNFLYSDS 85
           AYD AARS+ GSLA TNF Y+++
Sbjct: 61 FAYDVAARSISGSLATTNFFYTEN 81

[Close]
BLAST of CmoCh04G023280 vs. TAIR10
Match: AT5G18560.1 (AT5G18560.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-22
Identity = 59/100 (59.00%), Postives = 67/100 (67.00%), Query Frame = 1 

Query: 18  ETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAVAYDCAARSLRGSLART 77
           +  P RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTA EAA+AYD AA S+RG+ ART
Sbjct: 49  QAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMRGTQART 108

Query: 78  NFLYSDS-----LPPPPPPPSAALPPNQAPLLLPTPPPHF 113
           NF+Y+ +     L  P        P N     LP   P F
Sbjct: 109 NFVYTPTDVHTILTNPNLHSLIVSPYNNNQSFLPNSSPQF 148

[Close]
BLAST of CmoCh04G023280 vs. NCBI nr
Match: gi|449467369|ref|XP_004151396.1| (PREDICTED: ethylene-responsive transcription factor LEP-like [Cucumis sativus])

HSP 1 Score: 292.7 bits (748), Expect = 5.4e-76
Identity = 161/232 (69.40%), Postives = 177/232 (76.29%), Query Frame = 1 

Query: 1   MSPSPSKPKRKQQQPPP-ETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEA 60
           MSPSPSKPKRK   PPP E+TPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE+A
Sbjct: 1   MSPSPSKPKRKHHPPPPAESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDA 60

Query: 61  AVAYDCAARSLRGSLARTNFLYSDSLPPPPPPPSAAL-----PPNQAPLLLPTPPPHFHQ 120
           A+AYD AARSLRGSLARTNFLYSDS PPPPP  SA++     PP   PLL PTPP   HQ
Sbjct: 61  AIAYDRAARSLRGSLARTNFLYSDSPPPPPPLYSASIHHPNQPPLFLPLLPPTPPSLLHQ 120

Query: 121 IPPSRDSPPSLFSVDGDGGAELPPFPPAISSESENYNYNYNYNYNYNQGLMELQNSGFEY 180
            PP+ DS   + S D D  AELPPFPPAISSES + +YN       N G+ME QN GFE 
Sbjct: 121 FPPAGDSLSGIISGDYDASAELPPFPPAISSESVDCDYN-------NYGVMESQNVGFEC 180

Query: 181 FNQSPTEIGSCFGFDSSSEYVHGPIFSSMPAVSDAGAGEFPSPAANFYFPQS 227
           F+QS   IGSC GFDSSS+Y++ P+  SMP VSD GAG+F SPA NFY PQS
Sbjct: 181 FDQSSIGIGSCLGFDSSSDYIYNPMLGSMPTVSDVGAGDFESPAGNFYLPQS 225

[Close]
BLAST of CmoCh04G023280 vs. NCBI nr
Match: gi|659074565|ref|XP_008437672.1| (PREDICTED: ethylene-responsive transcription factor LEP [Cucumis melo])

HSP 1 Score: 282.0 bits (720), Expect = 9.5e-73
Identity = 154/227 (67.84%), Postives = 168/227 (74.01%), Query Frame = 1 

Query: 5   PSKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAVAYD 64
           P  PK      P E TPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA+AYD
Sbjct: 5   PQNPKESTTPAPAEPTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAIAYD 64

Query: 65  CAARSLRGSLARTNFLYSDSLPPPPPPPSAALPPNQAPLLL----PTPPPHFHQIPPSRD 124
            AARSLRGSLARTNFLYSDS PPPPPP SA++ P+Q PL L    P PPP FHQ PP+ D
Sbjct: 65  RAARSLRGSLARTNFLYSDSPPPPPPPYSASIHPSQPPLFLPLLPPPPPPLFHQFPPAGD 124

Query: 125 SPPSLFSVDGDG-GAELPPFPPAISSESENYNYNYNYNYNYNQGLMELQNSGFEYFNQSP 184
           SP  +   D DG  AELPPFPPAISSESEN +YN       N G ME QN GFE F+QS 
Sbjct: 125 SPSGIIYGDYDGSSAELPPFPPAISSESENCDYN-------NYGAMESQNVGFECFDQSS 184

Query: 185 TEIGSCFGFDSSSEYVHGPIFSSMPAVSDAGAGEFPSPAANFYFPQS 227
             +GSC GFDSS +Y++ P+  SM  VSDAG G+  SPAANFY PQS
Sbjct: 185 IGMGSCLGFDSSGDYMYNPMLGSMATVSDAGTGDLQSPAANFYLPQS 224

[Close]
BLAST of CmoCh04G023280 vs. NCBI nr
Match: gi|296082248|emb|CBI21253.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 103/229 (44.98%), Postives = 136/229 (59.39%), Query Frame = 1 

Query: 1   MSPSPSKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60
           M+PS SK K+KQ Q   + T  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA
Sbjct: 1   MNPSTSKSKKKQTQQ--QETSGRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60

Query: 61  VAYDCAARSLRGSLARTNFLYSDSLPPPPPPPSAALPPNQAPLLLPTPPPHFHQIPPSRD 120
           +AYD AARS+RGS ARTNF+YSD   PP    ++ + P+++   LP    HF  +  + +
Sbjct: 61  LAYDRAARSMRGSRARTNFVYSDM--PPGSSVTSIISPDES---LPDFSSHFPLVD-NMN 120

Query: 121 SPPSLFSVDGDGGAELPPFPPAISSESENYNYNYNY-NYNYNQGLMELQNSGFEYFNQSP 180
              +  +       +LPPFP  +S +  +  +      +  +  L     +GF     SP
Sbjct: 121 GTTTTTNNQFYNANDLPPFPSQVSDQLPSSGFEMEQATWGDSTSL-----AGFSEQRTSP 180

Query: 181 TEI-----GSCFGFDSSSEYVHGPIFSSMPAVSDAGAGEFPSPAANFYF 224
            E      GS  GFDS+ +YVH P+F  MP VSD     F   +++++F
Sbjct: 181 NEFDSAGGGSYLGFDST-QYVHSPLFGRMPPVSDTPPDGFDLGSSSYFF 215

[Close]
BLAST of CmoCh04G023280 vs. NCBI nr
Match: gi|657995756|ref|XP_008390226.1| (PREDICTED: ethylene-responsive transcription factor LEP-like [Malus domestica])

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-29
Identity = 114/274 (41.61%), Postives = 136/274 (49.64%), Query Frame = 1 

Query: 4   SPSKPKRKQQQPP---PETTPH-RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEA 63
           S SK KRKQQQ     P+T    RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEA
Sbjct: 17  SSSKTKRKQQQQQTQQPQTQQETRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEA 76

Query: 64  AVAYDCAARSLRGSLARTNFLYSDSLPPPPPPPSAALPPNQA----PLLLPTPPPHFHQI 123
           A+AYD AARS+RGS ARTNF+YSD   P     ++ + P+++         TP P  H  
Sbjct: 77  ALAYDRAARSMRGSKARTNFVYSDM--PHGSSVTSIISPDESQRDMSAFFTTPLPQTHSQ 136

Query: 124 PPSRDSPP--------SLFSVDGDGGA---------------------------ELPPFP 183
             +    P          ++V G                               ELPP P
Sbjct: 137 SQTHTQQPIFTHQDPFDAYTVSGGSSTEFGSGSYGPISGVVADESGYQSQSHTHELPPLP 196

Query: 184 PAISSESENYNYNYNYNYNYNQGLME----LQNSGFEYFNQSPTE-------IGSCFGFD 224
           P +SS S  Y           +G+M        SGF  F+Q  T         GS  GFD
Sbjct: 197 PCVSS-STCYE---------PEGIMSSDGVWNESGFYGFSQPTTNNGLDSLVSGSYVGFD 256

[Close]
BLAST of CmoCh04G023280 vs. NCBI nr
Match: gi|694359517|ref|XP_009359853.1| (PREDICTED: ethylene-responsive transcription factor LEP-like [Pyrus x bretschneideri])

HSP 1 Score: 137.1 bits (344), Expect = 3.8e-29
Identity = 111/262 (42.37%), Postives = 138/262 (52.67%), Query Frame = 1 

Query: 3   PSPSKPKRKQQQPP---PETTPH--RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE 62
           PS +K KRKQQQ     P+ T    RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE
Sbjct: 16  PSSTKTKRKQQQQQTQQPQQTQQETRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE 75

Query: 63  EAAVAYDCAARSLRGSLARTNFLYSD--------SLPPPPPPPSA----ALPPNQAPLLL 122
           EAA+AYD +ARS+RGS ARTNF+YSD        S+  P    SA    +LP   A    
Sbjct: 76  EAALAYDRSARSMRGSKARTNFVYSDMPHGSSVTSIISPEEDVSAFFTTSLPQTHAQSQT 135

Query: 123 PTPPPHFHQIPPSRDSPPSLFSVDGDGGAELPPFPPAISSESENYNYNYNYN-------- 182
            T     HQ P    S     S + + G+ +P F   ++ ES + + ++ +         
Sbjct: 136 HTQQSFTHQDPFDAYSFSGSSSAENESGSYVPAF-GVVADESGSQSQSHTHELPPLPACV 195

Query: 183 -----YNYNQGLMEL----QNSGFEYFNQSPTE-------IGSCFGFDSSSEYVHGPIFS 224
                Y    G+M        SGF  F+   T         GS  GFDS+    H P+F 
Sbjct: 196 SSSTCYGPEGGIMSFDGVGNESGFYEFSDPTTNNGLDSLVSGSYVGFDSNEFVQHSPLFG 255

The following BLAST results are available for this feature:
BLAST of CmoCh04G023280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LEP_ARATH7.6e-3045.21Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2... [more]
ESR2_ARATH3.4e-2281.36Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE... [more]
ERF87_ARATH4.5e-2241.71Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF08... [more]
ERF88_ARATH4.5e-2265.48Ethylene-responsive transcription factor ERF088 OS=Arabidopsis thaliana GN=ERF08... [more]
ERF86_ARATH3.8e-2159.00Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF08... [more]
BLAST of CmoCh04G023280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A059AQP3_EUCGR4.5e-2944.05Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01576 PE=4 SV=1[more]
V4LG01_EUTSA5.8e-2944.44Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015796mg PE=4 SV=1[more]
R0HAG6_9BRAS3.8e-2846.90Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002480mg PE=4 SV=1[more]
A0A0D3EFN3_BRAOL3.8e-2841.45Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
M4CPT3_BRARP3.8e-2843.48Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
BLAST of CmoCh04G023280 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G13910.14.3e-3145.21 Integrase-type DNA-binding superfamily protein[more]
AT1G24590.11.9e-2381.36 DORNROSCHEN-like[more]
AT1G28160.12.5e-2341.71 Integrase-type DNA-binding superfamily protein[more]
AT1G12890.12.5e-2365.48 Integrase-type DNA-binding superfamily protein[more]
AT5G18560.12.1e-2259.00 Integrase-type DNA-binding superfamily protein[more]
BLAST of CmoCh04G023280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449467369|ref|XP_004151396.1|5.4e-7669.40PREDICTED: ethylene-responsive transcription factor LEP-like [Cucumis sativus][more]
gi|659074565|ref|XP_008437672.1|9.5e-7367.84PREDICTED: ethylene-responsive transcription factor LEP [Cucumis melo][more]
gi|296082248|emb|CBI21253.3|1.1e-3144.98unnamed protein product [Vitis vinifera][more]
gi|657995756|ref|XP_008390226.1|1.3e-2941.61PREDICTED: ethylene-responsive transcription factor LEP-like [Malus domestica][more]
gi|694359517|ref|XP_009359853.1|3.8e-2942.37PREDICTED: ethylene-responsive transcription factor LEP-like [Pyrus x bretschnei... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001471AP2/ERF_dom
IPR016177DNA-bd_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0010030 positive regulation of seed germination
biological_process GO:0009739 response to gibberellin
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G023280.1CmoCh04G023280.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 46..62
score: 3.5E-8coord: 24..35
score: 3.
IPR001471AP2/ERF domainGENE3DG3DSA:3.30.730.10coord: 24..80
score: 2.9
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 26..72
score: 2.8
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 23..86
score: 4.7
IPR001471AP2/ERF domainPROFILEPS51032AP2_ERFcoord: 23..80
score: 20
IPR016177DNA-binding domainunknownSSF54171DNA-binding domaincoord: 24..81
score: 5.36
NoneNo IPR availablePANTHERPTHR31677FAMILY NOT NAMEDcoord: 1..208
score: 4.0
NoneNo IPR availablePANTHERPTHR31677:SF5ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEPcoord: 1..208
score: 4.0