CsaV3_4G009600 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G009600
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 7303246 .. 7303865 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCTCCACCCTTCTCAATCTTCTCACCCTAGCCTTCCTGCTTATCTCCACCGCTGCCAACTCCCCGGCACCCTCTCCAGCACCCACCGCCGAATCACCAACGTGGAAATGGACACCTTCTAACGAACCACCCTCCTCTCCACCCACTGCGGAGCCGCCAATGACGACAACGTCTCCACCTTCGCCTACAATATCTCCCCCGCCCACCCCACCGGAGCTCAGCCCCGTTCCAACATCCTATGCACCCACTTCGCCGCCCATGGCTAACCCACCTACATTGTCGCCGACCGCTCCACCGCCGGCAGTGAAGAGTCCAAGTCATGCCCCGTCGCCGGCGAAAACAAAAGCACCGGCTCCAGCTCCGTCGAAAACTAGTCCGGCGCCAGCAAAGGCACCGAAATCTTCTAAAGCTCCGGTGAGTAGTCCTCCGTCACCGAATGGACAGATGGAGCCACCGACGCCATCCGTAGCTCCGGCACCGTCGAAAGAGGGTAACGGCGCCGGTGCAAACAGATTCGCCATTGGTGGGTCTATTGCAGGATTAATGATTGCGGCTTTTATCGCTTAAATGAAGCTATAATATATTTGTGGAATTCAGTTTGTTGGAGATTCTGA

mRNA sequence

ATGGCTTCCTCCACCCTTCTCAATCTTCTCACCCTAGCCTTCCTGCTTATCTCCACCGCTGCCAACTCCCCGGCACCCTCTCCAGCACCCACCGCCGAATCACCAACGTGGAAATGGACACCTTCTAACGAACCACCCTCCTCTCCACCCACTGCGGAGCCGCCAATGACGACAACGTCTCCACCTTCGCCTACAATATCTCCCCCGCCCACCCCACCGGAGCTCAGCCCCGTTCCAACATCCTATGCACCCACTTCGCCGCCCATGGCTAACCCACCTACATTGTCGCCGACCGCTCCACCGCCGGCAGTGAAGAGTCCAAGTCATGCCCCGTCGCCGGCGAAAACAAAAGCACCGGCTCCAGCTCCGTCGAAAACTAGTCCGGCGCCAGCAAAGGCACCGAAATCTTCTAAAGCTCCGGTGAGTAGTCCTCCGTCACCGAATGGACAGATGGAGCCACCGACGCCATCCGTAGCTCCGGCACCGTCGAAAGAGGGTAACGGCGCCGGTGCAAACAGATTCGCCATTGTTTGTTGGAGATTCTGA

Coding sequence (CDS)

ATGGCTTCCTCCACCCTTCTCAATCTTCTCACCCTAGCCTTCCTGCTTATCTCCACCGCTGCCAACTCCCCGGCACCCTCTCCAGCACCCACCGCCGAATCACCAACGTGGAAATGGACACCTTCTAACGAACCACCCTCCTCTCCACCCACTGCGGAGCCGCCAATGACGACAACGTCTCCACCTTCGCCTACAATATCTCCCCCGCCCACCCCACCGGAGCTCAGCCCCGTTCCAACATCCTATGCACCCACTTCGCCGCCCATGGCTAACCCACCTACATTGTCGCCGACCGCTCCACCGCCGGCAGTGAAGAGTCCAAGTCATGCCCCGTCGCCGGCGAAAACAAAAGCACCGGCTCCAGCTCCGTCGAAAACTAGTCCGGCGCCAGCAAAGGCACCGAAATCTTCTAAAGCTCCGGTGAGTAGTCCTCCGTCACCGAATGGACAGATGGAGCCACCGACGCCATCCGTAGCTCCGGCACCGTCGAAAGAGGGTAACGGCGCCGGTGCAAACAGATTCGCCATTGTTTGTTGGAGATTCTGA

Protein sequence

MASSTLLNLLTLAFLLISTAANSPAPSPAPTAESPTWKWTPSNEPPSSPPTAEPPMTTTSPPSPTISPPPTPPELSPVPTSYAPTSPPMANPPTLSPTAPPPAVKSPSHAPSPAKTKAPAPAPSKTSPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSVAPAPSKEGNGAGANRFAIVCWRF
Homology
[Close]
BLAST of CsaV3_4G009600 vs. NCBI nr
Match: XP_011654351.1 (PREDICTED: classical arabinogalactan protein 4-like [Cucumis sativus] >KGN53726.1 hypothetical protein Csa_4G111610 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 3.8e-04
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0 

Query: 1  MASSTLLNLLTLAFLLISTAANSXXXXXXXXXXXPTWKWTP 42
          MASSTLLNLLTLAFLLISTAANSXXXXXXXXXXXPTWKWTP
Sbjct: 1  MASSTLLNLLTLAFLLISTAANSXXXXXXXXXXXPTWKWTP 41

[Close]
BLAST of CsaV3_4G009600 vs. TrEMBL
Match: tr|A0A0A0L0Q7|A0A0A0L0Q7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111610 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.5e-04
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0 

Query: 1  MASSTLLNLLTLAFLLISTAANSXXXXXXXXXXXPTWKWTP 42
          MASSTLLNLLTLAFLLISTAANSXXXXXXXXXXXPTWKWTP
Sbjct: 1  MASSTLLNLLTLAFLLISTAANSXXXXXXXXXXXPTWKWTP 41

The following BLAST results are available for this feature:
BLAST of CsaV3_4G009600 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011654351.13.8e-04100.00PREDICTED: classical arabinogalactan protein 4-like [Cucumis sativus] >KGN53726.... [more]
BLAST of CsaV3_4G009600 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G009600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G009600 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L0Q7|A0A0A0L0Q7_CUCSA2.5e-04100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111610 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G009600.1CsaV3_4G009600.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 60..77
score: 44.44
coord: 17..38
score: 26.36
coord: 81..106
score: 36.92
coord: 39..55
score: 38.82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..170
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..160
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..128

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G009600CSPI04G09400Wild cucumber (PI 183967)cpicucB213
CsaV3_4G009600CmaCh16G002660Cucurbita maxima (Rimu)cmacucB0389
CsaV3_4G009600CmoCh16G002620Cucurbita moschata (Rifu)cmocucB0389
CsaV3_4G009600Cp4.1LG14g05170Cucurbita pepo (Zucchini)cpecucB0267
CsaV3_4G009600CsGy4G009200Cucumber (Gy14) v2cgybcucB171
CsaV3_4G009600Carg16783Silver-seed gourdcarcucB0911
CsaV3_4G009600MELO3C024829Melon (DHL92) v3.5.1cucmeB319
CsaV3_4G009600ClCG10G009410Watermelon (Charleston Gray)cucwcgB280
CsaV3_4G009600MELO3C024829.2Melon (DHL92) v3.6.1cucmedB312
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G009600Silver-seed gourdcarcucB0409
CsaV3_4G009600Cucumber (Gy14) v1cgycucB604
CsaV3_4G009600Cucurbita maxima (Rimu)cmacucB0856
CsaV3_4G009600Cucurbita moschata (Rifu)cmocucB0841
CsaV3_4G009600Cucurbita pepo (Zucchini)cpecucB0512
CsaV3_4G009600Bottle gourd (USVL1VR-Ls)cuclsiB297
CsaV3_4G009600Watermelon (97103) v1cucwmB304
CsaV3_4G009600Watermelon (97103) v2cucwmbB274
CsaV3_4G009600Wax gourdcucwgoB362