CmoCh16G002620 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G002620
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr16 : 1161615 .. 1162157 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCTTCGCCGTTCTGAATGTTATCACGGCGGCGCTGCTTCTAATCTCCGCCTCGGCCAACTCTCCCCTACCATCTCCAGCGCCAAGCCCAGAATCACCGCCGTGGAAATGGACTCCCGATACAGATTCGCCGTCATCTCCACCAGAGATGGAGCCGCCTTCGCCGTCAGTATCTCCACCGGAGCTCAGCCCCGTTCCGTCATCCGACACCCCGACTTCGCCGCCAGATGCTAACCCACCAACATTGTCGCCGGCCGCTCTACCGCCGGCGGTGAAGAGTCCCGTTCACGCGCCGTCGCCGTCGAAAACGAAAGCACCAGCTCCTGCTCCGTCCAAAATGAGTTCGACGCCGGCCAGGGCGCCGAAATCATCTGCTGCTCCAGTGAGTAGTCCTCCGGCGCCAAATGGGGAGATGGAACCACCGACGCCATCCGTAGCTCCGACAGCGCCGAAGGCGGAAAACGGCGGCGCTGCAAACAGATTCGCCATTGGTGGGACAGTTGCATTTGGATTAATGGCGGCGGCTTTAATCGCTTAA

mRNA sequence

ATGGCTTCCTTCGCCGTTCTGAATGTTATCACGGCGGCGCTGCTTCTAATCTCCGCCTCGGCCAACTCTCCCCTACCATCTCCAGCGCCAAGCCCAGAATCACCGCCGTGGAAATGGACTCCCGATACAGATTCGCCGTCATCTCCACCAGAGATGGAGCCGCCTTCGCCGTCAGTATCTCCACCGGAGCTCAGCCCCGTTCCGTCATCCGACACCCCGACTTCGCCGCCAGATGCTAACCCACCAACATTGTCGCCGGCCGCTCTACCGCCGGCGGTGAAGAGTCCCGTTCACGCGCCGTCGCCGTCGAAAACGAAAGCACCAGCTCCTGCTCCGTCCAAAATGAGTTCGACGCCGGCCAGGGCGCCGAAATCATCTGCTGCTCCAGTGAGTAGTCCTCCGGCGCCAAATGGGGAGATGGAACCACCGACGCCATCCGTAGCTCCGACAGCGCCGAAGGCGGAAAACGGCGGCGCTGCAAACAGATTCGCCATTGGTGGGACAGTTGCATTTGGATTAATGGCGGCGGCTTTAATCGCTTAA

Coding sequence (CDS)

ATGGCTTCCTTCGCCGTTCTGAATGTTATCACGGCGGCGCTGCTTCTAATCTCCGCCTCGGCCAACTCTCCCCTACCATCTCCAGCGCCAAGCCCAGAATCACCGCCGTGGAAATGGACTCCCGATACAGATTCGCCGTCATCTCCACCAGAGATGGAGCCGCCTTCGCCGTCAGTATCTCCACCGGAGCTCAGCCCCGTTCCGTCATCCGACACCCCGACTTCGCCGCCAGATGCTAACCCACCAACATTGTCGCCGGCCGCTCTACCGCCGGCGGTGAAGAGTCCCGTTCACGCGCCGTCGCCGTCGAAAACGAAAGCACCAGCTCCTGCTCCGTCCAAAATGAGTTCGACGCCGGCCAGGGCGCCGAAATCATCTGCTGCTCCAGTGAGTAGTCCTCCGGCGCCAAATGGGGAGATGGAACCACCGACGCCATCCGTAGCTCCGACAGCGCCGAAGGCGGAAAACGGCGGCGCTGCAAACAGATTCGCCATTGGTGGGACAGTTGCATTTGGATTAATGGCGGCGGCTTTAATCGCTTAA
Homology
[Close]
BLAST of CmoCh16G002620 vs. TrEMBL
Match: A0A0A0L0Q7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111610 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 6.9e-49
Identity = 131/191 (68.59%), Postives = 145/191 (75.92%), Query Frame = 1 

Query: 1   MASFAVLNVITAALLLISASANSPLPSPAPSPESPPWKWTPDTDSPSSPPEMEPP----- 60
           MAS  +LN++T A LLIS +ANSP PSPAP+ ESP WKWTP  + PSSPP  EPP     
Sbjct: 1   MASSTLLNLLTLAFLLISTAANSPAPSPAPTAESPTWKWTPSNEPPSSPPTAEPPMTTTS 60

Query: 61  ------SPSVSPPELSPVPSSDTPTSPPDANPPTLSPAALPPAVKSPVHAPSPSKTKAPA 120
                 SP  +PPELSPVP+S  PTSPP ANPPTLSP A PPAVKSP HAPSP+KTKAPA
Sbjct: 61  PPSPTISPPPTPPELSPVPTSYAPTSPPMANPPTLSPTAPPPAVKSPSHAPSPAKTKAPA 120

Query: 121 PAPSKMSSTPARAPKSSAAPVSSPPAPNGEMEPPTPSVAPTAPKAENGGAANRFAIGGTV 180
           PAPSK S  PA+APKSS APVSSPP+PNG+MEPPTPSVAP   K  NG  ANRFAIGG++
Sbjct: 121 PAPSKTSPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSVAPAPSKEGNGAGANRFAIGGSI 180

[Close]
BLAST of CmoCh16G002620 vs. NCBI nr
Match: gi|659125839|ref|XP_008462882.1| (PREDICTED: classical arabinogalactan protein 4-like [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 1.5e-49
Identity = 131/191 (68.59%), Postives = 144/191 (75.39%), Query Frame = 1 

Query: 1   MASFAVLNVITAALLLISASANSPLPSPAPSPESPPWKWTPDTDSPSSPPEMEPP----- 60
           MAS  +LN++T A LLISA+ANSP PSPAPS ESP WKWTP    PSSPP  EPP     
Sbjct: 1   MASSTLLNLLTLAFLLISAAANSPAPSPAPSAESPTWKWTPTNQPPSSPPTAEPPMTTTS 60

Query: 61  ------SPSVSPPELSPVPSSDTPTSPPDANPPTLSPAALPPAVKSPVHAPSPSKTKAPA 120
                 SP  +PPELSPVPSS +PTSPP ANPPTLSP A PPAV SP HAPSP+KTKAPA
Sbjct: 61  PPSPTISPPATPPELSPVPSSYSPTSPPMANPPTLSPTAPPPAVTSPSHAPSPAKTKAPA 120

Query: 121 PAPSKMSSTPARAPKSSAAPVSSPPAPNGEMEPPTPSVAPTAPKAENGGAANRFAIGGTV 180
           PAPSK+S  PA+APKSS APVSSPP+PNG+MEPPTPS AP   K  NG  ANRFAIGG++
Sbjct: 121 PAPSKISPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSEAPAPSKEGNGAGANRFAIGGSI 180

[Close]
BLAST of CmoCh16G002620 vs. NCBI nr
Match: gi|778697569|ref|XP_011654351.1| (PREDICTED: classical arabinogalactan protein 4-like [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 9.9e-49
Identity = 131/191 (68.59%), Postives = 145/191 (75.92%), Query Frame = 1 

Query: 1   MASFAVLNVITAALLLISASANSPLPSPAPSPESPPWKWTPDTDSPSSPPEMEPP----- 60
           MAS  +LN++T A LLIS +ANSP PSPAP+ ESP WKWTP  + PSSPP  EPP     
Sbjct: 1   MASSTLLNLLTLAFLLISTAANSPAPSPAPTAESPTWKWTPSNEPPSSPPTAEPPMTTTS 60

Query: 61  ------SPSVSPPELSPVPSSDTPTSPPDANPPTLSPAALPPAVKSPVHAPSPSKTKAPA 120
                 SP  +PPELSPVP+S  PTSPP ANPPTLSP A PPAVKSP HAPSP+KTKAPA
Sbjct: 61  PPSPTISPPPTPPELSPVPTSYAPTSPPMANPPTLSPTAPPPAVKSPSHAPSPAKTKAPA 120

Query: 121 PAPSKMSSTPARAPKSSAAPVSSPPAPNGEMEPPTPSVAPTAPKAENGGAANRFAIGGTV 180
           PAPSK S  PA+APKSS APVSSPP+PNG+MEPPTPSVAP   K  NG  ANRFAIGG++
Sbjct: 121 PAPSKTSPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSVAPAPSKEGNGAGANRFAIGGSI 180

The following BLAST results are available for this feature:
BLAST of CmoCh16G002620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0Q7_CUCSA6.9e-4968.59Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111610 PE=4 SV=1[more]
BLAST of CmoCh16G002620 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125839|ref|XP_008462882.1|1.5e-4968.59PREDICTED: classical arabinogalactan protein 4-like [Cucumis melo][more]
gi|778697569|ref|XP_011654351.1|9.9e-4968.59PREDICTED: classical arabinogalactan protein 4-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G002620.1CmoCh16G002620.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G002620CmaCh16G002660Cucurbita maxima (Rimu)cmacmoB325
CmoCh16G002620Cp4.1LG14g05170Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G002620CsaV3_4G009600Cucumber (Chinese Long) v3cmocucB0389
CmoCh16G002620Carg16783Silver-seed gourdcarcmoB1175
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G002620Melon (DHL92) v3.6.1cmomedB339
CmoCh16G002620Melon (DHL92) v3.6.1cmomedB343
CmoCh16G002620Silver-seed gourdcarcmoB0509
CmoCh16G002620Silver-seed gourdcarcmoB0510
CmoCh16G002620Silver-seed gourdcarcmoB0511
CmoCh16G002620Cucumber (Chinese Long) v3cmocucB0384
CmoCh16G002620Watermelon (97103) v2cmowmbB316
CmoCh16G002620Watermelon (97103) v2cmowmbB323
CmoCh16G002620Watermelon (97103) v2cmowmbB337
CmoCh16G002620Wax gourdcmowgoB0405
CmoCh16G002620Wax gourdcmowgoB0420
CmoCh16G002620Wax gourdcmowgoB0438
CmoCh16G002620Cucurbita moschata (Rifu)cmocmoB286
CmoCh16G002620Cucumber (Gy14) v1cgycmoB0189
CmoCh16G002620Cucumber (Gy14) v1cgycmoB1100
CmoCh16G002620Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G002620Cucurbita maxima (Rimu)cmacmoB701
CmoCh16G002620Wild cucumber (PI 183967)cmocpiB328
CmoCh16G002620Wild cucumber (PI 183967)cmocpiB333
CmoCh16G002620Cucumber (Chinese Long) v2cmocuB321
CmoCh16G002620Cucumber (Chinese Long) v2cmocuB326
CmoCh16G002620Melon (DHL92) v3.5.1cmomeB296
CmoCh16G002620Melon (DHL92) v3.5.1cmomeB299
CmoCh16G002620Watermelon (Charleston Gray)cmowcgB279
CmoCh16G002620Watermelon (Charleston Gray)cmowcgB295
CmoCh16G002620Watermelon (97103) v1cmowmB298
CmoCh16G002620Watermelon (97103) v1cmowmB307
CmoCh16G002620Cucurbita pepo (Zucchini)cmocpeB311
CmoCh16G002620Bottle gourd (USVL1VR-Ls)cmolsiB294
CmoCh16G002620Bottle gourd (USVL1VR-Ls)cmolsiB295
CmoCh16G002620Bottle gourd (USVL1VR-Ls)cmolsiB312
CmoCh16G002620Cucumber (Gy14) v2cgybcmoB464
CmoCh16G002620Cucumber (Gy14) v2cgybcmoB468