CsGy5G013880 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G013880
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	ethylene-responsive transcription factor LEP
Location	Chr5 : 18580666 .. 18581352 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCCATCGCCCTCCAAACCCAAAAGAAAGCACCACCCCCCGCCCCCCGCAGAATCTACGCCCCACCGTTTCCTCGGAGTCCGTCGACGACCCTGGGGTCGATATGCCGCCGAGATCAGAGATCCTTCCACCAAAGAGCGTCATTGGCTCGGCACCTTCGACACCGCCGAGGACGCCGCCATTGCCTACGACCGTGCTGCCCGCTCCCTCCGCGGCTCCCTCGCTCGCACCAACTTCCTCTACTCCGACTCTCCGCCCCCTCCTCCCCCACTCTACTCTGCCTCCATTCACCACCCCAATCAGCCTCCTCTGTTTCTTCCTCTGCTTCCACCCACTCCTCCCTCTCTTCTCCACCAATTCCCCCCCGCCGGAGACTCCCTTTCCGGAATCATCTCCGGCGATTACGACGCCAGCGCTGAGCTTCCGCCATTTCCTCCGGCGATTTCCTCGGAATCGGTGGATTGTGATTATAATAATTACGGTGTGATGGAATCGCAGAACGTTGGATTTGAATGCTTTGATCAATCATCAATTGGAATCGGGTCGTGTTTGGGATTTGATTCGAGCAGTGATTATATATATAATCCGATGTTGGGTTCGATGCCGACGGTTTCCGACGTCGGCGCCGGTGATTTTGAGTCCCCGGCGGGTAATTTCTATTTGCCTCAGTCTTCAGATTACTGA

mRNA sequence

ATGAGTCCATCGCCCTCCAAACCCAAAAGAAAGCACCACCCCCCGCCCCCCGCAGAATCTACGCCCCACCGTTTCCTCGGAGTCCGTCGACGACCCTGGGGTCGATATGCCGCCGAGATCAGAGATCCTTCCACCAAAGAGCGTCATTGGCTCGGCACCTTCGACACCGCCGAGGACGCCGCCATTGCCTACGACCGTGCTGCCCGCTCCCTCCGCGGCTCCCTCGCTCGCACCAACTTCCTCTACTCCGACTCTCCGCCCCCTCCTCCCCCACTCTACTCTGCCTCCATTCACCACCCCAATCAGCCTCCTCTGTTTCTTCCTCTGCTTCCACCCACTCCTCCCTCTCTTCTCCACCAATTCCCCCCCGCCGGAGACTCCCTTTCCGGAATCATCTCCGGCGATTACGACGCCAGCGCTGAGCTTCCGCCATTTCCTCCGGCGATTTCCTCGGAATCGGTGGATTGTGATTATAATAATTACGGTGTGATGGAATCGCAGAACGTTGGATTTGAATGCTTTGATCAATCATCAATTGGAATCGGGTCGTGTTTGGGATTTGATTCGAGCAGTGATTATATATATAATCCGATGTTGGGTTCGATGCCGACGGTTTCCGACGTCGGCGCCGGTGATTTTGAGTCCCCGGCGGGTAATTTCTATTTGCCTCAGTCTTCAGATTACTGA

Coding sequence (CDS)

ATGAGTCCATCGCCCTCCAAACCCAAAAGAAAGCACCACCCCCCGCCCCCCGCAGAATCTACGCCCCACCGTTTCCTCGGAGTCCGTCGACGACCCTGGGGTCGATATGCCGCCGAGATCAGAGATCCTTCCACCAAAGAGCGTCATTGGCTCGGCACCTTCGACACCGCCGAGGACGCCGCCATTGCCTACGACCGTGCTGCCCGCTCCCTCCGCGGCTCCCTCGCTCGCACCAACTTCCTCTACTCCGACTCTCCGCCCCCTCCTCCCCCACTCTACTCTGCCTCCATTCACCACCCCAATCAGCCTCCTCTGTTTCTTCCTCTGCTTCCACCCACTCCTCCCTCTCTTCTCCACCAATTCCCCCCCGCCGGAGACTCCCTTTCCGGAATCATCTCCGGCGATTACGACGCCAGCGCTGAGCTTCCGCCATTTCCTCCGGCGATTTCCTCGGAATCGGTGGATTGTGATTATAATAATTACGGTGTGATGGAATCGCAGAACGTTGGATTTGAATGCTTTGATCAATCATCAATTGGAATCGGGTCGTGTTTGGGATTTGATTCGAGCAGTGATTATATATATAATCCGATGTTGGGTTCGATGCCGACGGTTTCCGACGTCGGCGCCGGTGATTTTGAGTCCCCGGCGGGTAATTTCTATTTGCCTCAGTCTTCAGATTACTGA

Protein sequence

MSPSPSKPKRKHHPPPPAESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYSDSPPPPPPLYSASIHHPNQPPLFLPLLPPTPPSLLHQFPPAGDSLSGIISGDYDASAELPPFPPAISSESVDCDYNNYGVMESQNVGFECFDQSSIGIGSCLGFDSSSDYIYNPMLGSMPTVSDVGAGDFESPAGNFYLPQSSDY

Homology

[Close]

BLAST of CsGy5G013880 vs. NCBI nr
Match: XP_004151396.1 (PREDICTED: ethylene-responsive transcription factor LEP-like [Cucumis sativus])

HSP 1 Score: 384.4 bits (986), Expect = 2.7e-103
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MSPSPSKPKRXXXXXXXAESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDA 60
           MSPSPSKPKRXXXXXXXAESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDA
Sbjct: 1   MSPSPSKPKRXXXXXXXAESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDA 60

Query: 61  AIAYDRAARSLRGSLARTNFLYSDXXXXXXXXXXXXXXXXXXXXXFLPLXXXXXXXLLHQ 120
           AIAYDRAARSLRGSLARTNFLYSDXXXXXXXXXXXXXXXXXXXXXFLPLXXXXXXXLLHQ
Sbjct: 61  AIAYDRAARSLRGSLARTNFLYSDXXXXXXXXXXXXXXXXXXXXXFLPLXXXXXXXLLHQ 120

Query: 121 FPPAGDSLSGIISGDYDASAELPPFPPAISSESVDCDYNNYGVMESQNVGFECFDQSSIG 180
           FPPAGDSLSGIISGDYDASAELPPFPPAISSESVDCDYNNYGVMESQNVGFECFDQSSIG
Sbjct: 121 FPPAGDSLSGIISGDYDASAELPPFPPAISSESVDCDYNNYGVMESQNVGFECFDQSSIG 180

Query: 181 IGSCLGFDSSSDYIYNPMLGSMPTVSDVGAGDFESPAGNFYLPQSSDY 229
           IGSCLGFDSSSDYIYNPMLGSMPTVSDVGAGDFESPAGNFYLPQSSDY
Sbjct: 181 IGSCLGFDSSSDYIYNPMLGSMPTVSDVGAGDFESPAGNFYLPQSSDY 228

[Close]

BLAST of CsGy5G013880 vs. NCBI nr
Match: XP_008437672.1 (PREDICTED: ethylene-responsive transcription factor LEP [Cucumis melo])

HSP 1 Score: 308.9 bits (790), Expect = 1.4e-80
Identity = 188/225 (83.56%), Postives = 195/225 (86.67%), Query Frame = 0


Query: 5   PSKPKRXXXXXXXAESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAY 64
           P  PK        AE TPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE+AAIAY
Sbjct: 5   PQNPKE-STTPAPAEPTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAIAY 64

Query: 65  DRAARSLRGSLARTNFLYSDXXXXXXXXXXXXXXXXXXXXXFLPLXXXXXXXLLHQFPPA 124
           DRAARSLRGSLARTNFLYSD XXXXXXXXXXXXXXXXXXXX    XXXXXXX   QFPPA
Sbjct: 65  DRAARSLRGSLARTNFLYSD-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFPPA 124

Query: 125 GDSLSGIISGDYD-ASAELPPFPPAISSESVDCDYNNYGVMESQNVGFECFDQSSIGIGS 184
           GDS SGII GDYD +SAELPPFPPAISSES +CDYNNYG MESQNVGFECFDQSSIG+GS
Sbjct: 125 GDSPSGIIYGDYDGSSAELPPFPPAISSESENCDYNNYGAMESQNVGFECFDQSSIGMGS 184

Query: 185 CLGFDSSSDYIYNPMLGSMPTVSDVGAGDFESPAGNFYLPQSSDY 229
           CLGFDSS DY+YNPMLGSM TVSD G GD +SPA NFYLPQSS+Y
Sbjct: 185 CLGFDSSGDYMYNPMLGSMATVSDAGTGDLQSPAANFYLPQSSEY 227

[Close]

BLAST of CsGy5G013880 vs. NCBI nr
Match: XP_023541749.1 (ethylene-responsive transcription factor LEP-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.3 bits (599), Expect = 2.0e-58
Identity = 159/228 (69.74%), Postives = 170/228 (74.56%), Query Frame = 0


Query: 1   MSPSPSKPKRXXXXXXXAESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDA 60
           MSPSPSKPK XXXXXXX  +TPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE+A
Sbjct: 1   MSPSPSKPK-XXXXXXXXXTTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEA 60

Query: 61  AIAYDRAARSLRGSLARTNFLYSDXXXXXXXXXXXXXXXXXXXXXFLPLXXXXXXXLLHQ 120
           A+AYD AARSLRGSLARTNFLYSD       XXXXXXXXXXXXXX    XXXXXXX    
Sbjct: 61  AVAYDCAARSLRGSLARTNFLYSD-----SLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 FPPAGDSLSGIISGDYDASAELPPFPPAIS---SESVDCDYNNYGVMESQNVGFECFDQS 180
            PP+ DS   + S D D  AELPPFPPAIS               +ME QN GFE FDQS
Sbjct: 121 IPPSRDSPPSLFSVDGDGGAELPPFPPAISXXXXXXXXXXXXXXXLMELQNSGFEYFDQS 180

Query: 181 SIGIGSCLGFDSSSDYIYNPMLGSMPTVSDVGAGDFESPAGNFYLPQS 226
              IGSC GFDSSS+Y++ P+ GSMP VSD GAG+F SPA NFY PQS
Sbjct: 181 PTDIGSCFGFDSSSEYVHGPIFGSMPAVSDAGAGEFLSPAANFYFPQS 222

[Close]

BLAST of CsGy5G013880 vs. NCBI nr
Match: XP_022963669.1 (ethylene-responsive transcription factor LEP-like [Cucurbita moschata])

HSP 1 Score: 229.9 bits (585), Expect = 8.4e-57
Identity = 157/232 (67.67%), Postives = 169/232 (72.84%), Query Frame = 0


Query: 1   MSPSPSKPKRXXXXXXXAESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDA 60
           MSPSPSKPK XXXXXXX  +TPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE+A
Sbjct: 1   MSPSPSKPK-XXXXXXXXXTTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEA 60

Query: 61  AIAYDRAARSLRGSLARTNFLYSDXXXXXXXXXXXXXXXXXXXXXFLPLXXXXXXXLLHQ 120
           A+AYD AARSLRGSLARTNFLYSD       XXXXXXXXXXXXXX    XXXXXXX    
Sbjct: 61  AVAYDCAARSLRGSLARTNFLYSD-----SLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 FPPAGDSLSGIISGDYDASAELPPFPPAIS-------SESVDCDYNNYGVMESQNVGFEC 180
            PP+ DS   + S D D  AELPPFPPAIS                   +ME QN GFE 
Sbjct: 121 IPPSRDSPPSLFSVDGDGGAELPPFPPAISXXXXXXXXXXXXXXXXXXXLMELQNSGFEY 180

Query: 181 FDQSSIGIGSCLGFDSSSDYIYNPMLGSMPTVSDVGAGDFESPAGNFYLPQS 226
           F+QS   IGSC GFDSSS+Y++ P+  SMP VSD GAG+F SPA NFY PQS
Sbjct: 181 FNQSPTEIGSCFGFDSSSEYVHGPIFSSMPAVSDAGAGEFPSPAANFYFPQS 226

[Close]

BLAST of CsGy5G013880 vs. NCBI nr
Match: XP_022990620.1 (ethylene-responsive transcription factor LEP-like [Cucurbita maxima])

HSP 1 Score: 229.2 bits (583), Expect = 1.4e-56
Identity = 157/228 (68.86%), Postives = 167/228 (73.25%), Query Frame = 0


Query: 1   MSPSPSKPKRXXXXXXXAESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDA 60
           MSPSPSKP  XXXXXXX   + HRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE+A
Sbjct: 1   MSPSPSKPXXXXXXXXXXXXS-HRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEA 60

Query: 61  AIAYDRAARSLRGSLARTNFLYSDXXXXXXXXXXXXXXXXXXXXXFLPLXXXXXXXLLHQ 120
           A+AYD AARSLRGSLARTNFLYSD       XXXXXXXXXXXXXX    XXXXXXX    
Sbjct: 61  AVAYDCAARSLRGSLARTNFLYSD-----SLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 FPPAGDSLSGIISGDYDASAELPPFPPAIS---SESVDCDYNNYGVMESQNVGFECFDQS 180
            PP+ DS   + S D D  AELPPFPPAIS               +ME QN GFE FDQS
Sbjct: 121 IPPSRDSPPSLFSVDGDGGAELPPFPPAISXXXXXXXXXXXXXXXLMELQNSGFEYFDQS 180

Query: 181 SIGIGSCLGFDSSSDYIYNPMLGSMPTVSDVGAGDFESPAGNFYLPQS 226
           S  IGSC GFDSSS+Y++ P+  SMP VSD GAGDF SPA NFY PQS
Sbjct: 181 STEIGSCFGFDSSSEYVHGPIFSSMPAVSDAGAGDFPSPAANFYFPQS 222

[Close]

BLAST of CsGy5G013880 vs. TAIR10
Match: AT5G13910.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 124.8 bits (312), Expect = 6.9e-29
Identity = 105/205 (51.22%), Postives = 123/205 (60.00%), Query Frame = 0


Query: 24  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYS 83
           RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAE+AA+AYDRAARS+RG+ ARTNF+YS
Sbjct: 19  RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRGTRARTNFVYS 78

Query: 84  DXXXXXXXXXXXXXXXXXXXXXFLPLXXXXXXXLLHQF-----------PPAGDSLSGII 143
           D  XXXXXXXXXXXXXXXXXXX    XXXXXX  +  F            P  D +   +
Sbjct: 79  DMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYMMMFNQYSSTDSPMLQPHCDQVDSYM 138

Query: 144 SG----------DYDASAELPPFPPAISSESVDCDYNNYGVMESQNVGFECFDQSSIGIG 203
            G            D+S ELPP P  +S+                     C+ Q      
Sbjct: 139 FGGSQSSNSYCYSNDSSNELPPLPSDLSN--------------------SCYSQPQ---W 198

Query: 204 SCLGFDSSSDYIYNPMLGSMPTVSD 208
           +  G D SS+Y+++PM   MP VSD
Sbjct: 199 TWTGDDYSSEYVHSPMFSRMPPVSD 200

[Close]

BLAST of CsGy5G013880 vs. TAIR10
Match: AT5G18560.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 114.4 bits (285), Expect = 9.3e-26
Identity = 51/65 (78.46%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 19  ESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLART 78
           ++ P RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTA +AA+AYDRAA S+RG+ ART
Sbjct: 49  QAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMRGTQART 108

Query: 79  NFLYS 84
           NF+Y+
Sbjct: 109 NFVYT 113

[Close]

BLAST of CsGy5G013880 vs. TAIR10
Match: AT1G28160.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 111.3 bits (277), Expect = 7.9e-25
Identity = 49/61 (80.33%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 24 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYS 83
          +++GVRRRPWGRYAAEIR+P+TKER+WLGTFDTAE+AA+AYDRAARS+RG  ARTNF+YS
Sbjct: 38 KYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNFVYS 97

Query: 84 D 85
          D
Sbjct: 98 D 98

[Close]

BLAST of CsGy5G013880 vs. TAIR10
Match: AT1G12890.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-23
Identity = 48/61 (78.69%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 24 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYS 83
          ++LGVRRRPWGRYAAEIR+P TKERHWLGTFDTAE+AA AYD AARS+ GSLA TNF Y+
Sbjct: 20 KYLGVRRRPWGRYAAEIRNPFTKERHWLGTFDTAEEAAFAYDVAARSISGSLATTNFFYT 79

Query: 84 D 85
          +
Sbjct: 80 E 80

[Close]

BLAST of CsGy5G013880 vs. TAIR10
Match: AT1G12980.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 101.7 bits (252), Expect = 6.2e-22
Identity = 48/65 (73.85%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 18  AESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLAR 77
           A S+  R+ GVRRRPWGRYAAEIRDP +KER WLGTFDTAE AA AYD AAR+ RG+ AR
Sbjct: 50  AGSSTTRYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKAR 109

Query: 78  TNFLY 83
           TNF Y
Sbjct: 110 TNFTY 114

[Close]

BLAST of CsGy5G013880 vs. Swiss-Prot
Match: sp|Q9M644|LEP_ARATH (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana OX=3702 GN=LEP PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-27
Identity = 105/205 (51.22%), Postives = 123/205 (60.00%), Query Frame = 0


Query: 24  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYS 83
           RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAE+AA+AYDRAARS+RG+ ARTNF+YS
Sbjct: 19  RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRGTRARTNFVYS 78

Query: 84  DXXXXXXXXXXXXXXXXXXXXXFLPLXXXXXXXLLHQF-----------PPAGDSLSGII 143
           D  XXXXXXXXXXXXXXXXXXX    XXXXXX  +  F            P  D +   +
Sbjct: 79  DMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYMMMFNQYSSTDSPMLQPHCDQVDSYM 138

Query: 144 SG----------DYDASAELPPFPPAISSESVDCDYNNYGVMESQNVGFECFDQSSIGIG 203
            G            D+S ELPP P  +S+                     C+ Q      
Sbjct: 139 FGGSQSSNSYCYSNDSSNELPPLPSDLSN--------------------SCYSQPQ---W 198

Query: 204 SCLGFDSSSDYIYNPMLGSMPTVSD 208
           +  G D SS+Y+++PM   MP VSD
Sbjct: 199 TWTGDDYSSEYVHSPMFSRMPPVSD 200

[Close]

BLAST of CsGy5G013880 vs. Swiss-Prot
Match: sp|Q6J9Q2|ERF86_ARATH (Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana OX=3702 GN=ERF086 PE=2 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-24
Identity = 51/65 (78.46%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 19  ESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLART 78
           ++ P RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTA +AA+AYDRAA S+RG+ ART
Sbjct: 49  QAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMRGTQART 108

Query: 79  NFLYS 84
           NF+Y+
Sbjct: 109 NFVYT 113

[Close]

BLAST of CsGy5G013880 vs. Swiss-Prot
Match: sp|Q8H3Q1|FZP_ORYSJ (Ethylene-responsive transcription factor FZP OS=Oryza sativa subsp. japonica OX=39947 GN=FZP PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.9e-24
Identity = 50/62 (80.65%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 22  PHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFL 81
           P RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTA++AA+AYDRAA S++G+ ARTNF+
Sbjct: 55  PGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGAQARTNFV 114

Query: 82  YS 84
           Y+
Sbjct: 115 YT 116

[Close]

BLAST of CsGy5G013880 vs. Swiss-Prot
Match: sp|Q9FZ90|ERF87_ARATH (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana OX=3702 GN=ERF087 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-23
Identity = 49/61 (80.33%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 24 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYS 83
          +++GVRRRPWGRYAAEIR+P+TKER+WLGTFDTAE+AA+AYDRAARS+RG  ARTNF+YS
Sbjct: 38 KYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNFVYS 97

Query: 84 D 85
          D
Sbjct: 98 D 98

[Close]

BLAST of CsGy5G013880 vs. Swiss-Prot
Match: sp|Q3E703|ERF88_ARATH (Ethylene-responsive transcription factor ERF088 OS=Arabidopsis thaliana OX=3702 GN=ERF088 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.6e-22
Identity = 48/61 (78.69%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 24 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYS 83
          ++LGVRRRPWGRYAAEIR+P TKERHWLGTFDTAE+AA AYD AARS+ GSLA TNF Y+
Sbjct: 20 KYLGVRRRPWGRYAAEIRNPFTKERHWLGTFDTAEEAAFAYDVAARSISGSLATTNFFYT 79

Query: 84 D 85
          +
Sbjct: 80 E 80

[Close]

BLAST of CsGy5G013880 vs. TrEMBL
Match: tr|A0A1S3AU89|A0A1S3AU89_CUCME (ethylene-responsive transcription factor LEP OS=Cucumis melo OX=3656 GN=LOC103483013 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 9.4e-81
Identity = 188/225 (83.56%), Postives = 195/225 (86.67%), Query Frame = 0


Query: 5   PSKPKRXXXXXXXAESTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAY 64
           P  PK        AE TPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE+AAIAY
Sbjct: 5   PQNPKE-STTPAPAEPTPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAIAY 64

Query: 65  DRAARSLRGSLARTNFLYSDXXXXXXXXXXXXXXXXXXXXXFLPLXXXXXXXLLHQFPPA 124
           DRAARSLRGSLARTNFLYSD XXXXXXXXXXXXXXXXXXXX    XXXXXXX   QFPPA
Sbjct: 65  DRAARSLRGSLARTNFLYSD-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFPPA 124

Query: 125 GDSLSGIISGDYD-ASAELPPFPPAISSESVDCDYNNYGVMESQNVGFECFDQSSIGIGS 184
           GDS SGII GDYD +SAELPPFPPAISSES +CDYNNYG MESQNVGFECFDQSSIG+GS
Sbjct: 125 GDSPSGIIYGDYDGSSAELPPFPPAISSESENCDYNNYGAMESQNVGFECFDQSSIGMGS 184

Query: 185 CLGFDSSSDYIYNPMLGSMPTVSDVGAGDFESPAGNFYLPQSSDY 229
           CLGFDSS DY+YNPMLGSM TVSD G GD +SPA NFYLPQSS+Y
Sbjct: 185 CLGFDSSGDYMYNPMLGSMATVSDAGTGDLQSPAANFYLPQSSEY 227

[Close]

BLAST of CsGy5G013880 vs. TrEMBL
Match: tr|A0A2P6QZY6|A0A2P6QZY6_ROSCH (Putative transcription factor AP2-EREBP family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0428551 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.6e-30
Identity = 115/234 (49.15%), Postives = 134/234 (57.26%), Query Frame = 0


Query: 24  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYS 83
           RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE+AA+AYDRAARS+RGS ARTNF+YS
Sbjct: 43  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYS 102

Query: 84  D---------------------XXXXXXXXXXXXXXXXXXXXXFLPLXXXXXXXLLHQFP 143
           D                          XXXXXXXXXXXXXXXX    XXXX       +P
Sbjct: 103 DMPHGSSVTSIISPDESHRDMSAFFTAXXXXXXXXXXXXXXXXXXXXXXXXTQDPFDAYP 162

Query: 144 PAGDSL------SGIISGDYDAS--AELPPFPPAISSESVDCDYNNYGVMESQNVGFECF 203
            +G S       SG   GD   S   ELPP PP++SS         YG  E     F+ F
Sbjct: 163 FSGGSYGSYGPGSGCAVGDGAGSHDNELPPLPPSVSS-------TGYGPGEVMGSDFDGF 222

Query: 204 DQ-------SSIGIGSCLGFDSSSDYIYNPMLGSMPTVSDVGAGDFESPAGNFY 222
            +        S+  GS +GFDS+    ++P+ GSMP VSD G   F+  + + Y
Sbjct: 223 SEPTTTHGFDSLASGSYMGFDSNEFVQHSPLFGSMPPVSDSGIDGFDLGSSSAY 269

[Close]

BLAST of CsGy5G013880 vs. TrEMBL
Match: tr|M5XK05|M5XK05_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G212700 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.8e-30
Identity = 95/236 (40.25%), Postives = 116/236 (49.15%), Query Frame = 0


Query: 24  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYS 83
           RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE+AA+AYDRAARS+RGS ARTNF+YS
Sbjct: 43  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYS 102

Query: 84  D--XXXXXXXXXXXXXXXXXXXXXFLPLXXXXXXXLLHQ-----------FPPAGDSLSG 143
           D                       F            HQ           +P +G S  G
Sbjct: 103 DMPHGSSVTSIISPDESQHDMSAFFATPLQPQPQTTNHQQSFFTQDPFDAYPYSGGSSGG 162

Query: 144 I-----------------ISGDYDASAELPPFPPAISSESVDCDYNNYGVMES-QNVGFE 203
                                   +  ELPP PP +SS      Y   GVM S  ++G+ 
Sbjct: 163 FGXXXXXXXXXXXXXXXXXXXXXXSHTELPPLPPCVSSTC----YGPDGVMGSDMDMGYF 222

Query: 204 CFDQSSIG-------IGSCLGFDSSSDYIYNPMLGSMPTVSDVGAGDFESPAGNFY 222
            F + +          GS +GFDS+    ++P+ GSMP VSD G   F+  + + Y
Sbjct: 223 GFSEPTTNNGLDPMMSGSYMGFDSNEFVQHSPLFGSMPPVSDAGIDGFDLGSSSAY 274

[Close]

BLAST of CsGy5G013880 vs. TrEMBL
Match: tr|A0A1U7ZQM3|A0A1U7ZQM3_NELNU (ethylene-responsive transcription factor LEP-like OS=Nelumbo nucifera OX=4432 GN=LOC104592717 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.8e-30
Identity = 94/228 (41.23%), Postives = 117/228 (51.32%), Query Frame = 0


Query: 24  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAIAYDRAARSLRGSLARTNFLYS 83
           RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAE+AA+AYDRAARS+RGS ARTNF+YS
Sbjct: 38  RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYS 97

Query: 84  D---XXXXXXXXXXXXXXXXXXXXXFLPLXXXXXXXLLH-------------QFPPAGDS 143
           D                         LP         L+             +F PAGDS
Sbjct: 98  DLPPGSSITSIISPDETQHDLSAALLLPSPQTEPTTQLYFTKDSGTATHFSGEF-PAGDS 157

Query: 144 ----------------LSGIISGDYDASAELPPFPPAISS-----------ESVDCDYNN 203
                           + G+ S  +  S +LPPFP  +SS           ++V  D  N
Sbjct: 158 WVAANVSESISSFAGVVDGLASNQFYDSTDLPPFPSDVSSCNAAASGYDMGQAVWPDTTN 217

Query: 204 Y-GVMESQNVGFECFDQSSIGIGSCLGFDSSSDYIYNPMLGSMPTVSD 208
           Y G  +    GF+       G  SC  FD S++++++P+ G MP VSD
Sbjct: 218 YVGYSDQTMAGFDS------GSSSCFSFD-SNEFVHSPLFGQMPPVSD 257

[Close]

BLAST of CsGy5G013880 vs. TrEMBL
Match: tr|A0A218X6G3|A0A218X6G3_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr019827 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.2e-29
Identity = 104/247 (42.11%), Postives = 131/247 (53.04%), Query Frame = 0


Query: 1   MSPSPSKPKRXXXXXXXAES--TPHRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE 60
           M+PSPSK K+        +S  +  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE
Sbjct: 1   MNPSPSKGKKTKQSSSSGQSPESSGRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAE 60

Query: 61  DAAIAYDRAARSLRGSLARTNFLYSD-------XXXXXXXXXXXXXXXXXXXXXFLPLXX 120
           +AA+AYD AARS+RG  ARTNF+YSD                        XXXX    XX
Sbjct: 61  EAALAYDLAARSMRGPHARTNFVYSDSPAGSSVTSILSPDEAPHYHNASNXXXXXXXXXX 120

Query: 121 XXXXXLLHQFPPAGDSLSGIISGDYDASA-ELPPFPPAISSESVDC-----------DYN 180
           XXXXX        G     +   D  +S+ ELPPFP  +S  S +             + 
Sbjct: 121 XXXXXXXXXXXFQGGFAENVWPADKGSSSYELPPFPSDMSEYSGNAGSGWGHNAEQGTWG 180

Query: 181 NYGVMESQNVGFECFDQSSIGI-----GSCLGFDSSSDYIYNPMLGSMPTVSDVGAGDFE 222
           N G +   +     F  S+ G      GS  GF+SS +Y+++P+   MP VSD G   F 
Sbjct: 181 NTGSLACYHDPSSGFSDSTAGFDSGSGGSYFGFESSGEYVHSPLFSQMPPVSDSGPDGFN 240

The following BLAST results are available for this feature:

BLAST of CsGy5G013880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151396.1	2.7e-103	100.00	PREDICTED: ethylene-responsive transcription factor LEP-like [Cucumis sativus]	[more]
XP_008437672.1	1.4e-80	83.56	PREDICTED: ethylene-responsive transcription factor LEP [Cucumis melo]	[more]
XP_023541749.1	2.0e-58	69.74	ethylene-responsive transcription factor LEP-like [Cucurbita pepo subsp. pepo]	[more]
XP_022963669.1	8.4e-57	67.67	ethylene-responsive transcription factor LEP-like [Cucurbita moschata]	[more]
XP_022990620.1	1.4e-56	68.86	ethylene-responsive transcription factor LEP-like [Cucurbita maxima]	[more]

BLAST of CsGy5G013880 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13910.1	6.9e-29	51.22	Integrase-type DNA-binding superfamily protein	[more]
AT5G18560.1	9.3e-26	78.46	Integrase-type DNA-binding superfamily protein	[more]
AT1G28160.1	7.9e-25	80.33	Integrase-type DNA-binding superfamily protein	[more]
AT1G12890.1	2.5e-23	78.69	Integrase-type DNA-binding superfamily protein	[more]
AT1G12980.1	6.2e-22	73.85	Integrase-type DNA-binding superfamily protein	[more]

BLAST of CsGy5G013880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M644\|LEP_ARATH	1.2e-27	51.22	Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana OX=3702 GN=...	[more]
sp\|Q6J9Q2\|ERF86_ARATH	1.7e-24	78.46	Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q8H3Q1\|FZP_ORYSJ	4.9e-24	80.65	Ethylene-responsive transcription factor FZP OS=Oryza sativa subsp. japonica OX=...	[more]
sp\|Q9FZ90\|ERF87_ARATH	1.4e-23	80.33	Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q3E703\|ERF88_ARATH	4.6e-22	78.69	Ethylene-responsive transcription factor ERF088 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CsGy5G013880 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AU89\|A0A1S3AU89_CUCME	9.4e-81	83.56	ethylene-responsive transcription factor LEP OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
tr\|A0A2P6QZY6\|A0A2P6QZY6_ROSCH	2.6e-30	49.15	Putative transcription factor AP2-EREBP family OS=Rosa chinensis OX=74649 GN=Rch...	[more]
tr\|M5XK05\|M5XK05_PRUPE	5.8e-30	40.25	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G212700 PE=4 SV=1	[more]
tr\|A0A1U7ZQM3\|A0A1U7ZQM3_NELNU	5.8e-30	41.23	ethylene-responsive transcription factor LEP-like OS=Nelumbo nucifera OX=4432 GN...	[more]
tr\|A0A218X6G3\|A0A218X6G3_PUNGR	2.2e-29	42.11	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr019827 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR016177	DNA-bd_dom_sf
IPR036955	AP2/ERF_dom_sf
IPR001471	AP2/ERF_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G013880.1	CsGy5G013880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 47..63 score: 66.42 coord: 25..36 score: 53.33
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 24..87 e-value: 7.8E-34 score: 128.4
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 27..73 e-value: 3.6E-10 score: 39.8
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 24..81 score: 20.297
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 24..80 e-value: 1.23553E-29 score: 105.817
IPR036955	AP2/ERF domain superfamily	GENE3D	G3DSA:3.30.730.10		coord: 23..82 e-value: 1.5E-27 score: 97.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR31677	FAMILY NOT NAMED	coord: 18..104
None	No IPR available	PANTHER	PTHR31677:SF40	SUBFAMILY NOT NAMED	coord: 18..104
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	SSF54171	DNA-binding domain	coord: 25..82

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G013880	Cla009063	Watermelon (97103) v1	cgybwmB390
CsGy5G013880	CsaUNG003730	Cucumber (Chinese Long) v2	cgybcuB204
CsGy5G013880	MELO3C005088	Melon (DHL92) v3.5.1	cgybmeB295
CsGy5G013880	ClCG01G007910	Watermelon (Charleston Gray)	cgybwcgB341
CsGy5G013880	CSPIUnG00170	Wild cucumber (PI 183967)	cgybcpiB246
CsGy5G013880	CmaCh04G022290	Cucurbita maxima (Rimu)	cgybcmaB679
CsGy5G013880	CmoCh04G023280	Cucurbita moschata (Rifu)	cgybcmoB657
CsGy5G013880	Lsi09G008380	Bottle gourd (USVL1VR-Ls)	cgyblsiB303
CsGy5G013880	Cp4.1LG01g19260	Cucurbita pepo (Zucchini)	cgybcpeB653
CsGy5G013880	MELO3C005088.2	Melon (DHL92) v3.6.1	cgybmedB295
CsGy5G013880	CsaV3_5G021950	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G013880	Cla97C01G008260	Watermelon (97103) v2	cgybwmbB329
CsGy5G013880	Carg17759	Silver-seed gourd	carcgybB0487

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G013880	Cucurbita maxima (Rimu)	cgybcmaB663
CsGy5G013880	Cucurbita pepo (Zucchini)	cgybcpeB639
CsGy5G013880	Cucumber (Chinese Long) v2	cgybcuB223
CsGy5G013880	Bottle gourd (USVL1VR-Ls)	cgyblsiB298
CsGy5G013880	Watermelon (Charleston Gray)	cgybwcgB349
CsGy5G013880	Wild cucumber (PI 183967)	cgybcpiB225
CsGy5G013880	Watermelon (97103) v2	cgybwmbB354