CsGy4G009200 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G009200
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr4 : 7426780 .. 7427352 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCCACCCTTCTCAATCTTCTCACCCTAGCCTTCCTGCTTATCTCCACCGCTGCCAACTCCCCGGCACCCTCTCCAGCACCCACCGCCGAATCACCAACGTGGAAATGGACACCTTCTAACGAACCACCCTCCTCTCCACCCACTGCGGAGCCGCCAATGACGACAACGTCTCCACCTTCGCCTACAATATCTCCCCCGCCCACCCCACCGGAGCTCAGCCCCGTTCCAACATCCTATGCACCCACTTCGCCGCCCATGGCTAACCCACCTACATTGTCGCCGACCGCTCCACCGCCGGCAGTGAAGAGTCCAAGTCATGCCCCGTCGCCGGCGAAAACAAAAGCACCCGCTCCAGCTCCGTCGAAAACTAGTCCGGCGCCAGCAAAGGCACCGAAATCTTCTAAAGCTCCGGTGAGTAGTCCTCCGTCACCGAATGGACAGATGGAGCCACCGACGCCATCCGTAGCTCCGGCACCGTCGAAAGAGGGTAACGGCGCCGGTGCAAACAGATTCGCCATTGGTGGGTCTATTGCAGGATTAATGATTGCGGCTTTTATCGCTTAA

mRNA sequence

ATGGCTTCCTCCACCCTTCTCAATCTTCTCACCCTAGCCTTCCTGCTTATCTCCACCGCTGCCAACTCCCCGGCACCCTCTCCAGCACCCACCGCCGAATCACCAACGTGGAAATGGACACCTTCTAACGAACCACCCTCCTCTCCACCCACTGCGGAGCCGCCAATGACGACAACGTCTCCACCTTCGCCTACAATATCTCCCCCGCCCACCCCACCGGAGCTCAGCCCCGTTCCAACATCCTATGCACCCACTTCGCCGCCCATGGCTAACCCACCTACATTGTCGCCGACCGCTCCACCGCCGGCAGTGAAGAGTCCAAGTCATGCCCCGTCGCCGGCGAAAACAAAAGCACCCGCTCCAGCTCCGTCGAAAACTAGTCCGGCGCCAGCAAAGGCACCGAAATCTTCTAAAGCTCCGGTGAGTAGTCCTCCGTCACCGAATGGACAGATGGAGCCACCGACGCCATCCGTAGCTCCGGCACCGTCGAAAGAGGGTAACGGCGCCGGTGCAAACAGATTCGCCATTGGTGGGTCTATTGCAGGATTAATGATTGCGGCTTTTATCGCTTAA

Coding sequence (CDS)

ATGGCTTCCTCCACCCTTCTCAATCTTCTCACCCTAGCCTTCCTGCTTATCTCCACCGCTGCCAACTCCCCGGCACCCTCTCCAGCACCCACCGCCGAATCACCAACGTGGAAATGGACACCTTCTAACGAACCACCCTCCTCTCCACCCACTGCGGAGCCGCCAATGACGACAACGTCTCCACCTTCGCCTACAATATCTCCCCCGCCCACCCCACCGGAGCTCAGCCCCGTTCCAACATCCTATGCACCCACTTCGCCGCCCATGGCTAACCCACCTACATTGTCGCCGACCGCTCCACCGCCGGCAGTGAAGAGTCCAAGTCATGCCCCGTCGCCGGCGAAAACAAAAGCACCCGCTCCAGCTCCGTCGAAAACTAGTCCGGCGCCAGCAAAGGCACCGAAATCTTCTAAAGCTCCGGTGAGTAGTCCTCCGTCACCGAATGGACAGATGGAGCCACCGACGCCATCCGTAGCTCCGGCACCGTCGAAAGAGGGTAACGGCGCCGGTGCAAACAGATTCGCCATTGGTGGGTCTATTGCAGGATTAATGATTGCGGCTTTTATCGCTTAA

Protein sequence

MASSTLLNLLTLAFLLISTAANSPAPSPAPTAESPTWKWTPSNEPPSSPPTAEPPMTTTSPPSPTISPPPTPPELSPVPTSYAPTSPPMANPPTLSPTAPPPAVKSPSHAPSPAKTKAPAPAPSKTSPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSVAPAPSKEGNGAGANRFAIGGSIAGLMIAAFIA

Homology

[Close]

BLAST of CsGy4G009200 vs. NCBI nr
Match: XP_011654351.1 (PREDICTED: classical arabinogalactan protein 4-like [Cucumis sativus] >KGN53726.1 hypothetical protein Csa_4G111610 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-08
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MASSTLLNLLTLAFLLISTAANSXXXXXXXXXXXPTWKWTPXXXXXXXXXXXXXXXXXXX 60
           MASSTLLNLLTLAFLLISTAANSXXXXXXXXXXXPTWKWTPXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MASSTLLNLLTLAFLLISTAANSXXXXXXXXXXXPTWKWTPXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPAPSKEGNGAGANRFAIGGSI 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPAPSKEGNGAGANRFAIGGSI
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPAPSKEGNGAGANRFAIGGSI 180

Query: 181 AGLMIAAFIA 191
           AGLMIAAFIA
Sbjct: 181 AGLMIAAFIA 190

[Close]

BLAST of CsGy4G009200 vs. TrEMBL
Match: tr|A0A0A0L0Q7|A0A0A0L0Q7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111610 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-08
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MASSTLLNLLTLAFLLISTAANSXXXXXXXXXXXPTWKWTPXXXXXXXXXXXXXXXXXXX 60
           MASSTLLNLLTLAFLLISTAANSXXXXXXXXXXXPTWKWTPXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MASSTLLNLLTLAFLLISTAANSXXXXXXXXXXXPTWKWTPXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPAPSKEGNGAGANRFAIGGSI 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPAPSKEGNGAGANRFAIGGSI
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPAPSKEGNGAGANRFAIGGSI 180

Query: 181 AGLMIAAFIA 191
           AGLMIAAFIA
Sbjct: 181 AGLMIAAFIA 190

The following BLAST results are available for this feature:

BLAST of CsGy4G009200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654351.1	2.1e-08	100.00	PREDICTED: classical arabinogalactan protein 4-like [Cucumis sativus] >KGN53726....	[more]

BLAST of CsGy4G009200 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G009200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G009200 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0Q7\|A0A0A0L0Q7_CUCSA	1.4e-08	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111610 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G009200.1	CsGy4G009200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 60..77 score: 44.44 coord: 17..38 score: 26.36 coord: 39..55 score: 38.82 coord: 81..106 score: 36.92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..41

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G009200	Csa4G111610	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G009200	CSPI04G09400	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G009200	MELO3C024829.2	Melon (DHL92) v3.6.1	cgybmedB271
CsGy4G009200	CsaV3_4G009600	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G009200	Carg16783	Silver-seed gourd	carcgybB0861

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G009200	Cucurbita maxima (Rimu)	cgybcmaB495
CsGy4G009200	Cucurbita moschata (Rifu)	cgybcmoB468
CsGy4G009200	Cucurbita moschata (Rifu)	cgybcmoB528
CsGy4G009200	Cucurbita pepo (Zucchini)	cgybcpeB488
CsGy4G009200	Cucurbita pepo (Zucchini)	cgybcpeB518
CsGy4G009200	Bottle gourd (USVL1VR-Ls)	cgyblsiB259
CsGy4G009200	Melon (DHL92) v3.5.1	cgybmeB273
CsGy4G009200	Watermelon (Charleston Gray)	cgybwcgB253
CsGy4G009200	Watermelon (97103) v1	cgybwmB272
CsGy4G009200	Silver-seed gourd	carcgybB0386
CsGy4G009200	Watermelon (97103) v2	cgybwmbB261
CsGy4G009200	Wax gourd	cgybwgoB344