Lsi04G010300 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G010300
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr04 : 11790513 .. 11790740 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATGATCAGAATCAAAGACCTTCTTCTTCTTTTTCTCTTCGTCTTCTTTGTTCTCGGTGCCGGAGTTTGCAGCTCTGCCTGTCGTTTGCCGTGCCATCGTGTAGCGGTCGTCGGAGCTCAAAAACATGAAGAAATGGGAGATGGGTCATTGGATGATGATTCAAAGGATAATGATCCTTATAGAATGTATGGTGATGTTCCAAGCCCTGGTGTTGGCCACTGA

mRNA sequence

ATGAAGATGATCAGAATCAAAGACCTTCTTCTTCTTTTTCTCTTCGTCTTCTTTGTTCTCGGTGCCGGAGTTTGCAGCTCTGCCTGTCGTTTGCCGTGCCATCGTGTAGCGGTCGTCGGAGCTCAAAAACATGAAGAAATGGGAGATGGGTCATTGGATGATGATTCAAAGGATAATGATCCTTATAGAATGTATGGTGATGTTCCAAGCCCTGGTGTTGGCCACTGA

Coding sequence (CDS)

ATGAAGATGATCAGAATCAAAGACCTTCTTCTTCTTTTTCTCTTCGTCTTCTTTGTTCTCGGTGCCGGAGTTTGCAGCTCTGCCTGTCGTTTGCCGTGCCATCGTGTAGCGGTCGTCGGAGCTCAAAAACATGAAGAAATGGGAGATGGGTCATTGGATGATGATTCAAAGGATAATGATCCTTATAGAATGTATGGTGATGTTCCAAGCCCTGGTGTTGGCCACTGA

Protein sequence

MKMIRIKDLLLLFLFVFFVLGAGVCSSACRLPCHRVAVVGAQKHEEMGDGSLDDDSKDNDPYRMYGDVPSPGVGH
Homology
[Close]
BLAST of Lsi04G010300 vs. TrEMBL
Match: A0A0A0KQN4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G220900 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.7e-28
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 1 

Query: 1  MKMIRIKDLLLLFLFVFFVLGAGVCSSACRLPCHRVAVVGAQKHEEMGDGSLDDDSKDND 60
          +KMIRIK+LLLL L +FFV G GVCSSACRLPCHRVA+  AQ+HEE+GDGSLDDDSKDND
Sbjct: 7  IKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDDDSKDND 66

Query: 61 PYRMYGDVPSPGVGH 76
          PYRMYGDVPSPGVGH
Sbjct: 67 PYRMYGDVPSPGVGH 81

[Close]
BLAST of Lsi04G010300 vs. NCBI nr
Match: gi|700195550|gb|KGN50727.1| (hypothetical protein Csa_5G220900 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 5.3e-28
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 1 

Query: 1  MKMIRIKDLLLLFLFVFFVLGAGVCSSACRLPCHRVAVVGAQKHEEMGDGSLDDDSKDND 60
          +KMIRIK+LLLL L +FFV G GVCSSACRLPCHRVA+  AQ+HEE+GDGSLDDDSKDND
Sbjct: 7  IKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDDDSKDND 66

Query: 61 PYRMYGDVPSPGVGH 76
          PYRMYGDVPSPGVGH
Sbjct: 67 PYRMYGDVPSPGVGH 81

The following BLAST results are available for this feature:
BLAST of Lsi04G010300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G010300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQN4_CUCSA3.7e-2884.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G220900 PE=4 SV=1[more]
BLAST of Lsi04G010300 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi04G010300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195550|gb|KGN50727.1|5.3e-2884.00hypothetical protein Csa_5G220900 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G010300.1Lsi04G010300.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi04G010300Csa5G220900Cucumber (Chinese Long) v2culsiB369
Lsi04G010300CSPI05G11450Wild cucumber (PI 183967)cpilsiB373
Lsi04G010300CmoCh04G011370Cucurbita moschata (Rifu)cmolsiB662
Lsi04G010300Cla007284Watermelon (97103) v1lsiwmB306
Lsi04G010300MELO3C020136Melon (DHL92) v3.5.1lsimeB282
Lsi04G010300ClCG07G004970Watermelon (Charleston Gray)lsiwcgB297
Lsi04G010300Cla97C07G133350Watermelon (97103) v2lsiwmbB298
Lsi04G010300Bhi07G000426Wax gourdlsiwgoB381
Lsi04G010300Cp4.1LG01g05700Cucurbita pepo (Zucchini)cpelsiB355
Lsi04G010300CsGy5G008710Cucumber (Gy14) v2cgyblsiB338
Lsi04G010300CsaV3_5G010850Cucumber (Chinese Long) v3cuclsiB394
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G010300Watermelon (97103) v2lsiwmbB270
Lsi04G010300Wax gourdlsiwgoB362
Lsi04G010300Bottle gourd (USVL1VR-Ls)lsilsiB128
Lsi04G010300Cucumber (Gy14) v1cgylsiB232
Lsi04G010300Cucurbita maxima (Rimu)cmalsiB285
Lsi04G010300Cucurbita maxima (Rimu)cmalsiB671
Lsi04G010300Cucurbita maxima (Rimu)cmalsiB672
Lsi04G010300Cucurbita moschata (Rifu)cmolsiB274
Lsi04G010300Cucurbita moschata (Rifu)cmolsiB663
Lsi04G010300Cucurbita pepo (Zucchini)cpelsiB149
Lsi04G010300Cucurbita pepo (Zucchini)cpelsiB354
Lsi04G010300Wild cucumber (PI 183967)cpilsiB465
Lsi04G010300Cucumber (Chinese Long) v2culsiB458
Lsi04G010300Watermelon (Charleston Gray)lsiwcgB263
Lsi04G010300Cucumber (Gy14) v2cgyblsiB424
Lsi04G010300Melon (DHL92) v3.6.1lsimedB300
Lsi04G010300Silver-seed gourdcarlsiB242
Lsi04G010300Silver-seed gourdcarlsiB605
Lsi04G010300Silver-seed gourdcarlsiB828
Lsi04G010300Cucumber (Chinese Long) v3cuclsiB487