CsaV3_5G010850 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G010850
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 6841746 .. 6842695 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAAACCACTTTACCCATCCTCCATATTCAGCCTCCTCATTATATCATCTCTCTCCCAGAAACAAAAACAAAAACACAAGCCCTTTTTTCTCCTTCTGATCCTTCTCATTCTTCATAGCCAAAAAACCTCCAAATGGGTCATTCTAAGATCATTAAGATGATTAGAATCAAAAACCTTCTTCTGCTTGCCCTTGTCATCTTCTTCGTTTTTGGTGTCGGAGTTTGCAGCTCTGCCTGTCGTTTGCCGTGCCACCGCGTGGCACTTGGCAGAGCTCAAGAACATGAAGAAATAGGAGATGGTTCATTGGATGATGATTCGAAGGACAATGATCCTTATAGAATGTATGGTGATGTTCCAAGCCCTGGTGTTGGCCATTGAAATAAAGCTTCCATTAATTTTCAGATCCATATATATATATAATATATATGAATATACAAAGTGTTGGGAGATTTGCAGACTTGGATTAATGTTTGTATTTTCTCTATCTCTCTTTTTTCTTCCTTCTTCATATTTTTTTTTCTAGGGGCTTTGGAAAGATTATAGTTGATGGTTTTTGTGTAAATTAATAAATGAATATAGTAGTTCTTTATATATTATTGCTACCTTACTTTTCTTTTTATATTAAATTACAAATTCAATTTCTATATTTGGGAGAAAGTTAAATTTTAGTAATTTATAAAATATTTGTAAATAATAATAATTTATGTCGTAGTATTATTTATGATAACTTTTATTAAACCATATGAACTCAATTCTACTTATAAATGGTATAATTTCTAATTTTTGTATAATTTTTTTATTAACTTTTCGTATGTCATGTACATAAAAAAATACTCTGTTTTTTCTCTCCTGTTTTACTCTAAATTTAAGGTTTGATTGTGTAATGAGTGATTGTTTATATAAGATAATTTTTTTTAGTGATCTTTGTCAAAATTTGGTGGGCTTATTA

mRNA sequence

ATGGGTCATTCTAAGATCATTAAGATGATTAGAATCAAAAACCTTCTTCTGCTTGCCCTTGTCATCTTCTTCGTTTTTGGTGTCGGAGTTTGCAGCTCTGCCTGTCGTTTGCCGTGCCACCGCGTGGCACTTGGCAGAGCTCAAGAACATGAAGAAATAGGAGATGGTTCATTGGATGATGATTCGAAGGACAATGATCCTTATAGAATGTATGGTGATGTTCCAAGCCCTGGTGTTGGCCATTGA

Coding sequence (CDS)

ATGGGTCATTCTAAGATCATTAAGATGATTAGAATCAAAAACCTTCTTCTGCTTGCCCTTGTCATCTTCTTCGTTTTTGGTGTCGGAGTTTGCAGCTCTGCCTGTCGTTTGCCGTGCCACCGCGTGGCACTTGGCAGAGCTCAAGAACATGAAGAAATAGGAGATGGTTCATTGGATGATGATTCGAAGGACAATGATCCTTATAGAATGTATGGTGATGTTCCAAGCCCTGGTGTTGGCCATTGA

Protein sequence

MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDDDSKDNDPYRMYGDVPSPGVGH
Homology
[Close]
BLAST of CsaV3_5G010850 vs. NCBI nr
Match: KGN50727.1 (hypothetical protein Csa_5G220900 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 2.4e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDD 60
          MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDD
Sbjct: 1  MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDD 60

Query: 61 DSKDNDPYRMYGDVPSPGVGH 82
          DSKDNDPYRMYGDVPSPGVGH
Sbjct: 61 DSKDNDPYRMYGDVPSPGVGH 81

[Close]
BLAST of CsaV3_5G010850 vs. TrEMBL
Match: tr|A0A0A0KQN4|A0A0A0KQN4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G220900 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.6e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDD 60
          MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDD
Sbjct: 1  MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDD 60

Query: 61 DSKDNDPYRMYGDVPSPGVGH 82
          DSKDNDPYRMYGDVPSPGVGH
Sbjct: 61 DSKDNDPYRMYGDVPSPGVGH 81

The following BLAST results are available for this feature:
BLAST of CsaV3_5G010850 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50727.12.4e-38100.00hypothetical protein Csa_5G220900 [Cucumis sativus][more]
BLAST of CsaV3_5G010850 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G010850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G010850 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KQN4|A0A0A0KQN4_CUCSA1.6e-38100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G220900 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G010850.1CsaV3_5G010850.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..81

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G010850CSPI05G11450Wild cucumber (PI 183967)cpicucB285
CsaV3_5G010850Cucsa.144030Cucumber (Gy14) v1cgycucB217
CsaV3_5G010850CmoCh04G011370Cucurbita moschata (Rifu)cmocucB0872
CsaV3_5G010850Cp4.1LG01g11630Cucurbita pepo (Zucchini)cpecucB0541
CsaV3_5G010850Cp4.1LG01g05700Cucurbita pepo (Zucchini)cpecucB0542
CsaV3_5G010850CsGy5G008710Cucumber (Gy14) v2cgybcucB232
CsaV3_5G010850Cla007284Watermelon (97103) v1cucwmB410
CsaV3_5G010850MELO3C020136Melon (DHL92) v3.5.1cucmeB382
CsaV3_5G010850ClCG07G004970Watermelon (Charleston Gray)cucwcgB422
CsaV3_5G010850Lsi04G010300Bottle gourd (USVL1VR-Ls)cuclsiB394
CsaV3_5G010850Cla97C07G133350Watermelon (97103) v2cucwmbB407
CsaV3_5G010850Bhi07G000426Wax gourdcucwgoB524
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G010850Watermelon (97103) v2cucwmbB381
CsaV3_5G010850Cucumber (Chinese Long) v3cuccucB203
CsaV3_5G010850Silver-seed gourdcarcucB0708
CsaV3_5G010850Silver-seed gourdcarcucB0948
CsaV3_5G010850Cucumber (Gy14) v2cgybcucB292
CsaV3_5G010850Cucurbita maxima (Rimu)cmacucB0350
CsaV3_5G010850Cucurbita maxima (Rimu)cmacucB0883
CsaV3_5G010850Cucurbita maxima (Rimu)cmacucB0884
CsaV3_5G010850Cucurbita moschata (Rifu)cmocucB0346
CsaV3_5G010850Cucurbita moschata (Rifu)cmocucB0873
CsaV3_5G010850Cucurbita pepo (Zucchini)cpecucB0233
CsaV3_5G010850Wild cucumber (PI 183967)cpicucB357
CsaV3_5G010850Bottle gourd (USVL1VR-Ls)cuclsiB359
CsaV3_5G010850Bottle gourd (USVL1VR-Ls)cuclsiB386
CsaV3_5G010850Melon (DHL92) v3.6.1cucmedB363
CsaV3_5G010850Watermelon (Charleston Gray)cucwcgB384
CsaV3_5G010850Watermelon (Charleston Gray)cucwcgB404
CsaV3_5G010850Watermelon (97103) v1cucwmB456