CmaCh16G002660.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G002660.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr16 : 1254159 .. 1254701 (+)
Sequence length	543

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTTCGCCGTTCTGAATGTTATCACGGCGGCGCTGCTTCTAATCTCCGCCTCGGCCAACTCTCCCCTACCATCTACAGCGCCAAGCCCAGAATCACAACCGTGGAAATGGACTCCCGATACAGAGTCGCCGTCATCTCCACCAGAGATGGAGCCGCCTTCGCCGTCAGTATCTCCACCGGAGCTCAGTCCCGTTCCGTCATCCGATACCCCAACTTCGCCGTCAGATGCTAACCCACCAACATTGTCGCCGGCCGCTCTACCGCCGGCGGTGAAGAGTCCCGTTCACGCGCCGTCGCCGTCGAAAACGAAAGCACCAGCTCCTGCTCCGTCGAAAATGAGTCCGACGCCGGCCAGGGCGCCGAAATCTTCTGCTGCTCCAGCGAGTAGTCCTCCGGCGCCAAATGGGGAGATGGAACCACCGACGCCATCCGTAGCTCCGACAGCGCCGAAGGCGGATAACGGCGGCGCTGCAAACAGATTCGCCATTAGTTGGTCAGTTGCATTTGGATTAATGGCGGCGGCTTTAATCGCTTAA

mRNA sequence

ATGGCTTCCTTCGCCGTTCTGAATGTTATCACGGCGGCGCTGCTTCTAATCTCCGCCTCGGCCAACTCTCCCCTACCATCTACAGCGCCAAGCCCAGAATCACAACCGTGGAAATGGACTCCCGATACAGAGTCGCCGTCATCTCCACCAGAGATGGAGCCGCCTTCGCCGTCAGTATCTCCACCGGAGCTCAGTCCCGTTCCGTCATCCGATACCCCAACTTCGCCGTCAGATGCTAACCCACCAACATTGTCGCCGGCCGCTCTACCGCCGGCGGTGAAGAGTCCCGTTCACGCGCCGTCGCCGTCGAAAACGAAAGCACCAGCTCCTGCTCCGTCGAAAATGAGTCCGACGCCGGCCAGGGCGCCGAAATCTTCTGCTGCTCCAGCGAGTAGTCCTCCGGCGCCAAATGGGGAGATGGAACCACCGACGCCATCCGTAGCTCCGACAGCGCCGAAGGCGGATAACGGCGGCGCTGCAAACAGATTCGCCATTAGTTGGTCAGTTGCATTTGGATTAATGGCGGCGGCTTTAATCGCTTAA

Coding sequence (CDS)

ATGGCTTCCTTCGCCGTTCTGAATGTTATCACGGCGGCGCTGCTTCTAATCTCCGCCTCGGCCAACTCTCCCCTACCATCTACAGCGCCAAGCCCAGAATCACAACCGTGGAAATGGACTCCCGATACAGAGTCGCCGTCATCTCCACCAGAGATGGAGCCGCCTTCGCCGTCAGTATCTCCACCGGAGCTCAGTCCCGTTCCGTCATCCGATACCCCAACTTCGCCGTCAGATGCTAACCCACCAACATTGTCGCCGGCCGCTCTACCGCCGGCGGTGAAGAGTCCCGTTCACGCGCCGTCGCCGTCGAAAACGAAAGCACCAGCTCCTGCTCCGTCGAAAATGAGTCCGACGCCGGCCAGGGCGCCGAAATCTTCTGCTGCTCCAGCGAGTAGTCCTCCGGCGCCAAATGGGGAGATGGAACCACCGACGCCATCCGTAGCTCCGACAGCGCCGAAGGCGGATAACGGCGGCGCTGCAAACAGATTCGCCATTAGTTGGTCAGTTGCATTTGGATTAATGGCGGCGGCTTTAATCGCTTAA

Protein sequence

MASFAVLNVITAALLLISASANSPLPSTAPSPESQPWKWTPDTESPSSPPEMEPPSPSVSPPELSPVPSSDTPTSPSDANPPTLSPAALPPAVKSPVHAPSPSKTKAPAPAPSKMSPTPARAPKSSAAPASSPPAPNGEMEPPTPSVAPTAPKADNGGAANRFAISWSVAFGLMAAALIA

Homology

[Close]

BLAST of CmaCh16G002660.1 vs. TrEMBL
Match: A0A0A0L0Q7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111610 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.5e-46
Identity = 128/191 (67.02%), Postives = 140/191 (73.30%), Query Frame = 1


Query: 1   MASFAVLNVITAALLLISASANSPLPSTAPSPESQPWKWTPDTESPSSPPEMEPP----- 60
           MAS  +LN++T A LLIS +ANSP PS AP+ ES  WKWTP  E PSSPP  EPP     
Sbjct: 1   MASSTLLNLLTLAFLLISTAANSPAPSPAPTAESPTWKWTPSNEPPSSPPTAEPPMTTTS 60

Query: 61  ------SPSVSPPELSPVPSSDTPTSPSDANPPTLSPAALPPAVKSPVHAPSPSKTKAPA 120
                 SP  +PPELSPVP+S  PTSP  ANPPTLSP A PPAVKSP HAPSP+KTKAPA
Sbjct: 61  PPSPTISPPPTPPELSPVPTSYAPTSPPMANPPTLSPTAPPPAVKSPSHAPSPAKTKAPA 120

Query: 121 PAPSKMSPTPARAPKSSAAPASSPPAPNGEMEPPTPSVAPTAPKADNGGAANRFAISWSV 180
           PAPSK SP PA+APKSS AP SSPP+PNG+MEPPTPSVAP   K  NG  ANRFAI  S+
Sbjct: 121 PAPSKTSPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSVAPAPSKEGNGAGANRFAIGGSI 180

[Close]

BLAST of CmaCh16G002660.1 vs. NCBI nr
Match: gi|659125839|ref|XP_008462882.1| (PREDICTED: classical arabinogalactan protein 4-like [Cucumis melo])

HSP 1 Score: 195.3 bits (495), Expect = 9.3e-47
Identity = 127/191 (66.49%), Postives = 140/191 (73.30%), Query Frame = 1


Query: 1   MASFAVLNVITAALLLISASANSPLPSTAPSPESQPWKWTPDTESPSSPPEMEPP----- 60
           MAS  +LN++T A LLISA+ANSP PS APS ES  WKWTP  + PSSPP  EPP     
Sbjct: 1   MASSTLLNLLTLAFLLISAAANSPAPSPAPSAESPTWKWTPTNQPPSSPPTAEPPMTTTS 60

Query: 61  ------SPSVSPPELSPVPSSDTPTSPSDANPPTLSPAALPPAVKSPVHAPSPSKTKAPA 120
                 SP  +PPELSPVPSS +PTSP  ANPPTLSP A PPAV SP HAPSP+KTKAPA
Sbjct: 61  PPSPTISPPATPPELSPVPSSYSPTSPPMANPPTLSPTAPPPAVTSPSHAPSPAKTKAPA 120

Query: 121 PAPSKMSPTPARAPKSSAAPASSPPAPNGEMEPPTPSVAPTAPKADNGGAANRFAISWSV 180
           PAPSK+SP PA+APKSS AP SSPP+PNG+MEPPTPS AP   K  NG  ANRFAI  S+
Sbjct: 121 PAPSKISPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSEAPAPSKEGNGAGANRFAIGGSI 180

[Close]

BLAST of CmaCh16G002660.1 vs. NCBI nr
Match: gi|778697569|ref|XP_011654351.1| (PREDICTED: classical arabinogalactan protein 4-like [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 3.5e-46
Identity = 128/191 (67.02%), Postives = 140/191 (73.30%), Query Frame = 1


Query: 1   MASFAVLNVITAALLLISASANSPLPSTAPSPESQPWKWTPDTESPSSPPEMEPP----- 60
           MAS  +LN++T A LLIS +ANSP PS AP+ ES  WKWTP  E PSSPP  EPP     
Sbjct: 1   MASSTLLNLLTLAFLLISTAANSPAPSPAPTAESPTWKWTPSNEPPSSPPTAEPPMTTTS 60

Query: 61  ------SPSVSPPELSPVPSSDTPTSPSDANPPTLSPAALPPAVKSPVHAPSPSKTKAPA 120
                 SP  +PPELSPVP+S  PTSP  ANPPTLSP A PPAVKSP HAPSP+KTKAPA
Sbjct: 61  PPSPTISPPPTPPELSPVPTSYAPTSPPMANPPTLSPTAPPPAVKSPSHAPSPAKTKAPA 120

Query: 121 PAPSKMSPTPARAPKSSAAPASSPPAPNGEMEPPTPSVAPTAPKADNGGAANRFAISWSV 180
           PAPSK SP PA+APKSS AP SSPP+PNG+MEPPTPSVAP   K  NG  ANRFAI  S+
Sbjct: 121 PAPSKTSPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSVAPAPSKEGNGAGANRFAIGGSI 180

The following BLAST results are available for this feature:

BLAST of CmaCh16G002660.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh16G002660.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Q7_CUCSA	2.5e-46	67.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111610 PE=4 SV=1	[more]

BLAST of CmaCh16G002660.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh16G002660.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125839\|ref\|XP_008462882.1\|	9.3e-47	66.49	PREDICTED: classical arabinogalactan protein 4-like [Cucumis melo]	[more]
gi\|778697569\|ref\|XP_011654351.1\|	3.5e-46	67.02	PREDICTED: classical arabinogalactan protein 4-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh16G002660	CmaCh16G002660	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh16G002660.1	CmaCh16G002660.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh16G002660.1.exon.1	CmaCh16G002660.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh16G002660.1.CDS.1	CmaCh16G002660.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 55..71 score: 3.9E-13coord: 78..95 score: 3.9E-13coord: 30..51 score: 3.9E-13coord: 108..133 score: 3.9