CsGy5G008710 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G008710
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr5 : 6711825 .. 6714235 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGGAGGTGCGACAAGGCTAAGAACTCATGAACTAACCTCTCTAAACATAAAATTTGGGTCACAAGAGGTGATTGAGGTCAAGAAAAGACCAGACGAGTTTACCAACCTTGGAAAGAAAAGTGAGTGACTCCTTGGCTATCTTAAGTTGAATTGTAGAATTATTAAACTAATGCTTGATGAACTTCTTTAAATTATGAAATTTTTTATCTAGCTTCAAAGGTTGAGCTTTCTGTGTTAAAATGCTTAGTTACTAGGTGTTGAGACCTCTCCGCCTAGGTAGAGGTGTTTCCGTGAGTTGAGCCTCCAAGGTAGTTATGCTATGTATGTATAGCTCAACACATGTGAGAGAGGTATTGAACTAAATGCCAAGGTGGTTGAAAGTTTAGATGTGTGCGTTAAGTTGATTACCATATGTGCTCGTGAGCAAAGTGCGGGAGGTATCCAACTAAACGCATGAGTGTAATATGTATGTTTAGGTCAACATGGGCTAGTGTGCTGCATACATTAGGTTTATCACTATGTGTCGAAACAAGTTGACATGAGTTATGTATGTAAAACTGATCACCGACCAAGTAAGTTGCATATATGAAGTTGATCCCTATCCGTGGTATTTAATTGTTAAAGTTGTTTGTTGAAAGATAAGTTATGAGAAGCGCCTTGAGTTAGAAAATGTTGCATTAACTCCATGCTTTATTTATTGCTTGTTAGCCAGTCAGCAAGAAGGGAAAAAACAGTGAAGGACGCGCATCGTTCAACTTCTTAAACAACTAGACAAAAAGTGTGAGTGCAAATCATTAGTTTAGACTCCCAGATAATTAAGCAACTGAGTACAAACTTGAGAGAGAATCATTTACGTCCATAAGAAAGGCTAAAACAATATACTCAATTTTAAAATATTCATTCAGATCATCTATGTCTCCACAAGTACATCGACCACAATTGTTAGTCGAATGATACAAAGCAAGTTTATTCCAAATCGTCTTCAATTTCGGAGAGTACGTGGAGATAGAGATTTAATCCTAAGCTAAATTGGATAACTAGTGTTGTAGTTGAAAAAATTGAGGTTGATTCTTGTGTTGATAACATTATTGCAAATTAACGGAAATATGTTATGCAGGATTAGAAAATTAAAACTAGCTAATATTTCCTTTAAAATTGAATTAAGGATATCCATGCAGTAACAATAGTGTTGTTACAAATGATCCAAGAACTAAGTAACTATACAGTAGGTTTCATCAATGTACCATTTACAAACCCTAACTTGTTCTTGATAGTGAGCCCTACAATCATAGCATTACTCCATGTGGAATAGTTGGACTCATTGAGGAAGTCCAAAACAAGAACAAAGTACGTTGCTGTTGTTCGAATATGGTGAAGAGAGTAGGGATTGAGATATTGATCAACAACTGATTGAGATAGAGGTTGAGCAGTAGATGAAGATGATGAGGAAAATGAAGAAGAAGACATCATTCTTGGTTGAGGAAGAGGATTGGATGTAGTCATATGGAAATTCAAACGAATTTAATGGGAGAGGCTTTGTAGGAGAGAACTCAAGTATAAAAGAGAGGGAATTACCTCTTATATACCATATATTAAAGACTTGAGTCTAAATAAAAGTTGCCTTAACCTCTCAGTAAAGAAAAATATAGCCACCTGTCACCATCAGGTTGTCACAATAATATAACAAATCATTAACAAATTTTAATAATAGGGTTATCTAACACTCAGGATGAAGACACTAATTTTCTTGTTATATGTATATTGTATGCTCCCTCATAGCATAGTAATTTAAAACCCCCCTCTACAATAGCATTATTAAATTTCAAATTTCTTAATTAATCAGGGAGAGGGCAAAAAGTTTAAACATTTCAAAATTGTCAAAACTTTCATATACATGGTATTAAATCCACTTTACAAAAGAACAAACATATTGATCATGGAATGGAATGAATGACCCACAAGGCCCCTAACCTTTTAAGATCCTAATAAATACACCCTCCTTCATCCTTCATCATGATGCTCCTCTATAAAACCACTTTACCCATCCTCCATATTCAGCCTCCTCATTATATCATCTCTCTCCCAGAAACAAAAACAAAAACACAAGCCCTTTTTTCTCCTTCTGATCCTTCTCATTCTTCATAGCCAAAAAACCTCCAAATGGGTCATTCTAAGATCATTAAGATGATTAGAATCAAAAACCTTCTTCTGCTTGCCCTTGTCATCTTCTTCGTTTTTGGTGTCGGAGTTTGCAGCTCTGCCTGTCGTTTGCCGTGCCACCGCGTGGCACTTGGCAGAGCTCAAGAACATGAAGAAATAGGAGATGGTTCATTGGATGATGATTCGAAGGACAATGATCCTTATAGAATGTATGGTGATGTTCCAAGCCCTGGTGTTGGCCATTGA

mRNA sequence

ATGCAAGGAGGTGCGACAAGGCTAAGAACTCATGAACTAACCTCTCTAAACATAAAATTTGGGTCACAAGAGCCAAAAAACCTCCAAATGGGTCATTCTAAGATCATTAAGATGATTAGAATCAAAAACCTTCTTCTGCTTGCCCTTGTCATCTTCTTCGTTTTTGGTGTCGGAGTTTGCAGCTCTGCCTGTCGTTTGCCGTGCCACCGCGTGGCACTTGGCAGAGCTCAAGAACATGAAGAAATAGGAGATGGTTCATTGGATGATGATTCGAAGGACAATGATCCTTATAGAATGTATGGTGATGTTCCAAGCCCTGGTGTTGGCCATTGA

Coding sequence (CDS)

ATGCAAGGAGGTGCGACAAGGCTAAGAACTCATGAACTAACCTCTCTAAACATAAAATTTGGGTCACAAGAGCCAAAAAACCTCCAAATGGGTCATTCTAAGATCATTAAGATGATTAGAATCAAAAACCTTCTTCTGCTTGCCCTTGTCATCTTCTTCGTTTTTGGTGTCGGAGTTTGCAGCTCTGCCTGTCGTTTGCCGTGCCACCGCGTGGCACTTGGCAGAGCTCAAGAACATGAAGAAATAGGAGATGGTTCATTGGATGATGATTCGAAGGACAATGATCCTTATAGAATGTATGGTGATGTTCCAAGCCCTGGTGTTGGCCATTGA

Protein sequence

MQGGATRLRTHELTSLNIKFGSQEPKNLQMGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDDDSKDNDPYRMYGDVPSPGVGH

Homology

[Close]

BLAST of CsGy5G008710 vs. NCBI nr
Match: KGN50727.1 (hypothetical protein Csa_5G220900 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 4.2e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 30  MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDD 89
           MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDD
Sbjct: 1   MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDD 60

Query: 90  DSKDNDPYRMYGDVPSPGVGH 111
           DSKDNDPYRMYGDVPSPGVGH
Sbjct: 61  DSKDNDPYRMYGDVPSPGVGH 81

[Close]

BLAST of CsGy5G008710 vs. TrEMBL
Match: tr|A0A0A0KQN4|A0A0A0KQN4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G220900 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.8e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 30  MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDD 89
           MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDD
Sbjct: 1   MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDD 60

Query: 90  DSKDNDPYRMYGDVPSPGVGH 111
           DSKDNDPYRMYGDVPSPGVGH
Sbjct: 61  DSKDNDPYRMYGDVPSPGVGH 81

The following BLAST results are available for this feature:

BLAST of CsGy5G008710 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50727.1	4.2e-38	100.00	hypothetical protein Csa_5G220900 [Cucumis sativus]	[more]

BLAST of CsGy5G008710 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G008710 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G008710 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KQN4\|A0A0A0KQN4_CUCSA	2.8e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G220900 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G008710.1	CsGy5G008710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..110

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G008710	Cla007284	Watermelon (97103) v1	cgybwmB359
CsGy5G008710	Csa5G220900	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G008710	MELO3C020136	Melon (DHL92) v3.5.1	cgybmeB320
CsGy5G008710	ClCG07G004970	Watermelon (Charleston Gray)	cgybwcgB369
CsGy5G008710	CSPI05G11450	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G008710	CmoCh04G011370	Cucurbita moschata (Rifu)	cgybcmoB651
CsGy5G008710	Lsi04G010300	Bottle gourd (USVL1VR-Ls)	cgyblsiB338
CsGy5G008710	Cp4.1LG01g05700	Cucurbita pepo (Zucchini)	cgybcpeB647
CsGy5G008710	Cp4.1LG01g11630	Cucurbita pepo (Zucchini)	cgybcpeB646
CsGy5G008710	CsaV3_5G010850	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G008710	Cla97C07G133350	Watermelon (97103) v2	cgybwmbB375
CsGy5G008710	Bhi07G000426	Wax gourd	cgybwgoB487

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G008710	Silver-seed gourd	carcgybB0670
CsGy5G008710	Silver-seed gourd	carcgybB0898
CsGy5G008710	Cucumber (Chinese Long) v3	cgybcucB242
CsGy5G008710	Watermelon (97103) v2	cgybwmbB347
CsGy5G008710	Wax gourd	cgybwgoB469
CsGy5G008710	Cucumber (Gy14) v2	cgybcgybB145
CsGy5G008710	Cucurbita maxima (Rimu)	cgybcmaB673
CsGy5G008710	Cucurbita maxima (Rimu)	cgybcmaB674
CsGy5G008710	Cucurbita moschata (Rifu)	cgybcmoB652
CsGy5G008710	Melon (DHL92) v3.6.1	cgybmedB311