Cp4.1LG01g05700 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g05700
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 532972 .. 533208 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCATCCCAACATCATCAGGATCAGAGCCCTTCTACTTCTTGCCCTCACCGTCTTCGTCTTCGCTGCTCGAGTTTGCAACGCTGCCTGCCGTCCACCGTGCTATGGCGTGGCTGTCACCACAGCTCAAGAACATGATGAAGACATGGAAGAGGGAGCTTTGGATGATGAAACAAAGGACAATGATCCTTACCGAATGTATGGTGATGTTCCAAGCCCCGGTGTTGGTCACTGA

mRNA sequence

ATGGCTCATCCCAACATCATCAGGATCAGAGCCCTTCTACTTCTTGCCCTCACCGTCTTCGTCTTCGCTGCTCGAGTTTGCAACGCTGCCTGCCGTCCACCGTGCTATGGCGTGGCTGTCACCACAGCTCAAGAACATGATGAAGACATGGAAGAGGGAGCTTTGGATGATGAAACAAAGGACAATGATCCTTACCGAATGTATGGTGATGTTCCAAGCCCCGGTGTTGGTCACTGA

Coding sequence (CDS)

ATGGCTCATCCCAACATCATCAGGATCAGAGCCCTTCTACTTCTTGCCCTCACCGTCTTCGTCTTCGCTGCTCGAGTTTGCAACGCTGCCTGCCGTCCACCGTGCTATGGCGTGGCTGTCACCACAGCTCAAGAACATGATGAAGACATGGAAGAGGGAGCTTTGGATGATGAAACAAAGGACAATGATCCTTACCGAATGTATGGTGATGTTCCAAGCCCCGGTGTTGGTCACTGA

Protein sequence

MAHPNIIRIRALLLLALTVFVFAARVCNAACRPPCYGVAVTTAQEHDEDMEEGALDDETKDNDPYRMYGDVPSPGVGH
Homology
[Close]
BLAST of Cp4.1LG01g05700 vs. TrEMBL
Match: A0A0A0KQN4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G220900 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-17
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 1 

Query: 1  MAHPNII---RIRALLLLALTVF-VFAARVCNAACRPPCYGVAVTTAQEHDEDMEEGALD 60
          M H  II   RI+ LLLLAL +F VF   VC++ACR PC+ VA+  AQEH+E + +G+LD
Sbjct: 1  MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEE-IGDGSLD 60

Query: 61 DETKDNDPYRMYGDVPSPGVGH 79
          D++KDNDPYRMYGDVPSPGVGH
Sbjct: 61 DDSKDNDPYRMYGDVPSPGVGH 81

[Close]
BLAST of Cp4.1LG01g05700 vs. NCBI nr
Match: gi|700195550|gb|KGN50727.1| (hypothetical protein Csa_5G220900 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-17
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 1 

Query: 1  MAHPNII---RIRALLLLALTVF-VFAARVCNAACRPPCYGVAVTTAQEHDEDMEEGALD 60
          M H  II   RI+ LLLLAL +F VF   VC++ACR PC+ VA+  AQEH+E + +G+LD
Sbjct: 1  MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEE-IGDGSLD 60

Query: 61 DETKDNDPYRMYGDVPSPGVGH 79
          D++KDNDPYRMYGDVPSPGVGH
Sbjct: 61 DDSKDNDPYRMYGDVPSPGVGH 81

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g05700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g05700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQN4_CUCSA1.8e-1763.41Uncharacterized protein OS=Cucumis sativus GN=Csa_5G220900 PE=4 SV=1[more]
BLAST of Cp4.1LG01g05700 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g05700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195550|gb|KGN50727.1|2.5e-1763.41hypothetical protein Csa_5G220900 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g05700.1Cp4.1LG01g05700.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g05700CmoCh04G011370Cucurbita moschata (Rifu)cmocpeB675
Cp4.1LG01g05700Cla007284Watermelon (97103) v1cpewmB418
Cp4.1LG01g05700MELO3C020136Melon (DHL92) v3.5.1cpemeB366
Cp4.1LG01g05700ClCG07G004970Watermelon (Charleston Gray)cpewcgB410
Cp4.1LG01g05700Lsi04G010300Bottle gourd (USVL1VR-Ls)cpelsiB355
Cp4.1LG01g05700CsaV3_5G010850Cucumber (Chinese Long) v3cpecucB0542
Cp4.1LG01g05700Bhi07G000426Wax gourdcpewgoB0554
Cp4.1LG01g05700CsGy5G008710Cucumber (Gy14) v2cgybcpeB647
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g05700Cp4.1LG01g11630Cucurbita pepo (Zucchini)cpecpeB374
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g05700Cucurbita pepo (Zucchini)cpecpeB401
Cp4.1LG01g05700Cucumber (Gy14) v1cgycpeB0388
Cp4.1LG01g05700Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g05700Cucurbita maxima (Rimu)cmacpeB723
Cp4.1LG01g05700Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g05700Wild cucumber (PI 183967)cpecpiB438
Cp4.1LG01g05700Cucumber (Chinese Long) v2cpecuB438
Cp4.1LG01g05700Melon (DHL92) v3.6.1cpemedB442
Cp4.1LG01g05700Silver-seed gourdcarcpeB0939
Cp4.1LG01g05700Silver-seed gourdcarcpeB1258
Cp4.1LG01g05700Silver-seed gourdcarcpeB1387