CsaV3_3G014990 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G014990
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionNutrient reservoir
Locationchr3 : 11124690 .. 11125860 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATACTTCCATTTTTTCCTACTTTAACCCCAATTGTTTCTCTTTATTCATAAACAACCCCTTCCAATTAAAAACCAATCCCACTGTTTCTAAAAAACCACATACCTTCACTTCACTTCACTAATCTCCTTTGTAATTCCATTTCCCACCCTCTCTCTTCCCCCCACAATGGAAACTCCCATTCCTCTCCAATTTCTCATCTCTCTCACCGCGCTTCTCCTCCTTTTTCCCTCCGGAATTTCATCTCTTCCGGTCTTCCACCCCCGCTCCTCCGCCGGTGCTAAGTACCAAATTGAATGCACAATGTGCTCTGCTTGTGACAATCCTTGCGCTCAGTATCTATCTCCCCCACCTCCTCCACCGTCTCCTCCTCCCCCCGTCAACTGTCCGCCCCCGCCTTCTCCTCCCAGCTCCGGCACCTACGACTACTACTCTCCCCCCCCACCAGCTCAACCCTCTTACACATACTCCTCCCCGCCGCCGCCGGGTGGAATCATCGGACCCGGGGGGTACTACCAGCCCCCGCCGTATAGTAATTACCCAGCTCCCCCGCCTCCCAATCCCATTGTCCCATACTTCCCATTTTTTTACCATACTCCACCGCCGGGCTCTTCCGCCGCCGTCCCCCGTTTGACGAATTCCTTGCCTTGCTCTGTTCTTACCGTTGCCCTGTTTTCCTTTTTACTTGCTTTGTTTTAAATGCAAATAACAGCAGACAGAAACTTGCAATAATGGCGGATTTTGCAGATCTGGGAAATTGATGGAGCTAAATGAGAAAGAGAAATTGAGAAAAAAGAAAAAGGGTTTCGATCTTCGAAGAAGACGATGAGAAATTCACTTCAAGAATTTGCATTCTGTTGGGGTAAAGAAATTTTCTTTCTCATCCGGAAATTTCCTCTGAATCTCTTTCTTTTTACTTGACTCCATTGTTATTAGATTGATTTGTAATCTGCTGATTATATATAAATTGTATGTGTTTTTACTTGTATTCTTAACTCAATTCCTCAAAAAGCAAATCTGTATGTATCGAATATCTTCTTTATGTTTGTCATTTCAATTATATTTTTAAAGAACTGAATAACAGTGTTGGGACAGTGATTTTTTTATGTTCTTGATTTGTTCATCAATGGCGGATATGGGTCTAATCATTTTAGTTTGTAATTGTTGAAATT

mRNA sequence

ATGGAAACTCCCATTCCTCTCCAATTTCTCATCTCTCTCACCGCGCTTCTCCTCCTTTTTCCCTCCGGAATTTCATCTCTTCCGGTCTTCCACCCCCGCTCCTCCGCCGGTGCTAAGTACCAAATTGAATGCACAATGTGCTCTGCTTGTGACAATCCTTGCGCTCAGTATCTATCTCCCCCACCTCCTCCACCGTCTCCTCCTCCCCCCGTCAACTGTCCGCCCCCGCCTTCTCCTCCCAGCTCCGGCACCTACGACTACTACTCTCCCCCCCCACCAGCTCAACCCTCTTACACATACTCCTCCCCGCCGCCGCCGGGTGGAATCATCGGACCCGGGGGGTACTACCAGCCCCCGCCGTATAGTAATTACCCAGCTCCCCCGCCTCCCAATCCCATTGTCCCATACTTCCCATTTTTTTACCATACTCCACCGCCGGGCTCTTCCGCCGCCGTCCCCCGTTTGACGAATTCCTTGCCTTGCTCTGTTCTTACCGTTGCCCTGTTTTCCTTTTTACTTGCTTTGTTTTAA

Coding sequence (CDS)

ATGGAAACTCCCATTCCTCTCCAATTTCTCATCTCTCTCACCGCGCTTCTCCTCCTTTTTCCCTCCGGAATTTCATCTCTTCCGGTCTTCCACCCCCGCTCCTCCGCCGGTGCTAAGTACCAAATTGAATGCACAATGTGCTCTGCTTGTGACAATCCTTGCGCTCAGTATCTATCTCCCCCACCTCCTCCACCGTCTCCTCCTCCCCCCGTCAACTGTCCGCCCCCGCCTTCTCCTCCCAGCTCCGGCACCTACGACTACTACTCTCCCCCCCCACCAGCTCAACCCTCTTACACATACTCCTCCCCGCCGCCGCCGGGTGGAATCATCGGACCCGGGGGGTACTACCAGCCCCCGCCGTATAGTAATTACCCAGCTCCCCCGCCTCCCAATCCCATTGTCCCATACTTCCCATTTTTTTACCATACTCCACCGCCGGGCTCTTCCGCCGCCGTCCCCCGTTTGACGAATTCCTTGCCTTGCTCTGTTCTTACCGTTGCCCTGTTTTCCTTTTTACTTGCTTTGTTTTAA

Protein sequence

METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSPPPPPPSPPPPVNCPPPPSPPSSGTYDYYSPPPPAQPSYTYSSPPPPGGIIGPGGYYQPPPYSNYPAPPPPNPIVPYFPFFYHTPPPGSSAAVPRLTNSLPCSVLTVALFSFLLALF
Homology
[Close]
BLAST of CsaV3_3G014990 vs. NCBI nr
Match: KGN57146.1 (Nutrient reservoir [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 1.6e-26
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 1   METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSX 60
           METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSX
Sbjct: 1   METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRLTNSLPCSVLTVALFSFLLALF 177
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRLTNSLPCSVLTVALFSFLLALF
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRLTNSLPCSVLTVALFSFLLALF 176

[Close]
BLAST of CsaV3_3G014990 vs. NCBI nr
Match: XP_022955565.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita moschata])

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 44/59 (74.58%), Postives = 48/59 (81.36%), Query Frame = 0 

Query: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLS 60
          MET I L+F ISLTA+LL FP+G SSLP    R+ AGAKYQIECTMCSACDNPC QYLS
Sbjct: 1  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLS 59

[Close]
BLAST of CsaV3_3G014990 vs. NCBI nr
Match: XP_023526139.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.0 bits (214), Expect = 6.8e-14
Identity = 43/59 (72.88%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLS 60
          MET I L+  ISLTA+LL FP+G SSLP    R+ AGAKYQIECTMCSACDNPC QYLS
Sbjct: 1  METAISLKLFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLS 59

[Close]
BLAST of CsaV3_3G014990 vs. NCBI nr
Match: XP_022979944.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita maxima])

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-13
Identity = 43/59 (72.88%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLS 60
          MET I L+F ISLTA+LL F +G SSLP    R+ AGAKYQIECTMCSACDNPC QYLS
Sbjct: 1  METAISLKFFISLTAVLLSFTAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLS 59

[Close]
BLAST of CsaV3_3G014990 vs. NCBI nr
Match: XP_022137790.1 (leucine-rich repeat extensin-like protein 3 [Momordica charantia])

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-11
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGA---KYQIECTMCSACDNPCAQY 60
          ME   PL+FL+ L A+LL+FP+ + SLP    R+SAGA   KYQIECTMCSACDNPC QY
Sbjct: 1  MENGAPLRFLLPLAAVLLIFPATLWSLPATDRRTSAGAVSSKYQIECTMCSACDNPCGQY 60

[Close]
BLAST of CsaV3_3G014990 vs. TrEMBL
Match: tr|A0A0A0LAN7|A0A0A0LAN7_CUCSA (Nutrient reservoir OS=Cucumis sativus OX=3659 GN=Csa_3G165630 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.0e-26
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 1   METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSX 60
           METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSX
Sbjct: 1   METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRLTNSLPCSVLTVALFSFLLALF 177
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRLTNSLPCSVLTVALFSFLLALF
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRLTNSLPCSVLTVALFSFLLALF 176

The following BLAST results are available for this feature:
BLAST of CsaV3_3G014990 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57146.11.6e-26100.00Nutrient reservoir [Cucumis sativus][more]
XP_022955565.11.4e-1474.58leucine-rich repeat extensin-like protein 6 [Cucurbita moschata][more]
XP_023526139.16.8e-1472.88leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo][more]
XP_022979944.11.2e-1372.88leucine-rich repeat extensin-like protein 6 [Cucurbita maxima][more]
XP_022137790.12.4e-1164.52leucine-rich repeat extensin-like protein 3 [Momordica charantia][more]
BLAST of CsaV3_3G014990 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G014990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G014990 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LAN7|A0A0A0LAN7_CUCSA1.0e-26100.00Nutrient reservoir OS=Cucumis sativus OX=3659 GN=Csa_3G165630 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G014990.1CsaV3_3G014990.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 65..86
score: 34.55
coord: 53..65
score: 36.92
coord: 89..105
score: 44.71
coord: 115..132
score: 41.11
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..106

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G014990CSPI03G14790Wild cucumber (PI 183967)cpicucB144
CsaV3_3G014990Cucsa.252740Cucumber (Gy14) v1cgycucB387
CsaV3_3G014990CmoCh14G016340Cucurbita moschata (Rifu)cmocucB0283
CsaV3_3G014990Cp4.1LG03g11530Cucurbita pepo (Zucchini)cpecucB0759
CsaV3_3G014990CsGy3G014910Cucumber (Gy14) v2cgybcucB117
CsaV3_3G014990Cla021772Watermelon (97103) v1cucwmB239
CsaV3_3G014990MELO3C006695Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G014990Lsi05G015720Bottle gourd (USVL1VR-Ls)cuclsiB218
CsaV3_3G014990MELO3C006695.2Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G014990Cla97C05G087940Watermelon (97103) v2cucwmbB206
CsaV3_3G014990Bhi01G000757Wax gourdcucwgoB272
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G014990Cucumber (Chinese Long) v3cuccucB026
CsaV3_3G014990Cucumber (Chinese Long) v3cuccucB148
CsaV3_3G014990Silver-seed gourdcarcucB0079
CsaV3_3G014990Silver-seed gourdcarcucB0309
CsaV3_3G014990Silver-seed gourdcarcucB0741
CsaV3_3G014990Silver-seed gourdcarcucB0995
CsaV3_3G014990Cucumber (Gy14) v2cgybcucB030
CsaV3_3G014990Cucumber (Gy14) v2cgybcucB276
CsaV3_3G014990Cucumber (Gy14) v1cgycucB066
CsaV3_3G014990Cucurbita maxima (Rimu)cmacucB0001
CsaV3_3G014990Cucurbita maxima (Rimu)cmacucB0291
CsaV3_3G014990Cucurbita maxima (Rimu)cmacucB0425
CsaV3_3G014990Cucurbita maxima (Rimu)cmacucB0965
CsaV3_3G014990Cucurbita maxima (Rimu)cmacucB1049
CsaV3_3G014990Cucurbita moschata (Rifu)cmocucB0420
CsaV3_3G014990Cucurbita moschata (Rifu)cmocucB0953
CsaV3_3G014990Cucurbita moschata (Rifu)cmocucB1032
CsaV3_3G014990Cucurbita pepo (Zucchini)cpecucB0154
CsaV3_3G014990Cucurbita pepo (Zucchini)cpecucB0379
CsaV3_3G014990Cucurbita pepo (Zucchini)cpecucB1056
CsaV3_3G014990Wild cucumber (PI 183967)cpicucB033
CsaV3_3G014990Wild cucumber (PI 183967)cpicucB344
CsaV3_3G014990Bottle gourd (USVL1VR-Ls)cuclsiB163
CsaV3_3G014990Melon (DHL92) v3.5.1cucmeB176
CsaV3_3G014990Melon (DHL92) v3.5.1cucmeB198
CsaV3_3G014990Melon (DHL92) v3.6.1cucmedB167
CsaV3_3G014990Melon (DHL92) v3.6.1cucmedB189
CsaV3_3G014990Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G014990Watermelon (Charleston Gray)cucwcgB254
CsaV3_3G014990Watermelon (97103) v1cucwmB288
CsaV3_3G014990Watermelon (97103) v2cucwmbB233
CsaV3_3G014990Wax gourdcucwgoB257