Cp4.1LG01g11630 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g11630
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 5889757 .. 5889990 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGTCTCAAGCTCATCAACATGATCAAAATCACACACCTTCTCCTTCCTGCCCTCATCGTCTTCTTTCTTTGCATCTCCGCTCGCCATCCACCGTGCCATGCCATGGCGCTCGCCCGAGCTCATAAACATGAAGAAATGGATGATGGGTCGTCGTTGGATGATGAATCAAAGGACAATGATCCTTATAGAATGTATGGTGATGTTCCAAGTCCTGGTGTTGGCCACTGA

mRNA sequence

ATGGGTCGTCTCAAGCTCATCAACATGATCAAAATCACACACCTTCTCCTTCCTGCCCTCATCGTCTTCTTTCTTTGCATCTCCGCTCGCCATCCACCGTGCCATGCCATGGCGCTCGCCCGAGCTCATAAACATGAAGAAATGGATGATGGGTCGTCGTTGGATGATGAATCAAAGGACAATGATCCTTATAGAATGTATGGTGATGTTCCAAGTCCTGGTGTTGGCCACTGA

Coding sequence (CDS)

ATGGGTCGTCTCAAGCTCATCAACATGATCAAAATCACACACCTTCTCCTTCCTGCCCTCATCGTCTTCTTTCTTTGCATCTCCGCTCGCCATCCACCGTGCCATGCCATGGCGCTCGCCCGAGCTCATAAACATGAAGAAATGGATGATGGGTCGTCGTTGGATGATGAATCAAAGGACAATGATCCTTATAGAATGTATGGTGATGTTCCAAGTCCTGGTGTTGGCCACTGA

Protein sequence

MGRLKLINMIKITHLLLPALIVFFLCISARHPPCHAMALARAHKHEEMDDGSSLDDESKDNDPYRMYGDVPSPGVGH
Homology
[Close]
BLAST of Cp4.1LG01g11630 vs. TrEMBL
Match: A0A0A0KQN4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G220900 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.5e-18
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1 

Query: 1  MGRLKLINMIKITHLLLPALIVFFL-----CISARHPPCHAMALARAHKHEEMDDGSSLD 60
          MG  K+I MI+I +LLL AL++FF+     C SA   PCH +AL RA +HEE+ DGS LD
Sbjct: 1  MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGS-LD 60

Query: 61 DESKDNDPYRMYGDVPSPGVGH 78
          D+SKDNDPYRMYGDVPSPGVGH
Sbjct: 61 DDSKDNDPYRMYGDVPSPGVGH 81

[Close]
BLAST of Cp4.1LG01g11630 vs. NCBI nr
Match: gi|700195550|gb|KGN50727.1| (hypothetical protein Csa_5G220900 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 5.1e-18
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1 

Query: 1  MGRLKLINMIKITHLLLPALIVFFL-----CISARHPPCHAMALARAHKHEEMDDGSSLD 60
          MG  K+I MI+I +LLL AL++FF+     C SA   PCH +AL RA +HEE+ DGS LD
Sbjct: 1  MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGS-LD 60

Query: 61 DESKDNDPYRMYGDVPSPGVGH 78
          D+SKDNDPYRMYGDVPSPGVGH
Sbjct: 61 DDSKDNDPYRMYGDVPSPGVGH 81

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g11630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g11630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQN4_CUCSA3.5e-1864.63Uncharacterized protein OS=Cucumis sativus GN=Csa_5G220900 PE=4 SV=1[more]
BLAST of Cp4.1LG01g11630 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g11630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195550|gb|KGN50727.1|5.1e-1864.63hypothetical protein Csa_5G220900 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g11630.1Cp4.1LG01g11630.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g11630CmoCh04G011370Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g11630MELO3C020136Melon (DHL92) v3.5.1cpemeB365
Cp4.1LG01g11630CsaV3_5G010850Cucumber (Chinese Long) v3cpecucB0541
Cp4.1LG01g11630Bhi07G000426Wax gourdcpewgoB0553
Cp4.1LG01g11630CsGy5G008710Cucumber (Gy14) v2cgybcpeB646
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g11630Cp4.1LG01g05700Cucurbita pepo (Zucchini)cpecpeB374
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g11630Cucumber (Gy14) v2cgybcpeB803
Cp4.1LG01g11630Melon (DHL92) v3.6.1cpemedB441
Cp4.1LG01g11630Silver-seed gourdcarcpeB0938
Cp4.1LG01g11630Silver-seed gourdcarcpeB1259
Cp4.1LG01g11630Cucumber (Chinese Long) v3cpecucB0574
Cp4.1LG01g11630Wax gourdcpewgoB0528
Cp4.1LG01g11630Cucurbita pepo (Zucchini)cpecpeB202
Cp4.1LG01g11630Cucurbita pepo (Zucchini)cpecpeB376
Cp4.1LG01g11630Cucumber (Gy14) v1cgycpeB0387
Cp4.1LG01g11630Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g11630Cucurbita maxima (Rimu)cmacpeB722
Cp4.1LG01g11630Cucurbita moschata (Rifu)cmocpeB674
Cp4.1LG01g11630Wild cucumber (PI 183967)cpecpiB437
Cp4.1LG01g11630Cucumber (Chinese Long) v2cpecuB437
Cp4.1LG01g11630Bottle gourd (USVL1VR-Ls)cpelsiB354
Cp4.1LG01g11630Watermelon (Charleston Gray)cpewcgB409
Cp4.1LG01g11630Watermelon (97103) v1cpewmB417