Cp4.1LG01g19260 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g19260
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionEthylene-responsive transcription factor, putative
LocationCp4.1LG01 : 16482714 .. 16483382 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCCATCGCCGTCAAAACCCAAGAGAAAGCAGCAGCAGCCGCCGCCGGAAACGACGCCCCACCGTTTCCTCGGAGTCCGACGGCGGCCATGGGGCCGATACGCCGCCGAGATCAGGGACCCTTCCACCAAAGAGCGTCACTGGCTCGGAACCTTCGACACCGCCGAGGAGGCCGCAGTCGCTTACGACTGCGCCGCCCGCTCCCTCCGCGGCTCCCTCGCTCGTACCAATTTCCTCTACTCCGATTCTCTCCCCCCTCCGCCGCCACCTCCCTCCGCCGCCCTCCCTCCCAATCAAGCTCCTCTGCTTCTGCCTACTCCACCGCCTCATTTCCACCAAATCCCCCCTTCCAGAGACTCGCCGCCAAGCCTCTTCTCCGTCGACGGAGACGGCGGCGCTGAACTCCCGCCGTTTCCTCCCGCGATTTCGTCGGAATCCGAGAATTACAATTACAATTACAATTATAATCAGGGTTTAATGGAATTGCAGAACTCTGGATTTGAATATTTCGATCAGTCTCCGACTGACATCGGATCGTGTTTCGGATTTGATTCGAGCAGCGAGTACGTGCATGGCCCGATCTTCGGCTCAATGCCGGCTGTTTCCGACGCCGGCGCCGGCGAGTTTCTGTCTCCGGCGGCTAATTTCTATTTCCCTCAGTCTTGA

mRNA sequence

ATGAGTCCATCGCCGTCAAAACCCAAGAGAAAGCAGCAGCAGCCGCCGCCGGAAACGACGCCCCACCGTTTCCTCGGAGTCCGACGGCGGCCATGGGGCCGATACGCCGCCGAGATCAGGGACCCTTCCACCAAAGAGCGTCACTGGCTCGGAACCTTCGACACCGCCGAGGAGGCCGCAGTCGCTTACGACTGCGCCGCCCGCTCCCTCCGCGGCTCCCTCGCTCGTACCAATTTCCTCTACTCCGATTCTCTCCCCCCTCCGCCGCCACCTCCCTCCGCCGCCCTCCCTCCCAATCAAGCTCCTCTGCTTCTGCCTACTCCACCGCCTCATTTCCACCAAATCCCCCCTTCCAGAGACTCGCCGCCAAGCCTCTTCTCCGTCGACGGAGACGGCGGCGCTGAACTCCCGCCGTTTCCTCCCGCGATTTCGTCGGAATCCGAGAATTACAATTACAATTACAATTATAATCAGGGTTTAATGGAATTGCAGAACTCTGGATTTGAATATTTCGATCAGTCTCCGACTGACATCGGATCGTGTTTCGGATTTGATTCGAGCAGCGAGTACGTGCATGGCCCGATCTTCGGCTCAATGCCGGCTGTTTCCGACGCCGGCGCCGGCGAGTTTCTGTCTCCGGCGGCTAATTTCTATTTCCCTCAGTCTTGA

Coding sequence (CDS)

ATGAGTCCATCGCCGTCAAAACCCAAGAGAAAGCAGCAGCAGCCGCCGCCGGAAACGACGCCCCACCGTTTCCTCGGAGTCCGACGGCGGCCATGGGGCCGATACGCCGCCGAGATCAGGGACCCTTCCACCAAAGAGCGTCACTGGCTCGGAACCTTCGACACCGCCGAGGAGGCCGCAGTCGCTTACGACTGCGCCGCCCGCTCCCTCCGCGGCTCCCTCGCTCGTACCAATTTCCTCTACTCCGATTCTCTCCCCCCTCCGCCGCCACCTCCCTCCGCCGCCCTCCCTCCCAATCAAGCTCCTCTGCTTCTGCCTACTCCACCGCCTCATTTCCACCAAATCCCCCCTTCCAGAGACTCGCCGCCAAGCCTCTTCTCCGTCGACGGAGACGGCGGCGCTGAACTCCCGCCGTTTCCTCCCGCGATTTCGTCGGAATCCGAGAATTACAATTACAATTACAATTATAATCAGGGTTTAATGGAATTGCAGAACTCTGGATTTGAATATTTCGATCAGTCTCCGACTGACATCGGATCGTGTTTCGGATTTGATTCGAGCAGCGAGTACGTGCATGGCCCGATCTTCGGCTCAATGCCGGCTGTTTCCGACGCCGGCGCCGGCGAGTTTCTGTCTCCGGCGGCTAATTTCTATTTCCCTCAGTCTTGA

Protein sequence

MSPSPSKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAVAYDCAARSLRGSLARTNFLYSDSLPPPPPPPSAALPPNQAPLLLPTPPPHFHQIPPSRDSPPSLFSVDGDGGAELPPFPPAISSESENYNYNYNYNQGLMELQNSGFEYFDQSPTDIGSCFGFDSSSEYVHGPIFGSMPAVSDAGAGEFLSPAANFYFPQS
Homology
[Close]
BLAST of Cp4.1LG01g19260 vs. Swiss-Prot
Match: LEP_ARATH (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.3e-31
Identity = 96/214 (44.86%), Postives = 121/214 (56.54%), Query Frame = 1 

Query: 1   MSPSPSKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60
           M+ + SK K+KQ     +    RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAEEAA
Sbjct: 1   MNTTSSKSKKKQD----DQVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAA 60

Query: 61  VAYDCAARSLRGSLARTNFLYSDSLPPPPPPPSAALPPNQAPLLLPTPPPHFHQIPPSRD 120
           +AYD AARS+RG+ ARTNF+YSD +PP     S   P +  P   P PPP     PPS D
Sbjct: 61  LAYDRAARSMRGTRARTNFVYSD-MPPSSSVTSIVSPDDPPP---PPPPP----APPSND 120

Query: 121 SPPSLFSVDGDGGAELPPFPPAISSESENYNYNYNYNQGLMELQNSGFEYFDQSPTDI-G 180
               +   +     + P   P    + ++Y +  + +       N         P+D+  
Sbjct: 121 PVDYMMMFNQYSSTDSPMLQPH-CDQVDSYMFGGSQSSNSYCYSNDSSNELPPLPSDLSN 180

Query: 181 SCF--------GFDSSSEYVHGPIFGSMPAVSDA 206
           SC+        G D SSEYVH P+F  MP VSD+
Sbjct: 181 SCYSQPQWTWTGDDYSSEYVHSPMFSRMPPVSDS 201

[Close]
BLAST of Cp4.1LG01g19260 vs. Swiss-Prot
Match: ESR2_ARATH (Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.4e-22
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 

Query: 23  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAVAYDCAARSLRGSLARTNFLY 82
           R+ GVRRRPWGRYAAEIRDP +KER WLGTFDTAEEAA AYDCAAR++RG  ARTNF+Y
Sbjct: 57  RYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVY 115

[Close]
BLAST of Cp4.1LG01g19260 vs. Swiss-Prot
Match: ERF88_ARATH (Ethylene-responsive transcription factor ERF088 OS=Arabidopsis thaliana GN=ERF088 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.4e-22
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 1 

Query: 1  MSPSPSKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60
          M  S +K K K+++   E    ++LGVRRRPWGRYAAEIR+P TKERHWLGTFDTAEEAA
Sbjct: 1  MLKSSNKRKSKEEKKLQEG---KYLGVRRRPWGRYAAEIRNPFTKERHWLGTFDTAEEAA 60

Query: 61 VAYDCAARSLRGSLARTNFLYSDS 85
           AYD AARS+ GSLA TNF Y+++
Sbjct: 61 FAYDVAARSISGSLATTNFFYTEN 81

[Close]
BLAST of Cp4.1LG01g19260 vs. Swiss-Prot
Match: ERF86_ARATH (Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF086 PE=2 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 3.7e-21
Identity = 59/100 (59.00%), Postives = 67/100 (67.00%), Query Frame = 1 

Query: 18  ETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAVAYDCAARSLRGSLART 77
           +  P RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTA EAA+AYD AA S+RG+ ART
Sbjct: 49  QAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMRGTQART 108

Query: 78  NFLYSDS-----LPPPPPPPSAALPPNQAPLLLPTPPPHF 113
           NF+Y+ +     L  P        P N     LP   P F
Sbjct: 109 NFVYTPTDVHTILTNPNLHSLIVSPYNNNQSFLPNSSPQF 148

[Close]
BLAST of Cp4.1LG01g19260 vs. Swiss-Prot
Match: ERF87_ARATH (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.1e-20
Identity = 79/197 (40.10%), Postives = 106/197 (53.81%), Query Frame = 1 

Query: 2   SPSPSKPKRKQQQPPPETTPH----RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE 61
           S S    ++KQQQP P+   H    +++GVRRRPWGRYAAEIR+P+TKER+WLGTFDTAE
Sbjct: 13  SRSKKSHRQKQQQPQPQPQQHIEEIKYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAE 72

Query: 62  EAAVAYDCAARSLRGSLARTNFLYSDSLPPPPPPPSAALPPNQAPLL--LPTPPPHFHQI 121
           EAA+AYD AARS+RG  ARTNF+YSD +P      S   P      +  L  PP      
Sbjct: 73  EAALAYDRAARSIRGLTARTNFVYSD-MPRGSSVTSFVSPDESQRFISELFNPPSQLEAT 132

Query: 122 PPSRDSPPSLFSVDGDGGAELPPFPPAISSESENYN-YNYNYNQGLMELQ------NSGF 181
             + ++  +L+S                S+ ++N N   ++YN    E +       S  
Sbjct: 133 NSNNNNNNNLYS----------------STNNQNQNSIEFSYNGWPQEAECGYQSITSNA 192

Query: 182 EYFDQS--PTDIGSCFG 184
           E+ D    P    +CFG
Sbjct: 193 EHCDHELPPLPPSTCFG 192

[Close]
BLAST of Cp4.1LG01g19260 vs. TrEMBL
Match: F6H417_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g00860 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.8e-31
Identity = 109/265 (41.13%), Postives = 137/265 (51.70%), Query Frame = 1 

Query: 1   MSPSPSKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60
           M+PS SK K+KQ Q   + T  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA
Sbjct: 1   MNPSTSKSKKKQTQQ--QETSGRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60

Query: 61  VAYDCAARSLRGSLARTNFLYSDSLPPPPPPPSAALPPNQA----------PLLLPTPPP 120
           +AYD AARS+RGS ARTNF+YSD   PP    ++ + P+++          P   P P P
Sbjct: 61  LAYDRAARSMRGSRARTNFVYSDM--PPGSSVTSIISPDESLPDFSSHFVPPTTQPNPNP 120

Query: 121 HF-------HQIPPSRDSPPSLFS------------VDGDGGA------------ELPPF 180
           +        HQ       P    S            VD   G             +LPPF
Sbjct: 121 NLFFNPTECHQFAFQGQFPTETNSWDYSNLYQEQPLVDNMNGTTTTTNNQFYNANDLPPF 180

Query: 181 PPAISSESENYNYNYNYNQGLMELQNSGFEYFDQSPTDI-----GSCFGFDSSSEYVHGP 220
           P  +S +  +  +             +GF     SP +      GS  GFDS+ +YVH P
Sbjct: 181 PSQVSDQLPSSGFEMEQATWGDSTSLAGFSEQRTSPNEFDSAGGGSYLGFDST-QYVHSP 240

[Close]
BLAST of Cp4.1LG01g19260 vs. TrEMBL
Match: A5AUS3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025283 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.8e-31
Identity = 109/265 (41.13%), Postives = 137/265 (51.70%), Query Frame = 1 

Query: 1   MSPSPSKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60
           M+PS SK K+KQ Q   + T  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA
Sbjct: 326 MNPSTSKSKKKQTQQ--QETSGRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 385

Query: 61  VAYDCAARSLRGSLARTNFLYSDSLPPPPPPPSAALPPNQA----------PLLLPTPPP 120
           +AYD AARS+RGS ARTNF+YSD   PP    ++ + P+++          P   P P P
Sbjct: 386 LAYDRAARSMRGSRARTNFVYSDM--PPGSSVTSIISPDESLPDFSSHFVPPTTQPNPNP 445

Query: 121 HF-------HQIPPSRDSPPSLFS------------VDGDGGA------------ELPPF 180
           +        HQ       P    S            VD   G             +LPPF
Sbjct: 446 NLFFNPTECHQFAFQGQFPTETNSWDYSNLYQEQPLVDNMNGTTTTTNNQFYNANDLPPF 505

Query: 181 PPAISSESENYNYNYNYNQGLMELQNSGFEYFDQSPTDI-----GSCFGFDSSSEYVHGP 220
           P  +S +  +  +             +GF     SP +      GS  GFDS+ +YVH P
Sbjct: 506 PSQVSDQLPSSGFEMEQATWGDSTSLAGFSEQRTSPNEFDSAGGGSYLGFDST-QYVHSP 565

[Close]
BLAST of Cp4.1LG01g19260 vs. TrEMBL
Match: R0HAG6_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002480mg PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-29
Identity = 106/231 (45.89%), Postives = 132/231 (57.14%), Query Frame = 1 

Query: 1   MSPSPSKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60
           M+ + SK K+KQ++        RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAEEAA
Sbjct: 1   MNTTSSKSKKKQEEAGT-----RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAA 60

Query: 61  VAYDCAARSLRGSLARTNFLYSDSLPP------------PPPPPSAALPPNQAPLLLPTP 120
           +AYD AARS+RG+ ARTNF+YSD +PP            PPPPP A  PP+  P+     
Sbjct: 61  LAYDRAARSMRGTRARTNFVYSD-MPPSSSVTSIVSPDDPPPPPPAPAPPSDDPV---DY 120

Query: 121 PPHFHQIPPSRDSP---PSLFSVDG--DGGAELPPFPPAISSESENYNYNYNYNQGLMEL 180
              F+Q   S DSP   P    VD    GG++         + S +Y Y+ N +  L  L
Sbjct: 121 MMMFNQY-SSTDSPMLQPHCDQVDSYMFGGSQ---------ASSTSYCYSNNSSNELPPL 180

Query: 181 QNSGFEYFDQSPTDI-GSCF--------GFDSSSEYVHGPIFGSMPAVSDA 206
                      P+D+  SC+        G D S+EYVH P+F  MP VSD+
Sbjct: 181 -----------PSDLSNSCYNQPQWTWSGDDYSAEYVHSPMFSRMPPVSDS 201

[Close]
BLAST of Cp4.1LG01g19260 vs. TrEMBL
Match: A0A059AQP3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01576 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-29
Identity = 111/254 (43.70%), Postives = 132/254 (51.97%), Query Frame = 1 

Query: 2   SPSPSKPKRKQQQPPPETTPH---RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEE 61
           SPS S    K+Q P  E++     RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEE
Sbjct: 3   SPSSSSKGNKKQPPAGESSAAGGGRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEE 62

Query: 62  AAVAYDCAARSLRGSLARTNFLYSD--------SLPPPPPPPSAALPP---NQAPLLLPT 121
           AA+AYD AARS+RGS ARTNF+YSD        S+  P         P   N AP   P 
Sbjct: 63  AALAYDRAARSMRGSRARTNFVYSDLPAGSSVTSILSPDEAQQQNFSPIFANSAPRPDPA 122

Query: 122 PPPHFHQIPPSRDSPPSLFSVDGD--------GGA---------ELPPFPPAIS-----S 181
           P         S  S  + +S   D        GGA         ELPP P  +S     S
Sbjct: 123 PQLDAGGYAESAWSTSAYYSQQADAAPYGGGGGGAYSQCHYDNVELPPLPSDMSGYSGYS 182

Query: 182 ESENYNYNYNYNQGLMELQNSGFEYFDQSPTD-IGSCFGFDSSSEYVHGPIFGSMPAVSD 219
            S+  +Y+Y    G     N   ++ D +     G  FGFDS+ EYVH P+F  MP VSD
Sbjct: 183 GSDTSSYSY----GDTVPSNCYSDFHDPAAASGNGPSFGFDSTEEYVHSPLFSRMPPVSD 242

[Close]
BLAST of Cp4.1LG01g19260 vs. TrEMBL
Match: V4LG01_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015796mg PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-29
Identity = 103/230 (44.78%), Postives = 124/230 (53.91%), Query Frame = 1 

Query: 6   SKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAVAYDC 65
           SK K+KQ     E +  RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAEEAA+AYD 
Sbjct: 4   SKSKKKQ-----EDSGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDR 63

Query: 66  AARSLRGSLARTNFLYSDSLP------------PPPPPPSAALPP------------NQ- 125
           AARS+RG+ ARTNF+YSD  P            PPPPPP AA PP            NQ 
Sbjct: 64  AARSMRGTRARTNFVYSDMPPSSSVTSIRSPDDPPPPPPPAATPPCSNDPVDYMMMFNQY 123

Query: 126 APLLLPTPPPHFHQIPPSRDSPPSLF----SVDGDGGAELPPFPPAISSESENYNYNYNY 185
           +    P PP +  Q+  S      +F    S   +  +ELPP P  +SS          Y
Sbjct: 124 SSTDSPMPPLNSDQMDSS-----YMFGGSPSCYSNSSSELPPLPSDLSSSC--------Y 183

Query: 186 NQGLMELQN-SGFEYFDQSPTDIGSCFGFDSSSEYVHGPIFGSMPAVSDA 206
           +Q    +++ S   YF+                EYVH P+F  MP VSD+
Sbjct: 184 SQQSWSVEDYSSATYFE---------------GEYVHSPMFSRMPPVSDS 200

[Close]
BLAST of Cp4.1LG01g19260 vs. TAIR10
Match: AT5G13910.1 (AT5G13910.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-32
Identity = 96/214 (44.86%), Postives = 121/214 (56.54%), Query Frame = 1 

Query: 1   MSPSPSKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60
           M+ + SK K+KQ     +    RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAEEAA
Sbjct: 1   MNTTSSKSKKKQD----DQVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAA 60

Query: 61  VAYDCAARSLRGSLARTNFLYSDSLPPPPPPPSAALPPNQAPLLLPTPPPHFHQIPPSRD 120
           +AYD AARS+RG+ ARTNF+YSD +PP     S   P +  P   P PPP     PPS D
Sbjct: 61  LAYDRAARSMRGTRARTNFVYSD-MPPSSSVTSIVSPDDPPP---PPPPP----APPSND 120

Query: 121 SPPSLFSVDGDGGAELPPFPPAISSESENYNYNYNYNQGLMELQNSGFEYFDQSPTDI-G 180
               +   +     + P   P    + ++Y +  + +       N         P+D+  
Sbjct: 121 PVDYMMMFNQYSSTDSPMLQPH-CDQVDSYMFGGSQSSNSYCYSNDSSNELPPLPSDLSN 180

Query: 181 SCF--------GFDSSSEYVHGPIFGSMPAVSDA 206
           SC+        G D SSEYVH P+F  MP VSD+
Sbjct: 181 SCYSQPQWTWTGDDYSSEYVHSPMFSRMPPVSDS 201

[Close]
BLAST of Cp4.1LG01g19260 vs. TAIR10
Match: AT1G24590.1 (AT1G24590.1 DORNROSCHEN-like)

HSP 1 Score: 106.7 bits (265), Expect = 1.9e-23
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 

Query: 23  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAVAYDCAARSLRGSLARTNFLY 82
           R+ GVRRRPWGRYAAEIRDP +KER WLGTFDTAEEAA AYDCAAR++RG  ARTNF+Y
Sbjct: 57  RYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVY 115

[Close]
BLAST of Cp4.1LG01g19260 vs. TAIR10
Match: AT1G12890.1 (AT1G12890.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-23
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 1 

Query: 1  MSPSPSKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60
          M  S +K K K+++   E    ++LGVRRRPWGRYAAEIR+P TKERHWLGTFDTAEEAA
Sbjct: 1  MLKSSNKRKSKEEKKLQEG---KYLGVRRRPWGRYAAEIRNPFTKERHWLGTFDTAEEAA 60

Query: 61 VAYDCAARSLRGSLARTNFLYSDS 85
           AYD AARS+ GSLA TNF Y+++
Sbjct: 61 FAYDVAARSISGSLATTNFFYTEN 81

[Close]
BLAST of Cp4.1LG01g19260 vs. TAIR10
Match: AT5G18560.1 (AT5G18560.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-22
Identity = 59/100 (59.00%), Postives = 67/100 (67.00%), Query Frame = 1 

Query: 18  ETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAVAYDCAARSLRGSLART 77
           +  P RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTA EAA+AYD AA S+RG+ ART
Sbjct: 49  QAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMRGTQART 108

Query: 78  NFLYSDS-----LPPPPPPPSAALPPNQAPLLLPTPPPHF 113
           NF+Y+ +     L  P        P N     LP   P F
Sbjct: 109 NFVYTPTDVHTILTNPNLHSLIVSPYNNNQSFLPNSSPQF 148

[Close]
BLAST of Cp4.1LG01g19260 vs. TAIR10
Match: AT1G28160.1 (AT1G28160.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-21
Identity = 79/197 (40.10%), Postives = 106/197 (53.81%), Query Frame = 1 

Query: 2   SPSPSKPKRKQQQPPPETTPH----RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE 61
           S S    ++KQQQP P+   H    +++GVRRRPWGRYAAEIR+P+TKER+WLGTFDTAE
Sbjct: 13  SRSKKSHRQKQQQPQPQPQQHIEEIKYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAE 72

Query: 62  EAAVAYDCAARSLRGSLARTNFLYSDSLPPPPPPPSAALPPNQAPLL--LPTPPPHFHQI 121
           EAA+AYD AARS+RG  ARTNF+YSD +P      S   P      +  L  PP      
Sbjct: 73  EAALAYDRAARSIRGLTARTNFVYSD-MPRGSSVTSFVSPDESQRFISELFNPPSQLEAT 132

Query: 122 PPSRDSPPSLFSVDGDGGAELPPFPPAISSESENYN-YNYNYNQGLMELQ------NSGF 181
             + ++  +L+S                S+ ++N N   ++YN    E +       S  
Sbjct: 133 NSNNNNNNNLYS----------------STNNQNQNSIEFSYNGWPQEAECGYQSITSNA 192

Query: 182 EYFDQS--PTDIGSCFG 184
           E+ D    P    +CFG
Sbjct: 193 EHCDHELPPLPPSTCFG 192

[Close]
BLAST of Cp4.1LG01g19260 vs. NCBI nr
Match: gi|449467369|ref|XP_004151396.1| (PREDICTED: ethylene-responsive transcription factor LEP-like [Cucumis sativus])

HSP 1 Score: 299.7 bits (766), Expect = 4.3e-78
Identity = 163/228 (71.49%), Postives = 178/228 (78.07%), Query Frame = 1 

Query: 1   MSPSPSKPKRKQQQPPP-ETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEA 60
           MSPSPSKPKRK   PPP E+TPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE+A
Sbjct: 1   MSPSPSKPKRKHHPPPPAESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDA 60

Query: 61  AVAYDCAARSLRGSLARTNFLYSDSLPPPPPPPSAAL-----PPNQAPLLLPTPPPHFHQ 120
           A+AYD AARSLRGSLARTNFLYSDS PPPPP  SA++     PP   PLL PTPP   HQ
Sbjct: 61  AIAYDRAARSLRGSLARTNFLYSDSPPPPPPLYSASIHHPNQPPLFLPLLPPTPPSLLHQ 120

Query: 121 IPPSRDSPPSLFSVDGDGGAELPPFPPAISSESENYNYNYNYNQGLMELQNSGFEYFDQS 180
            PP+ DS   + S D D  AELPPFPPAISSES + +YN   N G+ME QN GFE FDQS
Sbjct: 121 FPPAGDSLSGIISGDYDASAELPPFPPAISSESVDCDYN---NYGVMESQNVGFECFDQS 180

Query: 181 PTDIGSCFGFDSSSEYVHGPIFGSMPAVSDAGAGEFLSPAANFYFPQS 223
              IGSC GFDSSS+Y++ P+ GSMP VSD GAG+F SPA NFY PQS
Sbjct: 181 SIGIGSCLGFDSSSDYIYNPMLGSMPTVSDVGAGDFESPAGNFYLPQS 225

[Close]
BLAST of Cp4.1LG01g19260 vs. NCBI nr
Match: gi|659074565|ref|XP_008437672.1| (PREDICTED: ethylene-responsive transcription factor LEP [Cucumis melo])

HSP 1 Score: 289.3 bits (739), Expect = 5.8e-75
Identity = 156/223 (69.96%), Postives = 169/223 (75.78%), Query Frame = 1 

Query: 5   PSKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAVAYD 64
           P  PK      P E TPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA+AYD
Sbjct: 5   PQNPKESTTPAPAEPTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAIAYD 64

Query: 65  CAARSLRGSLARTNFLYSDSLPPPPPPPSAALPPNQAPLLL----PTPPPHFHQIPPSRD 124
            AARSLRGSLARTNFLYSDS PPPPPP SA++ P+Q PL L    P PPP FHQ PP+ D
Sbjct: 65  RAARSLRGSLARTNFLYSDSPPPPPPPYSASIHPSQPPLFLPLLPPPPPPLFHQFPPAGD 124

Query: 125 SPPSLFSVDGDG-GAELPPFPPAISSESENYNYNYNYNQGLMELQNSGFEYFDQSPTDIG 184
           SP  +   D DG  AELPPFPPAISSESEN +YN   N G ME QN GFE FDQS   +G
Sbjct: 125 SPSGIIYGDYDGSSAELPPFPPAISSESENCDYN---NYGAMESQNVGFECFDQSSIGMG 184

Query: 185 SCFGFDSSSEYVHGPIFGSMPAVSDAGAGEFLSPAANFYFPQS 223
           SC GFDSS +Y++ P+ GSM  VSDAG G+  SPAANFY PQS
Sbjct: 185 SCLGFDSSGDYMYNPMLGSMATVSDAGTGDLQSPAANFYLPQS 224

[Close]
BLAST of Cp4.1LG01g19260 vs. NCBI nr
Match: gi|296082248|emb|CBI21253.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 151.4 bits (381), Expect = 1.9e-33
Identity = 102/224 (45.54%), Postives = 134/224 (59.82%), Query Frame = 1 

Query: 1   MSPSPSKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60
           M+PS SK K+KQ Q   + T  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA
Sbjct: 1   MNPSTSKSKKKQTQQ--QETSGRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60

Query: 61  VAYDCAARSLRGSLARTNFLYSDSLPPPPPPPSAALPPNQAPLLLPTPPPHFHQIPPSRD 120
           +AYD AARS+RGS ARTNF+YSD   PP    ++ + P+++   LP    HF  +  + +
Sbjct: 61  LAYDRAARSMRGSRARTNFVYSDM--PPGSSVTSIISPDES---LPDFSSHFPLVD-NMN 120

Query: 121 SPPSLFSVDGDGGAELPPFPPAISSESENYNYNYNYNQGLMELQNSGFEYFDQSPTDI-- 180
              +  +       +LPPFP  +S +  +  +             +GF     SP +   
Sbjct: 121 GTTTTTNNQFYNANDLPPFPSQVSDQLPSSGFEMEQATWGDSTSLAGFSEQRTSPNEFDS 180

Query: 181 ---GSCFGFDSSSEYVHGPIFGSMPAVSDAGAGEFLSPAANFYF 220
              GS  GFDS+ +YVH P+FG MP VSD     F   +++++F
Sbjct: 181 AGGGSYLGFDST-QYVHSPLFGRMPPVSDTPPDGFDLGSSSYFF 215

[Close]
BLAST of Cp4.1LG01g19260 vs. NCBI nr
Match: gi|147862201|emb|CAN80471.1| (hypothetical protein VITISV_025283 [Vitis vinifera])

HSP 1 Score: 143.7 bits (361), Expect = 4.0e-31
Identity = 109/265 (41.13%), Postives = 137/265 (51.70%), Query Frame = 1 

Query: 1   MSPSPSKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60
           M+PS SK K+KQ Q   + T  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA
Sbjct: 326 MNPSTSKSKKKQTQQ--QETSGRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 385

Query: 61  VAYDCAARSLRGSLARTNFLYSDSLPPPPPPPSAALPPNQA----------PLLLPTPPP 120
           +AYD AARS+RGS ARTNF+YSD   PP    ++ + P+++          P   P P P
Sbjct: 386 LAYDRAARSMRGSRARTNFVYSDM--PPGSSVTSIISPDESLPDFSSHFVPPTTQPNPNP 445

Query: 121 HF-------HQIPPSRDSPPSLFS------------VDGDGGA------------ELPPF 180
           +        HQ       P    S            VD   G             +LPPF
Sbjct: 446 NLFFNPTECHQFAFQGQFPTETNSWDYSNLYQEQPLVDNMNGTTTTTNNQFYNANDLPPF 505

Query: 181 PPAISSESENYNYNYNYNQGLMELQNSGFEYFDQSPTDI-----GSCFGFDSSSEYVHGP 220
           P  +S +  +  +             +GF     SP +      GS  GFDS+ +YVH P
Sbjct: 506 PSQVSDQLPSSGFEMEQATWGDSTSLAGFSEQRTSPNEFDSAGGGSYLGFDST-QYVHSP 565

[Close]
BLAST of Cp4.1LG01g19260 vs. NCBI nr
Match: gi|225451649|ref|XP_002276221.1| (PREDICTED: ethylene-responsive transcription factor LEP [Vitis vinifera])

HSP 1 Score: 143.7 bits (361), Expect = 4.0e-31
Identity = 109/265 (41.13%), Postives = 137/265 (51.70%), Query Frame = 1 

Query: 1   MSPSPSKPKRKQQQPPPETTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60
           M+PS SK K+KQ Q   + T  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA
Sbjct: 1   MNPSTSKSKKKQTQQ--QETSGRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAA 60

Query: 61  VAYDCAARSLRGSLARTNFLYSDSLPPPPPPPSAALPPNQA----------PLLLPTPPP 120
           +AYD AARS+RGS ARTNF+YSD   PP    ++ + P+++          P   P P P
Sbjct: 61  LAYDRAARSMRGSRARTNFVYSDM--PPGSSVTSIISPDESLPDFSSHFVPPTTQPNPNP 120

Query: 121 HF-------HQIPPSRDSPPSLFS------------VDGDGGA------------ELPPF 180
           +        HQ       P    S            VD   G             +LPPF
Sbjct: 121 NLFFNPTECHQFAFQGQFPTETNSWDYSNLYQEQPLVDNMNGTTTTTNNQFYNANDLPPF 180

Query: 181 PPAISSESENYNYNYNYNQGLMELQNSGFEYFDQSPTDI-----GSCFGFDSSSEYVHGP 220
           P  +S +  +  +             +GF     SP +      GS  GFDS+ +YVH P
Sbjct: 181 PSQVSDQLPSSGFEMEQATWGDSTSLAGFSEQRTSPNEFDSAGGGSYLGFDST-QYVHSP 240

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g19260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LEP_ARATH2.3e-3144.86Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2... [more]
ESR2_ARATH3.4e-2281.36Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE... [more]
ERF88_ARATH4.4e-2265.48Ethylene-responsive transcription factor ERF088 OS=Arabidopsis thaliana GN=ERF08... [more]
ERF86_ARATH3.7e-2159.00Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF08... [more]
ERF87_ARATH3.1e-2040.10Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF08... [more]
BLAST of Cp4.1LG01g19260 vs. TrEMBL
Match NameE-valueIdentityDescription
F6H417_VITVI2.8e-3141.13Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g00860 PE=4 SV=... [more]
A5AUS3_VITVI2.8e-3141.13Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025283 PE=4 SV=1[more]
R0HAG6_9BRAS2.6e-2945.89Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002480mg PE=4 SV=1[more]
A0A059AQP3_EUCGR2.6e-2943.70Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01576 PE=4 SV=1[more]
V4LG01_EUTSA2.6e-2944.78Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015796mg PE=4 SV=1[more]
BLAST of Cp4.1LG01g19260 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G13910.11.3e-3244.86 Integrase-type DNA-binding superfamily protein[more]
AT1G24590.11.9e-2381.36 DORNROSCHEN-like[more]
AT1G12890.12.5e-2365.48 Integrase-type DNA-binding superfamily protein[more]
AT5G18560.12.1e-2259.00 Integrase-type DNA-binding superfamily protein[more]
AT1G28160.11.8e-2140.10 Integrase-type DNA-binding superfamily protein[more]
BLAST of Cp4.1LG01g19260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449467369|ref|XP_004151396.1|4.3e-7871.49PREDICTED: ethylene-responsive transcription factor LEP-like [Cucumis sativus][more]
gi|659074565|ref|XP_008437672.1|5.8e-7569.96PREDICTED: ethylene-responsive transcription factor LEP [Cucumis melo][more]
gi|296082248|emb|CBI21253.3|1.9e-3345.54unnamed protein product [Vitis vinifera][more]
gi|147862201|emb|CAN80471.1|4.0e-3141.13hypothetical protein VITISV_025283 [Vitis vinifera][more]
gi|225451649|ref|XP_002276221.1|4.0e-3141.13PREDICTED: ethylene-responsive transcription factor LEP [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR016177DNA-bd_dom_sf
IPR001471AP2/ERF_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0010030 positive regulation of seed germination
biological_process GO:0009739 response to gibberellin
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g19260.1Cp4.1LG01g19260.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 46..62
score: 3.4E-8coord: 24..35
score: 3.
IPR001471AP2/ERF domainGENE3DG3DSA:3.30.730.10coord: 24..80
score: 2.8
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 26..72
score: 2.7
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 23..86
score: 4.7
IPR001471AP2/ERF domainPROFILEPS51032AP2_ERFcoord: 23..80
score: 20
IPR016177DNA-binding domainunknownSSF54171DNA-binding domaincoord: 24..81
score: 5.17
NoneNo IPR availablePANTHERPTHR31677FAMILY NOT NAMEDcoord: 1..218
score: 3.7
NoneNo IPR availablePANTHERPTHR31677:SF5ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEPcoord: 1..218
score: 3.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g19260CmaCh04G022290Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g19260CmoCh04G023280Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g19260Cla009063Watermelon (97103) v1cpewmB441
Cp4.1LG01g19260CsaUNG003730Cucumber (Chinese Long) v2cpecuB383
Cp4.1LG01g19260MELO3C005088Melon (DHL92) v3.5.1cpemeB359
Cp4.1LG01g19260ClCG01G007910Watermelon (Charleston Gray)cpewcgB370
Cp4.1LG01g19260CSPIUnG00170Wild cucumber (PI 183967)cpecpiB473
Cp4.1LG01g19260Lsi09G008380Bottle gourd (USVL1VR-Ls)cpelsiB311
Cp4.1LG01g19260MELO3C005088.2Melon (DHL92) v3.6.1cpemedB419
Cp4.1LG01g19260CsaV3_5G021950Cucumber (Chinese Long) v3cpecucB0549
Cp4.1LG01g19260Bhi12G000936Wax gourdcpewgoB0493
Cp4.1LG01g19260CsGy5G013880Cucumber (Gy14) v2cgybcpeB653
Cp4.1LG01g19260Carg17759Silver-seed gourdcarcpeB0670
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g19260Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g19260Cucurbita maxima (Rimu)cmacpeB318
Cp4.1LG01g19260Cucurbita moschata (Rifu)cmocpeB280
Cp4.1LG01g19260Silver-seed gourdcarcpeB1158
Cp4.1LG01g19260Wax gourdcpewgoB0490
Cp4.1LG01g19260Wax gourdcpewgoB0491