CsGy3G014910 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G014910
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionNutrient reservoir
LocationChr3 : 10963241 .. 10964920 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACTCCCATTCCTCTCCAATTTCTCATCTCTCTCACCGCGCTTCTCCTCCTTTTTCCCTCCGGAATTTCATCTCTTCCGGTCTTCCACCCCCGCTCCTCCGCCGGTGCTAAGTACCAAATTGAATGCACAATGTGCTCTGCTTGTGACAATCCTTGCGCTCAGTATCTATCTCCCCCACCTCCTCCACCGTCTCCTCCTCCCCCGTCAACTGTCCGCCCCCGCCTTCTCCTCCCAGCTCCGGCACCTACGACTACTACTCTCCCCCCCACCAGCTCAACCCTCTTACACATACTCCTCCCCGCCGCCGCCGGGTGGAATCATCGGACCCGGGGGGTACTACCAGCCCCCGCCGTATAGTAATTACCCAGCTCCCCCGCCTCCCAATCCCATTGTCCCATACTTCCCATTTTTTTACCATACTCCACCGCCGGGCTCTTCCGCCGCCGTCCCCCGTTTGACGAATTCCTTGCCTTGCTCTGTTCTTACCGTTGCCCTGTTTTCCTTTTTACTTGCTTTGTTTTAAATGCAAATAACAGCAGACAGAAACTTGCAATAATGGCGGATTTTGCAGATCTGGGAAATTGATGGAGCTAAATGAGAAAGAGAAATTGAGAAAAAAGAAAAAGGGTTTCGATCTTCGAAGAAGACGATGAGAAATTCACTTCAAGAATTTGCATTCTGTTGGGGTAAAGAAATTTTCTTTCTCATCCGGAAATTTCCTCTGAATCTCTTTCTTTTTACTTGACTCCATTGTTATTAGATTGATTTGTAATCTGCTGATTATATATAAATTGTATGTGTTTTTACTTGTATTCTTAACTCAATTCCTCAAAAAGCAAATCTGTATGTATCGAATATCTTCTTTATGTTTGTCATTTCAATTATATTTTTAAAGAACTGAATAACAGTGTTGGGACAGTGATTTTTTTATGTTCTTGATTTGTTCATCAATGGCGGATATGGGTCTAATCATTTTAGTTTGTAATTGTTGAAATTAATAAAGAAAAAAAAAAAAGAAACTTCTCGAAACATTATTGTTCATAATATCCTGTTCTCTTAGACAAAATTGTAATTCACAATCTCTTTATCTCAGTTTTTATATTTGAACAAAGCCTTGAATCATGGGTCCAACTTGATTTTCTTTTAATAAAACTTCAAAGCTGTTTGACTGTTTGTAAAAGTGGTACTGTTCTTTGTTTAATATGAAGATTCCACTTAATTACATAATAACTTTTAACATTTATAATGTTAATGCAACAATTTGTTCATTTAAATAGTTTCTTCAAAATGTTAATGGTATAGGAAGGTAGCCAAATAATACTTTTAAATAGTTTGTTTAAGACATTTGTCACGTAAAATTAGGACTGATTTCTACTCTCTCTCTCTCTCTCTCTTTCCCTTCTACATATAAATAATCGTTTGTTATTTTTTAATGTGTTTTGAATTAAATAAACCAGCATATGTTCGATTGAACAGGATCATATTTTTAAATGAATTGAAAATTACTTATATTATTTGAGTTGTGAGATTTAATTAAGCCTACTTTATGCAAAATCAATTCTGCAAGTAATTGATTTCTTGAGTAATATGTGCTTCTCTAACTAACTTTTGGAAACTACATCTATGACACGTGTTCATAGGTTTAGGCGTAATATTGGATTGTACAAATACTAA

mRNA sequence

ATGGAAACTCCCATTCCTCTCCAATTTCTCATCTCTCTCACCGCGCTTCTCCTCCTTTTTCCCTCCGGAATTTCATCTCTTCCGGTCTTCCACCCCCGCTCCTCCGCCGGTGCTAAGTACCAAATTGAATGCACAATGTGCTCTGCTTGTGACAATCCTTGCGCTCAGTATCTATCTCCCCCACCTCCTCCACCGTCTCCTCCTCCCCCGTCAACTGTCCGCCCCCGCCTTCTCCTCCCAGCTCCGGCACCTACGACTACTACTCTCCCCCCCACCAGCTCAACCCTCTTACACATACTCCTCCCCGCCGCCGCCGGGTGGAATCATCGGACCCGGGGGGTACTACCAGCCCCCGCCGTATAATTGATTTGTAATCTGCTGATTATATATAAATTGTATGTGTTTTTACTTGTATTCTTAACTCAATTCCTCAAAAAGCAAATCTACAAAATTGAAGGTAGCCAAATAATACTTTTAAATAGTTTGTTTAAGACATTTGTCACGTTTAGGCGTAATATTGGATTGTACAAATACTAA

Coding sequence (CDS)

ATGGAAACTCCCATTCCTCTCCAATTTCTCATCTCTCTCACCGCGCTTCTCCTCCTTTTTCCCTCCGGAATTTCATCTCTTCCGGTCTTCCACCCCCGCTCCTCCGCCGGTGCTAAGTACCAAATTGAATGCACAATGTGCTCTGCTTGTGACAATCCTTGCGCTCAGTATCTATCTCCCCCACCTCCTCCACCGTCTCCTCCTCCCCCGTCAACTGTCCGCCCCCGCCTTCTCCTCCCAGCTCCGGCACCTACGACTACTACTCTCCCCCCCACCAGCTCAACCCTCTTACACATACTCCTCCCCGCCGCCGCCGGGTGGAATCATCGGACCCGGGGGGTACTACCAGCCCCCGCCGTATAA

Protein sequence

METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSPPPPPPSPPPPSTVRPRLLLPAPAPTTTTLPPTSSTLLHILLPAAAGWNHRTRGVLPAPAV
Homology
[Close]
BLAST of CsGy3G014910 vs. NCBI nr
Match: KGN57146.1 (Nutrient reservoir [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 2.2e-24
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLS 60
          METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLS
Sbjct: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLS 59

[Close]
BLAST of CsGy3G014910 vs. NCBI nr
Match: XP_022955565.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita moschata])

HSP 1 Score: 89.4 bits (220), Expect = 9.3e-15
Identity = 44/59 (74.58%), Postives = 48/59 (81.36%), Query Frame = 0 

Query: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLS 60
          MET I L+F ISLTA+LL FP+G SSLP    R+ AGAKYQIECTMCSACDNPC QYLS
Sbjct: 1  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLS 59

[Close]
BLAST of CsGy3G014910 vs. NCBI nr
Match: XP_023526139.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.0 bits (214), Expect = 4.6e-14
Identity = 43/59 (72.88%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLS 60
          MET I L+  ISLTA+LL FP+G SSLP    R+ AGAKYQIECTMCSACDNPC QYLS
Sbjct: 1  METAISLKLFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLS 59

[Close]
BLAST of CsGy3G014910 vs. NCBI nr
Match: XP_022979944.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita maxima])

HSP 1 Score: 86.3 bits (212), Expect = 7.9e-14
Identity = 43/59 (72.88%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLS 60
          MET I L+F ISLTA+LL F +G SSLP    R+ AGAKYQIECTMCSACDNPC QYLS
Sbjct: 1  METAISLKFFISLTAVLLSFTAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLS 59

[Close]
BLAST of CsGy3G014910 vs. NCBI nr
Match: XP_022137790.1 (leucine-rich repeat extensin-like protein 3 [Momordica charantia])

HSP 1 Score: 78.6 bits (192), Expect = 1.6e-11
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGA---KYQIECTMCSACDNPCAQY 60
          ME   PL+FL+ L A+LL+FP+ + SLP    R+SAGA   KYQIECTMCSACDNPC QY
Sbjct: 1  MENGAPLRFLLPLAAVLLIFPATLWSLPATDRRTSAGAVSSKYQIECTMCSACDNPCGQY 60

[Close]
BLAST of CsGy3G014910 vs. TrEMBL
Match: tr|A0A0A0LAN7|A0A0A0LAN7_CUCSA (Nutrient reservoir OS=Cucumis sativus OX=3659 GN=Csa_3G165630 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-24
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLS 60
          METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLS
Sbjct: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLS 59

The following BLAST results are available for this feature:
BLAST of CsGy3G014910 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57146.12.2e-24100.00Nutrient reservoir [Cucumis sativus][more]
XP_022955565.19.3e-1574.58leucine-rich repeat extensin-like protein 6 [Cucurbita moschata][more]
XP_023526139.14.6e-1472.88leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo][more]
XP_022979944.17.9e-1472.88leucine-rich repeat extensin-like protein 6 [Cucurbita maxima][more]
XP_022137790.11.6e-1164.52leucine-rich repeat extensin-like protein 3 [Momordica charantia][more]
BLAST of CsGy3G014910 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G014910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G014910 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LAN7|A0A0A0LAN7_CUCSA1.5e-24100.00Nutrient reservoir OS=Cucumis sativus OX=3659 GN=Csa_3G165630 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G014910.1CsGy3G014910.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..91

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G014910Cla021772Watermelon (97103) v1cgybwmB217
CsGy3G014910Csa3G165630Cucumber (Chinese Long) v2cgybcuB109
CsGy3G014910MELO3C006695Melon (DHL92) v3.5.1cgybmeB200
CsGy3G014910CSPI03G14790Wild cucumber (PI 183967)cgybcpiB110
CsGy3G014910CmoCh14G016340Cucurbita moschata (Rifu)cgybcmoB290
CsGy3G014910Lsi05G015720Bottle gourd (USVL1VR-Ls)cgyblsiB184
CsGy3G014910Cp4.1LG03g11530Cucurbita pepo (Zucchini)cgybcpeB406
CsGy3G014910MELO3C006695.2Melon (DHL92) v3.6.1cgybmedB201
CsGy3G014910CsaV3_3G014990Cucumber (Chinese Long) v3cgybcucB117
CsGy3G014910Cla97C05G087940Watermelon (97103) v2cgybwmbB196
CsGy3G014910Bhi01G000757Wax gourdcgybwgoB257
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G014910Cucumber (Chinese Long) v3cgybcucB107
CsGy3G014910Cucumber (Chinese Long) v3cgybcucB149
CsGy3G014910Watermelon (97103) v2cgybwmbB222
CsGy3G014910Wax gourdcgybwgoB240
CsGy3G014910Cucumber (Gy14) v2cgybcgybB021
CsGy3G014910Cucumber (Gy14) v2cgybcgybB109
CsGy3G014910Cucurbita maxima (Rimu)cgybcmaB274
CsGy3G014910Cucurbita maxima (Rimu)cgybcmaB318
CsGy3G014910Cucurbita maxima (Rimu)cgybcmaB345
CsGy3G014910Cucurbita maxima (Rimu)cgybcmaB427
CsGy3G014910Cucurbita maxima (Rimu)cgybcmaB454
CsGy3G014910Cucurbita moschata (Rifu)cgybcmoB317
CsGy3G014910Cucurbita moschata (Rifu)cgybcmoB401
CsGy3G014910Cucurbita moschata (Rifu)cgybcmoB421
CsGy3G014910Cucurbita pepo (Zucchini)cgybcpeB303
CsGy3G014910Cucurbita pepo (Zucchini)cgybcpeB348
CsGy3G014910Cucurbita pepo (Zucchini)cgybcpeB454
CsGy3G014910Cucumber (Chinese Long) v2cgybcuB146
CsGy3G014910Bottle gourd (USVL1VR-Ls)cgyblsiB136
CsGy3G014910Melon (DHL92) v3.5.1cgybmeB149
CsGy3G014910Melon (DHL92) v3.6.1cgybmedB148
CsGy3G014910Melon (DHL92) v3.6.1cgybmedB165
CsGy3G014910Watermelon (Charleston Gray)cgybwcgB203
CsGy3G014910Watermelon (Charleston Gray)cgybwcgB230
CsGy3G014910Watermelon (97103) v1cgybwmB262
CsGy3G014910Wild cucumber (PI 183967)cgybcpiB149
CsGy3G014910Silver-seed gourdcarcgybB0072
CsGy3G014910Silver-seed gourdcarcgybB0294
CsGy3G014910Silver-seed gourdcarcgybB0700
CsGy3G014910Silver-seed gourdcarcgybB0939