CmaCh16G002660 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G002660
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr16 : 1254159 .. 1254701 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTTCGCCGTTCTGAATGTTATCACGGCGGCGCTGCTTCTAATCTCCGCCTCGGCCAACTCTCCCCTACCATCTACAGCGCCAAGCCCAGAATCACAACCGTGGAAATGGACTCCCGATACAGAGTCGCCGTCATCTCCACCAGAGATGGAGCCGCCTTCGCCGTCAGTATCTCCACCGGAGCTCAGTCCCGTTCCGTCATCCGATACCCCAACTTCGCCGTCAGATGCTAACCCACCAACATTGTCGCCGGCCGCTCTACCGCCGGCGGTGAAGAGTCCCGTTCACGCGCCGTCGCCGTCGAAAACGAAAGCACCAGCTCCTGCTCCGTCGAAAATGAGTCCGACGCCGGCCAGGGCGCCGAAATCTTCTGCTGCTCCAGCGAGTAGTCCTCCGGCGCCAAATGGGGAGATGGAACCACCGACGCCATCCGTAGCTCCGACAGCGCCGAAGGCGGATAACGGCGGCGCTGCAAACAGATTCGCCATTAGTTGGTCAGTTGCATTTGGATTAATGGCGGCGGCTTTAATCGCTTAA

mRNA sequence

ATGGCTTCCTTCGCCGTTCTGAATGTTATCACGGCGGCGCTGCTTCTAATCTCCGCCTCGGCCAACTCTCCCCTACCATCTACAGCGCCAAGCCCAGAATCACAACCGTGGAAATGGACTCCCGATACAGAGTCGCCGTCATCTCCACCAGAGATGGAGCCGCCTTCGCCGTCAGTATCTCCACCGGAGCTCAGTCCCGTTCCGTCATCCGATACCCCAACTTCGCCGTCAGATGCTAACCCACCAACATTGTCGCCGGCCGCTCTACCGCCGGCGGTGAAGAGTCCCGTTCACGCGCCGTCGCCGTCGAAAACGAAAGCACCAGCTCCTGCTCCGTCGAAAATGAGTCCGACGCCGGCCAGGGCGCCGAAATCTTCTGCTGCTCCAGCGAGTAGTCCTCCGGCGCCAAATGGGGAGATGGAACCACCGACGCCATCCGTAGCTCCGACAGCGCCGAAGGCGGATAACGGCGGCGCTGCAAACAGATTCGCCATTAGTTGGTCAGTTGCATTTGGATTAATGGCGGCGGCTTTAATCGCTTAA

Coding sequence (CDS)

ATGGCTTCCTTCGCCGTTCTGAATGTTATCACGGCGGCGCTGCTTCTAATCTCCGCCTCGGCCAACTCTCCCCTACCATCTACAGCGCCAAGCCCAGAATCACAACCGTGGAAATGGACTCCCGATACAGAGTCGCCGTCATCTCCACCAGAGATGGAGCCGCCTTCGCCGTCAGTATCTCCACCGGAGCTCAGTCCCGTTCCGTCATCCGATACCCCAACTTCGCCGTCAGATGCTAACCCACCAACATTGTCGCCGGCCGCTCTACCGCCGGCGGTGAAGAGTCCCGTTCACGCGCCGTCGCCGTCGAAAACGAAAGCACCAGCTCCTGCTCCGTCGAAAATGAGTCCGACGCCGGCCAGGGCGCCGAAATCTTCTGCTGCTCCAGCGAGTAGTCCTCCGGCGCCAAATGGGGAGATGGAACCACCGACGCCATCCGTAGCTCCGACAGCGCCGAAGGCGGATAACGGCGGCGCTGCAAACAGATTCGCCATTAGTTGGTCAGTTGCATTTGGATTAATGGCGGCGGCTTTAATCGCTTAA

Protein sequence

MASFAVLNVITAALLLISASANSPLPSTAPSPESQPWKWTPDTESPSSPPEMEPPSPSVSPPELSPVPSSDTPTSPSDANPPTLSPAALPPAVKSPVHAPSPSKTKAPAPAPSKMSPTPARAPKSSAAPASSPPAPNGEMEPPTPSVAPTAPKADNGGAANRFAISWSVAFGLMAAALIA

Homology

[Close]

BLAST of CmaCh16G002660 vs. TrEMBL
Match: A0A0A0L0Q7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111610 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.5e-46
Identity = 128/191 (67.02%), Postives = 140/191 (73.30%), Query Frame = 1


Query: 1   MASFAVLNVITAALLLISASANSPLPSTAPSPESQPWKWTPDTESPSSPPEMEPP----- 60
           MAS  +LN++T A LLIS +ANSP PS AP+ ES  WKWTP  E PSSPP  EPP     
Sbjct: 1   MASSTLLNLLTLAFLLISTAANSPAPSPAPTAESPTWKWTPSNEPPSSPPTAEPPMTTTS 60

Query: 61  ------SPSVSPPELSPVPSSDTPTSPSDANPPTLSPAALPPAVKSPVHAPSPSKTKAPA 120
                 SP  +PPELSPVP+S  PTSP  ANPPTLSP A PPAVKSP HAPSP+KTKAPA
Sbjct: 61  PPSPTISPPPTPPELSPVPTSYAPTSPPMANPPTLSPTAPPPAVKSPSHAPSPAKTKAPA 120

Query: 121 PAPSKMSPTPARAPKSSAAPASSPPAPNGEMEPPTPSVAPTAPKADNGGAANRFAISWSV 180
           PAPSK SP PA+APKSS AP SSPP+PNG+MEPPTPSVAP   K  NG  ANRFAI  S+
Sbjct: 121 PAPSKTSPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSVAPAPSKEGNGAGANRFAIGGSI 180

[Close]

BLAST of CmaCh16G002660 vs. NCBI nr
Match: gi|659125839|ref|XP_008462882.1| (PREDICTED: classical arabinogalactan protein 4-like [Cucumis melo])

HSP 1 Score: 195.3 bits (495), Expect = 9.3e-47
Identity = 127/191 (66.49%), Postives = 140/191 (73.30%), Query Frame = 1


Query: 1   MASFAVLNVITAALLLISASANSPLPSTAPSPESQPWKWTPDTESPSSPPEMEPP----- 60
           MAS  +LN++T A LLISA+ANSP PS APS ES  WKWTP  + PSSPP  EPP     
Sbjct: 1   MASSTLLNLLTLAFLLISAAANSPAPSPAPSAESPTWKWTPTNQPPSSPPTAEPPMTTTS 60

Query: 61  ------SPSVSPPELSPVPSSDTPTSPSDANPPTLSPAALPPAVKSPVHAPSPSKTKAPA 120
                 SP  +PPELSPVPSS +PTSP  ANPPTLSP A PPAV SP HAPSP+KTKAPA
Sbjct: 61  PPSPTISPPATPPELSPVPSSYSPTSPPMANPPTLSPTAPPPAVTSPSHAPSPAKTKAPA 120

Query: 121 PAPSKMSPTPARAPKSSAAPASSPPAPNGEMEPPTPSVAPTAPKADNGGAANRFAISWSV 180
           PAPSK+SP PA+APKSS AP SSPP+PNG+MEPPTPS AP   K  NG  ANRFAI  S+
Sbjct: 121 PAPSKISPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSEAPAPSKEGNGAGANRFAIGGSI 180

[Close]

BLAST of CmaCh16G002660 vs. NCBI nr
Match: gi|778697569|ref|XP_011654351.1| (PREDICTED: classical arabinogalactan protein 4-like [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 3.5e-46
Identity = 128/191 (67.02%), Postives = 140/191 (73.30%), Query Frame = 1


Query: 1   MASFAVLNVITAALLLISASANSPLPSTAPSPESQPWKWTPDTESPSSPPEMEPP----- 60
           MAS  +LN++T A LLIS +ANSP PS AP+ ES  WKWTP  E PSSPP  EPP     
Sbjct: 1   MASSTLLNLLTLAFLLISTAANSPAPSPAPTAESPTWKWTPSNEPPSSPPTAEPPMTTTS 60

Query: 61  ------SPSVSPPELSPVPSSDTPTSPSDANPPTLSPAALPPAVKSPVHAPSPSKTKAPA 120
                 SP  +PPELSPVP+S  PTSP  ANPPTLSP A PPAVKSP HAPSP+KTKAPA
Sbjct: 61  PPSPTISPPPTPPELSPVPTSYAPTSPPMANPPTLSPTAPPPAVKSPSHAPSPAKTKAPA 120

Query: 121 PAPSKMSPTPARAPKSSAAPASSPPAPNGEMEPPTPSVAPTAPKADNGGAANRFAISWSV 180
           PAPSK SP PA+APKSS AP SSPP+PNG+MEPPTPSVAP   K  NG  ANRFAI  S+
Sbjct: 121 PAPSKTSPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSVAPAPSKEGNGAGANRFAIGGSI 180

The following BLAST results are available for this feature:

BLAST of CmaCh16G002660 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh16G002660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Q7_CUCSA	2.5e-46	67.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111610 PE=4 SV=1	[more]

BLAST of CmaCh16G002660 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh16G002660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125839\|ref\|XP_008462882.1\|	9.3e-47	66.49	PREDICTED: classical arabinogalactan protein 4-like [Cucumis melo]	[more]
gi\|778697569\|ref\|XP_011654351.1\|	3.5e-46	67.02	PREDICTED: classical arabinogalactan protein 4-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G002660.1	CmaCh16G002660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 55..71 score: 3.9E-13coord: 78..95 score: 3.9E-13coord: 30..51 score: 3.9E-13coord: 108..133 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G002660	CmoCh16G002620	Cucurbita moschata (Rifu)	cmacmoB325
CmaCh16G002660	Cp4.1LG14g05170	Cucurbita pepo (Zucchini)	cmacpeB346
CmaCh16G002660	CsaV3_4G009600	Cucumber (Chinese Long) v3	cmacucB0389
CmaCh16G002660	Carg16783	Silver-seed gourd	carcmaB1207

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G002660	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh16G002660	Cucumber (Gy14) v1	cgycmaB1101
CmaCh16G002660	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G002660	Cucurbita moschata (Rifu)	cmacmoB338
CmaCh16G002660	Wild cucumber (PI 183967)	cmacpiB339
CmaCh16G002660	Cucumber (Chinese Long) v2	cmacuB334
CmaCh16G002660	Melon (DHL92) v3.5.1	cmameB306
CmaCh16G002660	Watermelon (Charleston Gray)	cmawcgB280
CmaCh16G002660	Watermelon (97103) v1	cmawmB293
CmaCh16G002660	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G002660	Cucurbita pepo (Zucchini)	cmacpeB351
CmaCh16G002660	Bottle gourd (USVL1VR-Ls)	cmalsiB307
CmaCh16G002660	Cucumber (Gy14) v2	cgybcmaB495
CmaCh16G002660	Melon (DHL92) v3.6.1	cmamedB357
CmaCh16G002660	Silver-seed gourd	carcmaB0406
CmaCh16G002660	Silver-seed gourd	carcmaB0526
CmaCh16G002660	Silver-seed gourd	carcmaB0527
CmaCh16G002660	Watermelon (97103) v2	cmawmbB332
CmaCh16G002660	Watermelon (97103) v2	cmawmbB352
CmaCh16G002660	Wax gourd	cmawgoB0410