CSPI04G09400 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G09400
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 7342874 .. 7343446 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCTCCACCCTTCTCAATCTTCTCACCCTAGCCTTCCTGCTTATCTCCACCGCTGCCAACTCCCCGGCACCCTCTCCAGCACCCACCGCCGAATCACCAACGTGGAAATGGACACCTTCTAACGAACCACCCTCCTCTCCACCCACTGCGGAGCCGCCAATGACGACAACGTCTCCACCTTCGCCTACAATATCTCCCCCGGCCACCCCACCGGAGCTCAGCCCCGTTCCAACATCCTATGCACCCACTTCGCCGCCCATGGCTAACCCACCTACATTGTCGCCGACCGCTCCACCGCCGGCAGTGAAGAGTCCAAGTCATGCCCCGTCGCCGGCGAAAACAAAAGCACCGGCTCCAGCTCCGTCTAAAACTAGTCCGGCGCCAGCAAAGGCACCGAAATCTTCTAAAGCTCCGGTGAGTAGTCCTCCGTCACCGAATGGACAGATGGAGCCACCGACGCCATCCGTAGCTCCGGCACCGTCGAAAGAGGGTAACGGCGCCGGTGCAAACAGATTCGCCATTGGTGGGTCTATTGCAGGATTAATGATTGCGGCTTTTATCGCTTAA

mRNA sequence

ATGGCTTCCTCCACCCTTCTCAATCTTCTCACCCTAGCCTTCCTGCTTATCTCCACCGCTGCCAACTCCCCGGCACCCTCTCCAGCACCCACCGCCGAATCACCAACGTGGAAATGGACACCTTCTAACGAACCACCCTCCTCTCCACCCACTGCGGAGCCGCCAATGACGACAACGTCTCCACCTTCGCCTACAATATCTCCCCCGGCCACCCCACCGGAGCTCAGCCCCGTTCCAACATCCTATGCACCCACTTCGCCGCCCATGGCTAACCCACCTACATTGTCGCCGACCGCTCCACCGCCGGCAGTGAAGAGTCCAAGTCATGCCCCGTCGCCGGCGAAAACAAAAGCACCGGCTCCAGCTCCGTCTAAAACTAGTCCGGCGCCAGCAAAGGCACCGAAATCTTCTAAAGCTCCGGTGAGTAGTCCTCCGTCACCGAATGGACAGATGGAGCCACCGACGCCATCCGTAGCTCCGGCACCGTCGAAAGAGGGTAACGGCGCCGGTGCAAACAGATTCGCCATTGGTGGGTCTATTGCAGGATTAATGATTGCGGCTTTTATCGCTTAA

Coding sequence (CDS)

ATGGCTTCCTCCACCCTTCTCAATCTTCTCACCCTAGCCTTCCTGCTTATCTCCACCGCTGCCAACTCCCCGGCACCCTCTCCAGCACCCACCGCCGAATCACCAACGTGGAAATGGACACCTTCTAACGAACCACCCTCCTCTCCACCCACTGCGGAGCCGCCAATGACGACAACGTCTCCACCTTCGCCTACAATATCTCCCCCGGCCACCCCACCGGAGCTCAGCCCCGTTCCAACATCCTATGCACCCACTTCGCCGCCCATGGCTAACCCACCTACATTGTCGCCGACCGCTCCACCGCCGGCAGTGAAGAGTCCAAGTCATGCCCCGTCGCCGGCGAAAACAAAAGCACCGGCTCCAGCTCCGTCTAAAACTAGTCCGGCGCCAGCAAAGGCACCGAAATCTTCTAAAGCTCCGGTGAGTAGTCCTCCGTCACCGAATGGACAGATGGAGCCACCGACGCCATCCGTAGCTCCGGCACCGTCGAAAGAGGGTAACGGCGCCGGTGCAAACAGATTCGCCATTGGTGGGTCTATTGCAGGATTAATGATTGCGGCTTTTATCGCTTAA
Homology
[Close]
BLAST of CSPI04G09400 vs. TrEMBL
Match: A0A0A0L0Q7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111610 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.4e-84
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 1 

Query: 1   MASSTLLNLLTLAFLLISTAANSPAPSPAPTAESPTWKWTPSNEPPSSPPTAEPPMTTTS 60
           MASSTLLNLLTLAFLLISTAANSPAPSPAPTAESPTWKWTPSNEPPSSPPTAEPPMTTTS
Sbjct: 1   MASSTLLNLLTLAFLLISTAANSPAPSPAPTAESPTWKWTPSNEPPSSPPTAEPPMTTTS 60

Query: 61  PPSPTISPPATPPELSPVPTSYAPTSPPMANPPTLSPTAPPPAVKSPSHAPSPAKTKAPA 120
           PPSPTISPP TPPELSPVPTSYAPTSPPMANPPTLSPTAPPPAVKSPSHAPSPAKTKAPA
Sbjct: 61  PPSPTISPPPTPPELSPVPTSYAPTSPPMANPPTLSPTAPPPAVKSPSHAPSPAKTKAPA 120

Query: 121 PAPSKTSPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSVAPAPSKEGNGAGANRFAIGGSI 180
           PAPSKTSPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSVAPAPSKEGNGAGANRFAIGGSI
Sbjct: 121 PAPSKTSPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSVAPAPSKEGNGAGANRFAIGGSI 180

Query: 181 AGLMIAAFIA 191
           AGLMIAAFIA
Sbjct: 181 AGLMIAAFIA 190

[Close]
BLAST of CSPI04G09400 vs. NCBI nr
Match: gi|778697569|ref|XP_011654351.1| (PREDICTED: classical arabinogalactan protein 4-like [Cucumis sativus])

HSP 1 Score: 320.5 bits (820), Expect = 2.0e-84
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 1 

Query: 1   MASSTLLNLLTLAFLLISTAANSPAPSPAPTAESPTWKWTPSNEPPSSPPTAEPPMTTTS 60
           MASSTLLNLLTLAFLLISTAANSPAPSPAPTAESPTWKWTPSNEPPSSPPTAEPPMTTTS
Sbjct: 1   MASSTLLNLLTLAFLLISTAANSPAPSPAPTAESPTWKWTPSNEPPSSPPTAEPPMTTTS 60

Query: 61  PPSPTISPPATPPELSPVPTSYAPTSPPMANPPTLSPTAPPPAVKSPSHAPSPAKTKAPA 120
           PPSPTISPP TPPELSPVPTSYAPTSPPMANPPTLSPTAPPPAVKSPSHAPSPAKTKAPA
Sbjct: 61  PPSPTISPPPTPPELSPVPTSYAPTSPPMANPPTLSPTAPPPAVKSPSHAPSPAKTKAPA 120

Query: 121 PAPSKTSPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSVAPAPSKEGNGAGANRFAIGGSI 180
           PAPSKTSPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSVAPAPSKEGNGAGANRFAIGGSI
Sbjct: 121 PAPSKTSPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSVAPAPSKEGNGAGANRFAIGGSI 180

Query: 181 AGLMIAAFIA 191
           AGLMIAAFIA
Sbjct: 181 AGLMIAAFIA 190

[Close]
BLAST of CSPI04G09400 vs. NCBI nr
Match: gi|659125839|ref|XP_008462882.1| (PREDICTED: classical arabinogalactan protein 4-like [Cucumis melo])

HSP 1 Score: 300.8 bits (769), Expect = 1.7e-78
Identity = 180/191 (94.24%), Postives = 185/191 (96.86%), Query Frame = 1 

Query: 1   MASSTLLNLLTLAFLLISTAANSPAPSPAPTAESPTWKWTPSNEPPSSPPTAEPPMTTTS 60
           MASSTLLNLLTLAFLLIS AANSPAPSPAP+AESPTWKWTP+N+PPSSPPTAEPPMTTTS
Sbjct: 1   MASSTLLNLLTLAFLLISAAANSPAPSPAPSAESPTWKWTPTNQPPSSPPTAEPPMTTTS 60

Query: 61  PPSPTISPPATPPELSPVPTSYAPTSPPMANPPTLSPTAPPPAVKSPSHAPSPAKTKAPA 120
           PPSPTISPPATPPELSPVP+SY+PTSPPMANPPTLSPTAPPPAV SPSHAPSPAKTKAPA
Sbjct: 61  PPSPTISPPATPPELSPVPSSYSPTSPPMANPPTLSPTAPPPAVTSPSHAPSPAKTKAPA 120

Query: 121 PAPSKTSPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSVAPAPSKEGNGAGANRFAIGGSI 180
           PAPSK SPAPAKAPKSSKAPVSSPPSPNGQMEPPTPS APAPSKEGNGAGANRFAIGGSI
Sbjct: 121 PAPSKISPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSEAPAPSKEGNGAGANRFAIGGSI 180

Query: 181 -AGLMIAAFIA 191
            AG MIAAFIA
Sbjct: 181 AAGFMIAAFIA 191

The following BLAST results are available for this feature:
BLAST of CSPI04G09400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G09400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0Q7_CUCSA1.4e-8499.47Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111610 PE=4 SV=1[more]
BLAST of CSPI04G09400 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G09400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778697569|ref|XP_011654351.1|2.0e-8499.47PREDICTED: classical arabinogalactan protein 4-like [Cucumis sativus][more]
gi|659125839|ref|XP_008462882.1|1.7e-7894.24PREDICTED: classical arabinogalactan protein 4-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G09400.1CSPI04G09400.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 17..38
score: 1.0E-10coord: 39..55
score: 1.0E-10coord: 60..77
score: 1.0E-10coord: 81..106
score: 1.0