CsaV3_5G006010 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G006010
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptiontranscription factor TCP7-like
Locationchr5 : 3972251 .. 3973021 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAATTCTGATCATACTAATGGCGTCTCCAATGGCGCTACCATCGACACTCACAAGAATCACTCCTCTTCCAATGGAGCTCTCGTTGTTAAAAAGCCTCCTTCTAAGGATCGTCATAGTAAGGTTGATGGTCGTGGCCGTCGTATCCGTATGCCTATCATCTGTGCCGCTCGAGTTTTCCAGCTCACTCGTGAACTTGGTCATAAGTCCGACGGTCAAACCATCGAGTGGCTTCTTCGTCAAGCTGAGCCTTCTATTATTGCTGCTACTGGTACTGGTACTACTCCTGCTAATTTCTCCTCTGTTTCTCTTTCCGTTAGAGGAAATGGCGGCGGCTCTGCTTCTCTCTCTTCCCCTTCTTCCACTACTTCTACTCTTTCCCTCTCACGTCCTCAACCTCTTTCCGGTCCCACGCCGTTTATTCTCGGCAAGCGTGTTAGGTCCGACGATGATGCTAAAGACGATGCCTTAGGAGTGGGTCAAGCGGTTGGGTCCATAGTGGGTCCGACGGGGCCTGGTGGGTATTGGGCGATTCCGGCTAGACCCGATTATGGCCAGGTTTGGAGTTTTGCTGCCGCGGCTCCGTCGGAGATGGTGGTTCAACCAGGGGGGATTGCTCAACAAGCTTCGTTGTTTGCTCAACAGCAGCAGCCGATTAGAGAGGCGTCGGCGGCCAGAGTGGGGAATTACCTTCCTGGTCATCTGAATTTACTGGCGTCTTTGTCCGGTGGAGGTGGTTCTGGACGGCGGGAAGATGACCCTCGTTAA

mRNA sequence

ATGTCTAATTCTGATCATACTAATGGCGTCTCCAATGGCGCTACCATCGACACTCACAAGAATCACTCCTCTTCCAATGGAGCTCTCGTTGTTAAAAAGCCTCCTTCTAAGGATCGTCATAGTAAGGTTGATGGTCGTGGCCGTCGTATCCGTATGCCTATCATCTGTGCCGCTCGAGTTTTCCAGCTCACTCGTGAACTTGGTCATAAGTCCGACGGTCAAACCATCGAGTGGCTTCTTCGTCAAGCTGAGCCTTCTATTATTGCTGCTACTGGTACTGGTACTACTCCTGCTAATTTCTCCTCTGTTTCTCTTTCCGTTAGAGGAAATGGCGGCGGCTCTGCTTCTCTCTCTTCCCCTTCTTCCACTACTTCTACTCTTTCCCTCTCACGTCCTCAACCTCTTTCCGGTCCCACGCCGTTTATTCTCGGCAAGCGTGTTAGGTCCGACGATGATGCTAAAGACGATGCCTTAGGAGTGGGTCAAGCGGTTGGGTCCATAGTGGGTCCGACGGGGCCTGGTGGGTATTGGGCGATTCCGGCTAGACCCGATTATGGCCAGGTTTGGAGTTTTGCTGCCGCGGCTCCGTCGGAGATGGTGGTTCAACCAGGGGGGATTGCTCAACAAGCTTCGTTGTTTGCTCAACAGCAGCAGCCGATTAGAGAGGCGTCGGCGGCCAGAGTGGGGAATTACCTTCCTGGTCATCTGAATTTACTGGCGTCTTTGTCCGGTGGAGGTGGTTCTGGACGGCGGGAAGATGACCCTCGTTAA

Coding sequence (CDS)

ATGTCTAATTCTGATCATACTAATGGCGTCTCCAATGGCGCTACCATCGACACTCACAAGAATCACTCCTCTTCCAATGGAGCTCTCGTTGTTAAAAAGCCTCCTTCTAAGGATCGTCATAGTAAGGTTGATGGTCGTGGCCGTCGTATCCGTATGCCTATCATCTGTGCCGCTCGAGTTTTCCAGCTCACTCGTGAACTTGGTCATAAGTCCGACGGTCAAACCATCGAGTGGCTTCTTCGTCAAGCTGAGCCTTCTATTATTGCTGCTACTGGTACTGGTACTACTCCTGCTAATTTCTCCTCTGTTTCTCTTTCCGTTAGAGGAAATGGCGGCGGCTCTGCTTCTCTCTCTTCCCCTTCTTCCACTACTTCTACTCTTTCCCTCTCACGTCCTCAACCTCTTTCCGGTCCCACGCCGTTTATTCTCGGCAAGCGTGTTAGGTCCGACGATGATGCTAAAGACGATGCCTTAGGAGTGGGTCAAGCGGTTGGGTCCATAGTGGGTCCGACGGGGCCTGGTGGGTATTGGGCGATTCCGGCTAGACCCGATTATGGCCAGGTTTGGAGTTTTGCTGCCGCGGCTCCGTCGGAGATGGTGGTTCAACCAGGGGGGATTGCTCAACAAGCTTCGTTGTTTGCTCAACAGCAGCAGCCGATTAGAGAGGCGTCGGCGGCCAGAGTGGGGAATTACCTTCCTGGTCATCTGAATTTACTGGCGTCTTTGTCCGGTGGAGGTGGTTCTGGACGGCGGGAAGATGACCCTCGTTAA

Protein sequence

MSNSDHTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGGSASLSSPSSTTSTLSLSRPQPLSGPTPFILGKRVRSDDDAKDDALGVGQAVGSIVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQPGGIAQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGGSGRREDDPR
Homology
[Close]
BLAST of CsaV3_5G006010 vs. NCBI nr
Match: XP_004143620.1 (PREDICTED: transcription factor TCP7-like [Cucumis sativus] >KGN50442.1 hypothetical protein Csa_5G175170 [Cucumis sativus])

HSP 1 Score: 406.8 bits (1044), Expect = 5.6e-110
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0 

Query: 1   MSNSDHTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARV 60
           MSNSDHTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARV
Sbjct: 1   MSNSDHTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARV 60

Query: 61  FQLTRELGHKSDGQTIEWLLRQAEPSIIAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           FQLTRELGHKSDGQTIEWLLRQAEPSIIAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  FQLTRELGHKSDGQTIEWLLRQAEPSIIAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXLSGPTPFILGKRVRSDDDAKDDALGVGQAVGSIVGPTGPGGYWAIP 180
           XXXXXXXXXXXXXXLSGPTPFILGKRVRSDDDAKDDALGVGQAVGSIVGPTGPGGYWAIP
Sbjct: 121 XXXXXXXXXXXXXXLSGPTPFILGKRVRSDDDAKDDALGVGQAVGSIVGPTGPGGYWAIP 180

Query: 181 ARPDYGQVWSFAAAAPSEMVVQPGGIAQQASLFAQQQQPIREASAARVGNYLPGHLNLLA 240
           ARPDYGQVWSFAAAAPSEMVVQPGGIAQQASLFAQQQQPIREASAARVGNYLPGHLNLLA
Sbjct: 181 ARPDYGQVWSFAAAAPSEMVVQPGGIAQQASLFAQQQQPIREASAARVGNYLPGHLNLLA 240

Query: 241 SLSGGGGSGRREDDPR 257
           SLSGGGGSGRREDDPR
Sbjct: 241 SLSGGGGSGRREDDPR 256

[Close]
BLAST of CsaV3_5G006010 vs. NCBI nr
Match: XP_008445886.1 (PREDICTED: transcription factor TCP7-like [Cucumis melo])

HSP 1 Score: 390.6 bits (1002), Expect = 4.2e-105
Identity = 245/256 (95.70%), Postives = 247/256 (96.48%), Query Frame = 0 

Query: 1   MSNSDHTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARV 60
           MSNSDHTNGVSN A ID+HKN SSSNGAL VKKPPSKDRHSKVDGRGRRIRMPIICAARV
Sbjct: 1   MSNSDHTNGVSNAAAIDSHKNQSSSNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARV 60

Query: 61  FQLTRELGHKSDGQTIEWLLRQAEPSIIAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           FQLTRELGHKSDGQTIEWLLRQAEPSIIAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  FQLTRELGHKSDGQTIEWLLRQAEPSIIAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXLSGPTPFILGKRVRSDDDAKDDALGVGQAVGSIVGPTGPGGYWAIP 180
           XXXXXXXXXXX   LSGPTPFILGKRVRSDDDAKDD LGVGQAVGSIVGPTGPGGYWAIP
Sbjct: 121 XXXXXXXXXXXPQALSGPTPFILGKRVRSDDDAKDDGLGVGQAVGSIVGPTGPGGYWAIP 180

Query: 181 ARPDYGQVWSFAAAAPSEMVVQPGGIAQQASLFAQQQQPIREASAARVGNYLPGHLNLLA 240
           ARPDYGQVWSFAAAAPSEMVVQ GGI+QQASLFAQQQQPIREASAARVGNYLPGHLNLLA
Sbjct: 181 ARPDYGQVWSFAAAAPSEMVVQQGGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLA 240

Query: 241 SLSGGGGSGRREDDPR 257
           SLSGGGGSGRREDDPR
Sbjct: 241 SLSGGGGSGRREDDPR 256

[Close]
BLAST of CsaV3_5G006010 vs. NCBI nr
Match: XP_022999463.1 (transcription factor TCP7-like [Cucurbita maxima])

HSP 1 Score: 355.5 bits (911), Expect = 1.5e-94
Identity = 234/259 (90.35%), Postives = 236/259 (91.12%), Query Frame = 0 

Query: 1   MSNSD--HTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAA 60
           MSNSD  +TNGVSNGA IDTHKN  SSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAA
Sbjct: 1   MSNSDSGNTNGVSNGAAIDTHKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAA 60

Query: 61  RVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RVFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT  XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RVFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT-GXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXLSGPTPFILGKRVRSDDD-AKDDALGVGQAVGSIVGPTGPGGYW 180
           XXXXXXXXXXXX    LSGPTPFILGKRVRSDDD  KDD  G        VGPTGPGGYW
Sbjct: 121 XXXXXXXXXXXXRPQALSGPTPFILGKRVRSDDDGGKDDGTG--------VGPTGPGGYW 180

Query: 181 AIPARPDYGQVWSFAAAAPSEMVVQPGGIAQQASLFAQQQQPIREASAARVGNYLPGHLN 240
           AIPARPDYGQVWSFAAAAPSEMVVQPGGI+QQASLFAQQQQPIREASAARVGNYLPGHLN
Sbjct: 181 AIPARPDYGQVWSFAAAAPSEMVVQPGGISQQASLFAQQQQPIREASAARVGNYLPGHLN 240

Query: 241 LLASLSGGGGSGRREDDPR 257
           LLASLSGGGGSGRREDDPR
Sbjct: 241 LLASLSGGGGSGRREDDPR 250

[Close]
BLAST of CsaV3_5G006010 vs. NCBI nr
Match: XP_022957369.1 (transcription factor TCP7-like [Cucurbita moschata])

HSP 1 Score: 350.5 bits (898), Expect = 4.8e-93
Identity = 231/259 (89.19%), Postives = 234/259 (90.35%), Query Frame = 0 

Query: 1   MSNSD--HTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAA 60
           MSNSD  +TNGVSNGA +DTHKN  SSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAA
Sbjct: 81  MSNSDSGNTNGVSNGAAVDTHKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAA 140

Query: 61  RVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RVFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT  XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 141 RVFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT-GXXXXXXXXXXXXXXXXXXXXXXXXX 200

Query: 121 XXXXXXXXXXXXXXXXLSGPTPFILGKRVRSDDD-AKDDALGVGQAVGSIVGPTGPGGYW 180
           XXXXXXXXXXXX    LSGPTPFILGKRVRSDDD  KDD  G        VGPTGPGGYW
Sbjct: 201 XXXXXXXXXXXXRPQALSGPTPFILGKRVRSDDDGGKDDGAG--------VGPTGPGGYW 260

Query: 181 AIPARPDYGQVWSFAAAAPSEMVVQPGGIAQQASLFAQQQQPIREASAARVGNYLPGHLN 240
           AIPARPDYGQVWSFAAAAPSEMVVQPGGI+QQASLFAQ QQPIREASAARVGNYLP HLN
Sbjct: 261 AIPARPDYGQVWSFAAAAPSEMVVQPGGISQQASLFAQPQQPIREASAARVGNYLPSHLN 320

Query: 241 LLASLSGGGGSGRREDDPR 257
           LLASLSGGGGSGRREDDPR
Sbjct: 321 LLASLSGGGGSGRREDDPR 330

[Close]
BLAST of CsaV3_5G006010 vs. NCBI nr
Match: XP_023513991.1 (transcription factor TCP7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 347.1 bits (889), Expect = 5.3e-92
Identity = 231/259 (89.19%), Postives = 234/259 (90.35%), Query Frame = 0 

Query: 1   MSNSD--HTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAA 60
           MSNSD  +TNGVSNGA IDT KN  SSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAA
Sbjct: 1   MSNSDSGNTNGVSNGAAIDTPKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAA 60

Query: 61  RVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RVFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT  XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RVFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT-GXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXLSGPTPFILGKRVRSDDD-AKDDALGVGQAVGSIVGPTGPGGYW 180
           XXXXXXXXXXXX    LSGPTPFILGKRVRSDDD  KDD        GS VGPTGPGGYW
Sbjct: 121 XXXXXXXXXXXXRPQALSGPTPFILGKRVRSDDDGGKDD--------GSGVGPTGPGGYW 180

Query: 181 AIPARPDYGQVWSFAAAAPSEMVVQPGGIAQQASLFAQQQQPIREASAARVGNYLPGHLN 240
           A+PARPDYGQVWSFAAAAPSEMVVQPGGI+QQASLFAQ QQPIREASAARVGNYLP HLN
Sbjct: 181 AVPARPDYGQVWSFAAAAPSEMVVQPGGISQQASLFAQPQQPIREASAARVGNYLPSHLN 240

Query: 241 LLASLSGGGGSGRREDDPR 257
           LLASLSGGGGSGRREDDPR
Sbjct: 241 LLASLSGGGGSGRREDDPR 250

[Close]
BLAST of CsaV3_5G006010 vs. TAIR10
Match: AT5G23280.1 (TCP family transcription factor )

HSP 1 Score: 198.7 bits (504), Expect = 4.2e-51
Identity = 123/226 (54.42%), Postives = 134/226 (59.29%), Query Frame = 0 

Query: 37  KDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATXXXXX 96
           KDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT     
Sbjct: 40  KDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT----- 99

Query: 97  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSGPTPFILGKRVRSDDDAKD- 156
                                                 L G +PFILGKRVR+D+D+ + 
Sbjct: 100 ------GTGTTPASFSTASVSIRGATNSTSLDHKPTSLLGGTSPFILGKRVRADEDSNNS 159

Query: 157 -DALGVGQAVGSIVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQPGGIAQQASLFA 216
            +   VG+        T P G+WA+PARPD+GQVWSF A AP EM               
Sbjct: 160 HNHSSVGK---DETFTTTPAGFWAVPARPDFGQVWSF-AGAPQEMFXXXXXXXXXXXXXX 219

Query: 217 QQQQPIR---EASAARVGNYLPGHLNLLASLSGGG-GSGRREDDPR 257
                     EASAARVGNYLPGHLNLLASLSGG  GS RRE+DPR
Sbjct: 220 XXXXXXXXXGEASAARVGNYLPGHLNLLASLSGGSPGSDRREEDPR 250

[Close]
BLAST of CsaV3_5G006010 vs. TAIR10
Match: AT5G08330.1 (TCP family transcription factor )

HSP 1 Score: 197.2 bits (500), Expect = 1.2e-50
Identity = 132/267 (49.44%), Postives = 145/267 (54.31%), Query Frame = 0 

Query: 4   SDHTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQL 63
           +D+   VSNG  ++   N    N    VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQL
Sbjct: 2   ADNDGAVSNGIIVEQTSNKGPLN---AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQL 61

Query: 64  TRELGHKSDGQTIEWLLRQAEPSIIAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 123
           TRELGHKSDGQTIEWLLRQAEPSIIAAT                                
Sbjct: 62  TRELGHKSDGQTIEWLLRQAEPSIIAAT------------------------------GT 121

Query: 124 XXXXXXXXXXXLSGPTPFILGKR-VRSDDDAKDDALGVGQAVGSIVGPT-----GPGGYW 183
                      LS  +PF LGKR VR+++            VG  +G +         +W
Sbjct: 122 GTTPASFSTASLSTSSPFTLGKRVVRAEEXXXXXXXXXXXXVGHTMGTSLXXXXXXXXFW 181

Query: 184 AIPARPDYGQVWSFAAAAPSEMV--------VQPGGIAQQASLFAQQQQPIREASAARVG 243
           A+PARPD+GQVWSFA  AP EMV                             EASAARVG
Sbjct: 182 AVPARPDFGQVWSFATGAPPEMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEASAARVG 235

Query: 244 NYLPG-HLNLLASLSGG-GGSGRREDD 255
           NYLPG HLNLLASLSGG  GSGRREDD
Sbjct: 242 NYLPGHHLNLLASLSGGANGSGRREDD 235

[Close]
BLAST of CsaV3_5G006010 vs. TAIR10
Match: AT3G47620.1 (TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14)

HSP 1 Score: 112.1 bits (279), Expect = 5.2e-25
Identity = 53/71 (74.65%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 26  NGALVVKKPP-----SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLL 85
           +  +  KKPP     +KDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL
Sbjct: 102 SAVVAAKKPPLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLL 161

Query: 86  RQAEPSIIAAT 92
           +QAEPS+IAAT
Sbjct: 162 QQAEPSVIAAT 172

[Close]
BLAST of CsaV3_5G006010 vs. TAIR10
Match: AT1G72010.1 (TCP family transcription factor )

HSP 1 Score: 110.2 bits (274), Expect = 2.0e-24
Identity = 50/59 (84.75%), Postives = 57/59 (96.61%), Query Frame = 0 

Query: 33  KPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT 92
           K P+KDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAEP+IIA+T
Sbjct: 60  KKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAST 118

[Close]
BLAST of CsaV3_5G006010 vs. TAIR10
Match: AT3G27010.1 (TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20)

HSP 1 Score: 107.8 bits (268), Expect = 9.8e-24
Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = 0 

Query: 17  DTHKNHSSSN-GALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQT 76
           D   N  S N   L  K+  +KDRH+KV+GRGRRIRMP +CAAR+FQLTRELGHKSDG+T
Sbjct: 58  DKEPNKKSQNQNQLGPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGET 117

Query: 77  IEWLLRQAEPSIIAAT 92
           I+WLL+QAEPSIIAAT
Sbjct: 118 IQWLLQQAEPSIIAAT 133

[Close]
BLAST of CsaV3_5G006010 vs. Swiss-Prot
Match: sp|Q9FMX2|TCP7_ARATH (Transcription factor TCP7 OS=Arabidopsis thaliana OX=3702 GN=TCP7 PE=1 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 7.6e-50
Identity = 123/226 (54.42%), Postives = 134/226 (59.29%), Query Frame = 0 

Query: 37  KDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATXXXXX 96
           KDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT     
Sbjct: 40  KDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT----- 99

Query: 97  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSGPTPFILGKRVRSDDDAKD- 156
                                                 L G +PFILGKRVR+D+D+ + 
Sbjct: 100 ------GTGTTPASFSTASVSIRGATNSTSLDHKPTSLLGGTSPFILGKRVRADEDSNNS 159

Query: 157 -DALGVGQAVGSIVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQPGGIAQQASLFA 216
            +   VG+        T P G+WA+PARPD+GQVWSF A AP EM               
Sbjct: 160 HNHSSVGK---DETFTTTPAGFWAVPARPDFGQVWSF-AGAPQEMFXXXXXXXXXXXXXX 219

Query: 217 QQQQPIR---EASAARVGNYLPGHLNLLASLSGGG-GSGRREDDPR 257
                     EASAARVGNYLPGHLNLLASLSGG  GS RRE+DPR
Sbjct: 220 XXXXXXXXXGEASAARVGNYLPGHLNLLASLSGGSPGSDRREEDPR 250

[Close]
BLAST of CsaV3_5G006010 vs. Swiss-Prot
Match: sp|Q9FTA2|TCP21_ARATH (Transcription factor TCP21 OS=Arabidopsis thaliana OX=3702 GN=TCP21 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.2e-49
Identity = 132/267 (49.44%), Postives = 145/267 (54.31%), Query Frame = 0 

Query: 4   SDHTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQL 63
           +D+   VSNG  ++   N    N    VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQL
Sbjct: 2   ADNDGAVSNGIIVEQTSNKGPLN---AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQL 61

Query: 64  TRELGHKSDGQTIEWLLRQAEPSIIAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 123
           TRELGHKSDGQTIEWLLRQAEPSIIAAT                                
Sbjct: 62  TRELGHKSDGQTIEWLLRQAEPSIIAAT------------------------------GT 121

Query: 124 XXXXXXXXXXXLSGPTPFILGKR-VRSDDDAKDDALGVGQAVGSIVGPT-----GPGGYW 183
                      LS  +PF LGKR VR+++            VG  +G +         +W
Sbjct: 122 GTTPASFSTASLSTSSPFTLGKRVVRAEEXXXXXXXXXXXXVGHTMGTSLXXXXXXXXFW 181

Query: 184 AIPARPDYGQVWSFAAAAPSEMV--------VQPGGIAQQASLFAQQQQPIREASAARVG 243
           A+PARPD+GQVWSFA  AP EMV                             EASAARVG
Sbjct: 182 AVPARPDFGQVWSFATGAPPEMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEASAARVG 235

Query: 244 NYLPG-HLNLLASLSGG-GGSGRREDD 255
           NYLPG HLNLLASLSGG  GSGRREDD
Sbjct: 242 NYLPGHHLNLLASLSGGANGSGRREDD 235

[Close]
BLAST of CsaV3_5G006010 vs. Swiss-Prot
Match: sp|Q93Z00|TCP14_ARATH (Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.4e-24
Identity = 53/71 (74.65%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 26  NGALVVKKPP-----SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLL 85
           +  +  KKPP     +KDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL
Sbjct: 102 SAVVAAKKPPLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLL 161

Query: 86  RQAEPSIIAAT 92
           +QAEPS+IAAT
Sbjct: 162 QQAEPSVIAAT 172

[Close]
BLAST of CsaV3_5G006010 vs. Swiss-Prot
Match: sp|Q9C7G4|TCP22_ARATH (Transcription factor TCP22 OS=Arabidopsis thaliana OX=3702 GN=TCP22 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.6e-23
Identity = 50/59 (84.75%), Postives = 57/59 (96.61%), Query Frame = 0 

Query: 33  KPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT 92
           K P+KDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAEP+IIA+T
Sbjct: 60  KKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAST 118

[Close]
BLAST of CsaV3_5G006010 vs. Swiss-Prot
Match: sp|Q53PH2|PCF3_ORYSJ (Transcription factor PCF3 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF3 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-22
Identity = 48/59 (81.36%), Postives = 57/59 (96.61%), Query Frame = 0 

Query: 33  KPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT 92
           K P+KDRH+KV+GRGRRIRMP +CAARVFQLTRELGHK+DG+TIEWLL+QAEP+I+AAT
Sbjct: 149 KRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAAT 207

[Close]
BLAST of CsaV3_5G006010 vs. TrEMBL
Match: tr|A0A0A0KPX7|A0A0A0KPX7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175170 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 3.7e-110
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0 

Query: 1   MSNSDHTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARV 60
           MSNSDHTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARV
Sbjct: 1   MSNSDHTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARV 60

Query: 61  FQLTRELGHKSDGQTIEWLLRQAEPSIIAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           FQLTRELGHKSDGQTIEWLLRQAEPSIIAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  FQLTRELGHKSDGQTIEWLLRQAEPSIIAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXLSGPTPFILGKRVRSDDDAKDDALGVGQAVGSIVGPTGPGGYWAIP 180
           XXXXXXXXXXXXXXLSGPTPFILGKRVRSDDDAKDDALGVGQAVGSIVGPTGPGGYWAIP
Sbjct: 121 XXXXXXXXXXXXXXLSGPTPFILGKRVRSDDDAKDDALGVGQAVGSIVGPTGPGGYWAIP 180

Query: 181 ARPDYGQVWSFAAAAPSEMVVQPGGIAQQASLFAQQQQPIREASAARVGNYLPGHLNLLA 240
           ARPDYGQVWSFAAAAPSEMVVQPGGIAQQASLFAQQQQPIREASAARVGNYLPGHLNLLA
Sbjct: 181 ARPDYGQVWSFAAAAPSEMVVQPGGIAQQASLFAQQQQPIREASAARVGNYLPGHLNLLA 240

Query: 241 SLSGGGGSGRREDDPR 257
           SLSGGGGSGRREDDPR
Sbjct: 241 SLSGGGGSGRREDDPR 256

[Close]
BLAST of CsaV3_5G006010 vs. TrEMBL
Match: tr|A0A1S3BDR1|A0A1S3BDR1_CUCME (transcription factor TCP7-like OS=Cucumis melo OX=3656 GN=LOC103488772 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 2.8e-105
Identity = 245/256 (95.70%), Postives = 247/256 (96.48%), Query Frame = 0 

Query: 1   MSNSDHTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARV 60
           MSNSDHTNGVSN A ID+HKN SSSNGAL VKKPPSKDRHSKVDGRGRRIRMPIICAARV
Sbjct: 1   MSNSDHTNGVSNAAAIDSHKNQSSSNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARV 60

Query: 61  FQLTRELGHKSDGQTIEWLLRQAEPSIIAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           FQLTRELGHKSDGQTIEWLLRQAEPSIIAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  FQLTRELGHKSDGQTIEWLLRQAEPSIIAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXLSGPTPFILGKRVRSDDDAKDDALGVGQAVGSIVGPTGPGGYWAIP 180
           XXXXXXXXXXX   LSGPTPFILGKRVRSDDDAKDD LGVGQAVGSIVGPTGPGGYWAIP
Sbjct: 121 XXXXXXXXXXXPQALSGPTPFILGKRVRSDDDAKDDGLGVGQAVGSIVGPTGPGGYWAIP 180

Query: 181 ARPDYGQVWSFAAAAPSEMVVQPGGIAQQASLFAQQQQPIREASAARVGNYLPGHLNLLA 240
           ARPDYGQVWSFAAAAPSEMVVQ GGI+QQASLFAQQQQPIREASAARVGNYLPGHLNLLA
Sbjct: 181 ARPDYGQVWSFAAAAPSEMVVQQGGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLA 240

Query: 241 SLSGGGGSGRREDDPR 257
           SLSGGGGSGRREDDPR
Sbjct: 241 SLSGGGGSGRREDDPR 256

[Close]
BLAST of CsaV3_5G006010 vs. TrEMBL
Match: tr|A0A0L9U133|A0A0L9U133_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan02g263000 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.0e-67
Identity = 163/266 (61.28%), Postives = 178/266 (66.92%), Query Frame = 0 

Query: 1   MSNSD-HTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAAR 60
           MS SD  TNGVSN + ID  +       AL VKKPPSKDRHSKVDGRGRRIRMPIICAAR
Sbjct: 1   MSTSDGTTNGVSNASIIDPQRQQPQ---ALAVKKPPSKDRHSKVDGRGRRIRMPIICAAR 60

Query: 61  VFQLTRELGHKSDGQTIEWLLRQAEPSIIAATXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           VFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT                            
Sbjct: 61  VFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT-------GTGTTPASFSSVSLSVRAANS 120

Query: 121 XXXXXXXXXXXXXXXLSGPTPFILGKRVRSDDD-AKDDALGVGQAVGSIVGPTGPGGYWA 180
                          L  PTPFILGKR+R+DDD +KDDA+ VG    S+VGP+ P G WA
Sbjct: 121 ASLSSPSSASDHKPQLLAPTPFILGKRIRTDDDTSKDDAVSVGP---SLVGPSTPPGLWA 180

Query: 181 IPARPDYGQVWSFAAAAPSEMVVQPGGIA---QQASLFA----QQQQPIREASAARVGNY 240
           +PARPD+GQ+WSFAAA   EMVVQP  ++   Q ASLFA    QQQQ I EASAARVGNY
Sbjct: 181 LPARPDFGQIWSFAAA--PEMVVQPAAVSVSQQHASLFAHHQRQQQQAIGEASAARVGNY 240

Query: 241 LPGHLNLLASLSGG-GGSGRREDDPR 257
           LPGHLNLLASLSGG G SGRR+ + R
Sbjct: 241 LPGHLNLLASLSGGPGNSGRRDGEHR 251

[Close]
BLAST of CsaV3_5G006010 vs. TrEMBL
Match: tr|A0A0S3SLC0|A0A0S3SLC0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G016900 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.0e-67
Identity = 163/266 (61.28%), Postives = 178/266 (66.92%), Query Frame = 0 

Query: 1   MSNSD-HTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAAR 60
           MS SD  TNGVSN + ID  +       AL VKKPPSKDRHSKVDGRGRRIRMPIICAAR
Sbjct: 1   MSTSDGTTNGVSNASIIDPQRQQPQ---ALAVKKPPSKDRHSKVDGRGRRIRMPIICAAR 60

Query: 61  VFQLTRELGHKSDGQTIEWLLRQAEPSIIAATXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           VFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT                            
Sbjct: 61  VFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT-------GTGTTPASFSSVSLSVRAANS 120

Query: 121 XXXXXXXXXXXXXXXLSGPTPFILGKRVRSDDD-AKDDALGVGQAVGSIVGPTGPGGYWA 180
                          L  PTPFILGKR+R+DDD +KDDA+ VG    S+VGP+ P G WA
Sbjct: 121 ASLSSPSSASDHKPQLLAPTPFILGKRIRTDDDTSKDDAVSVGP---SLVGPSTPPGLWA 180

Query: 181 IPARPDYGQVWSFAAAAPSEMVVQPGGIA---QQASLFA----QQQQPIREASAARVGNY 240
           +PARPD+GQ+WSFAAA   EMVVQP  ++   Q ASLFA    QQQQ I EASAARVGNY
Sbjct: 181 LPARPDFGQIWSFAAA--PEMVVQPAAVSVSQQHASLFAHHQRQQQQAIGEASAARVGNY 240

Query: 241 LPGHLNLLASLSGG-GGSGRREDDPR 257
           LPGHLNLLASLSGG G SGRR+ + R
Sbjct: 241 LPGHLNLLASLSGGPGNSGRRDGEHR 251

[Close]
BLAST of CsaV3_5G006010 vs. TrEMBL
Match: tr|V7BCY6|V7BCY6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G015000g PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.0e-67
Identity = 161/266 (60.53%), Postives = 179/266 (67.29%), Query Frame = 0 

Query: 1   MSNSD-HTNGVSNGATIDTHKNHSSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAAR 60
           MS SD  TNGV+N + ID  ++       L VKKPPSKDRHSKVDGRGRRIRMPIICAAR
Sbjct: 1   MSTSDGTTNGVTNASIIDQQRHQPQ---PLAVKKPPSKDRHSKVDGRGRRIRMPIICAAR 60

Query: 61  VFQLTRELGHKSDGQTIEWLLRQAEPSIIAATXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           VFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT                            
Sbjct: 61  VFQLTRELGHKSDGQTIEWLLRQAEPSIIAAT-------GTGTTPASFSSVSLSVRAANS 120

Query: 121 XXXXXXXXXXXXXXXLSGPTPFILGKRVRSDDD-AKDDALGVGQAVGSIVGPTGPGGYWA 180
                          L  PTPFILGKR+R+DD+ +KDDA+ VG    S+VGP+ P G WA
Sbjct: 121 ASLSSPSSASDHKPQLLAPTPFILGKRIRTDDESSKDDAVSVGP---SLVGPSTPSGLWA 180

Query: 181 IPARPDYGQVWSFAAAAPSEMVVQPGGIA---QQASLFA----QQQQPIREASAARVGNY 240
           +P RPD+GQ+WSFAAAAP EMVV P  ++   QQ SLFA    QQQQ I EASAARVGNY
Sbjct: 181 LPTRPDFGQIWSFAAAAP-EMVVHPPAVSVSQQQVSLFAHHQRQQQQAIGEASAARVGNY 240

Query: 241 LPGHLNLLASLSGG-GGSGRREDDPR 257
           LPGHLNLLASLSGG G SGRR+D+ R
Sbjct: 241 LPGHLNLLASLSGGHGNSGRRDDEHR 252

The following BLAST results are available for this feature:
BLAST of CsaV3_5G006010 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143620.15.6e-110100.00PREDICTED: transcription factor TCP7-like [Cucumis sativus] >KGN50442.1 hypothet... [more]
XP_008445886.14.2e-10595.70PREDICTED: transcription factor TCP7-like [Cucumis melo][more]
XP_022999463.11.5e-9490.35transcription factor TCP7-like [Cucurbita maxima][more]
XP_022957369.14.8e-9389.19transcription factor TCP7-like [Cucurbita moschata][more]
XP_023513991.15.3e-9289.19transcription factor TCP7-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_5G006010 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G23280.14.2e-5154.42TCP family transcription factor [more]
AT5G08330.11.2e-5049.44TCP family transcription factor [more]
AT3G47620.15.2e-2574.65TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14[more]
AT1G72010.12.0e-2484.75TCP family transcription factor [more]
AT3G27010.19.8e-2469.74TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20[more]
BLAST of CsaV3_5G006010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FMX2|TCP7_ARATH7.6e-5054.42Transcription factor TCP7 OS=Arabidopsis thaliana OX=3702 GN=TCP7 PE=1 SV=1[more]
sp|Q9FTA2|TCP21_ARATH2.2e-4949.44Transcription factor TCP21 OS=Arabidopsis thaliana OX=3702 GN=TCP21 PE=1 SV=1[more]
sp|Q93Z00|TCP14_ARATH9.4e-2474.65Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1[more]
sp|Q9C7G4|TCP22_ARATH3.6e-2384.75Transcription factor TCP22 OS=Arabidopsis thaliana OX=3702 GN=TCP22 PE=2 SV=1[more]
sp|Q53PH2|PCF3_ORYSJ1.4e-2281.36Transcription factor PCF3 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF3 PE=2 ... [more]
BLAST of CsaV3_5G006010 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KPX7|A0A0A0KPX7_CUCSA3.7e-110100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175170 PE=4 SV=1[more]
tr|A0A1S3BDR1|A0A1S3BDR1_CUCME2.8e-10595.70transcription factor TCP7-like OS=Cucumis melo OX=3656 GN=LOC103488772 PE=4 SV=1[more]
tr|A0A0L9U133|A0A0L9U133_PHAAN3.0e-6761.28Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan02g263000 PE... [more]
tr|A0A0S3SLC0|A0A0S3SLC0_PHAAN3.0e-6761.28Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G... [more]
tr|V7BCY6|V7BCY6_PHAVU3.0e-6760.53Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G015000g PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR017887TF_TCP_subgr
IPR005333Transcription_factor_TCP
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G006010.1CsaV3_5G006010.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005333Transcription factor, TCPPFAMPF03634TCPcoord: 36..117
e-value: 9.5E-34
score: 117.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..140
NoneNo IPR availablePANTHERPTHR31072:SF7TRANSCRIPTION FACTOR TCP7coord: 5..256
NoneNo IPR availablePANTHERPTHR31072FAMILY NOT NAMEDcoord: 5..256
IPR017887Transcription factor TCP subgroupPROSITEPS51369TCPcoord: 36..90
score: 28.209